Wall clock time and date at job start Tue Mar 31 2020 12:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47425 * 2 1 4 4 N 1.46496 * 109.47272 * 119.99810 * 2 1 3 5 5 C 1.34781 * 120.00129 * 154.99910 * 4 2 1 6 6 O 1.21277 * 120.00027 * 0.02562 * 5 4 2 7 7 C 1.50703 * 119.99874 * 180.02562 * 5 4 2 8 8 H 1.08995 * 109.47130 * 59.99877 * 7 5 4 9 9 C 1.53004 * 109.46817 * 299.99706 * 7 5 4 10 10 N 1.46496 * 109.46940 * 180.02562 * 7 5 4 11 11 C 1.34775 * 120.00262 * 205.00032 * 10 7 5 12 12 O 1.21582 * 119.99649 * 359.97438 * 11 10 7 13 13 N 1.34773 * 120.00457 * 180.02562 * 11 10 7 14 14 C 1.39466 * 120.00094 * 175.14366 * 13 11 10 15 15 C 1.38644 * 119.64436 * 185.22045 * 14 13 11 16 16 C 1.40823 * 118.66839 * 179.97438 * 15 14 13 17 17 C 1.41544 * 120.99640 * 179.97438 * 16 15 14 18 18 H 1.07996 * 120.00361 * 149.48845 * 17 16 15 19 19 C 1.40032 * 119.99779 * 329.49308 * 17 16 15 20 20 N 1.30741 * 119.99843 * 167.68369 * 19 17 16 21 21 Si 1.86792 * 120.00171 * 347.68516 * 19 17 16 22 22 H 1.48498 * 109.47178 * 92.44219 * 21 19 17 23 23 H 1.48506 * 109.47081 * 212.43995 * 21 19 17 24 24 H 1.48498 * 109.47055 * 332.44103 * 21 19 17 25 25 C 1.41163 * 118.00736 * 0.02562 * 16 15 14 26 26 C 1.36590 * 119.12888 * 359.97438 * 25 16 15 27 27 N 1.32071 * 121.25616 * 359.74581 * 26 25 16 28 28 H 1.09002 * 109.47180 * 300.00059 * 1 2 3 29 29 H 1.09001 * 109.47251 * 60.00125 * 1 2 3 30 30 H 1.08996 * 109.47077 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47180 * 239.99941 * 2 1 3 32 32 H 1.08996 * 109.47255 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.46804 * 300.00149 * 3 2 1 34 34 H 1.09002 * 109.46990 * 59.99825 * 3 2 1 35 35 H 0.97007 * 120.00072 * 334.99922 * 4 2 1 36 36 H 1.08995 * 109.47410 * 300.00000 * 9 7 5 37 37 H 1.09006 * 109.46627 * 179.97438 * 9 7 5 38 38 H 1.09001 * 109.47218 * 60.00836 * 9 7 5 39 39 H 0.96998 * 120.00194 * 25.00148 * 10 7 5 40 40 H 0.96995 * 119.99802 * 355.14360 * 13 11 10 41 41 H 1.07996 * 120.66435 * 0.02562 * 15 14 13 42 42 H 0.96997 * 120.00230 * 179.97438 * 20 19 17 43 43 H 1.08003 * 120.43596 * 179.97438 * 25 16 15 44 44 H 1.07995 * 119.36977 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1961 5 6 3.2403 -1.2591 1.1944 6 8 3.9358 -1.1987 0.2027 7 6 3.7424 -1.9700 2.4247 8 1 3.0698 -2.7921 2.6692 9 6 3.7937 -0.9872 3.5962 10 7 5.0856 -2.4964 2.1704 11 6 5.5382 -3.5554 2.8707 12 8 4.8317 -4.0734 3.7138 13 7 6.7741 -4.0394 2.6372 14 6 7.2810 -5.0690 3.4297 15 6 8.5912 -5.4875 3.2547 16 6 9.0820 -6.5283 4.0664 17 6 10.4114 -6.9945 3.9294 18 1 10.9364 -7.3891 4.7867 19 6 11.0460 -6.9440 2.6821 20 7 12.3353 -7.1431 2.5961 21 14 10.0504 -6.5921 1.1413 22 1 10.0591 -5.1323 0.8689 23 1 10.6488 -7.3140 -0.0103 24 1 8.6519 -7.0502 1.3401 25 6 8.2081 -7.0936 5.0201 26 6 6.9328 -6.6147 5.1194 27 7 6.5072 -5.6330 4.3453 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.4622 -0.7386 1.9895 36 1 4.4663 -0.1651 3.3517 37 1 4.1564 -1.5015 4.4862 38 1 2.7944 -0.5951 3.7856 39 1 5.6494 -2.0829 1.4981 40 1 7.3111 -3.6717 1.9180 41 1 9.2229 -5.0240 2.5115 42 1 12.7748 -7.1084 1.7321 43 1 8.5435 -7.8942 5.6628 44 1 6.2611 -7.0440 5.8480 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001467115577.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:22 Heat of formation + Delta-G solvation = -29.829276 kcal Electronic energy + Delta-G solvation = -26419.238879 eV Core-core repulsion = 22564.747932 eV Total energy + Delta-G solvation = -3854.490947 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.63355 -39.71965 -38.27620 -36.44653 -35.09232 -34.21682 -33.78129 -32.24213 -31.27547 -30.27902 -28.50767 -27.66670 -25.98556 -24.91720 -22.42015 -22.35005 -21.32630 -20.52338 -20.13158 -18.77181 -17.74642 -17.14329 -16.78709 -16.01051 -15.69705 -15.53797 -15.07704 -14.89366 -14.71047 -14.51369 -14.15536 -13.94808 -13.58426 -13.47124 -13.11458 -12.99315 -12.88148 -12.78634 -12.66352 -12.54738 -12.42392 -11.82832 -11.80455 -11.57719 -11.40261 -10.95721 -10.82208 -10.66168 -10.09586 -10.04181 -9.92778 -9.69524 -9.50229 -9.36122 -9.02406 -8.19811 -7.87074 -7.24002 -7.02710 -4.72270 2.29328 2.40189 2.50320 2.65051 3.03199 3.06709 3.15304 3.27083 3.67938 3.90711 4.25733 4.35695 4.48897 4.61427 4.61785 4.80171 4.88786 4.98787 5.12313 5.23634 5.33326 5.33878 5.42313 5.49062 5.57559 5.66098 5.73453 5.82511 5.98953 6.10609 6.26117 6.36369 6.42245 6.47122 6.57829 6.94545 7.06087 7.10558 7.20408 7.30831 7.66324 7.84113 7.95495 8.19410 8.23486 8.45546 8.67285 8.96675 9.48884 9.98742 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.022158 B = 0.002696 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.349006 B =10382.646723 C =11240.931841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.135 3.865 3 C -0.164 4.164 4 N -0.724 5.724 5 C 0.514 3.486 6 O -0.534 6.534 7 C 0.148 3.852 8 H 0.115 0.885 9 C -0.159 4.159 10 N -0.737 5.737 11 C 0.698 3.302 12 O -0.529 6.529 13 N -0.670 5.670 14 C 0.387 3.613 15 C -0.322 4.322 16 C 0.129 3.871 17 C -0.437 4.437 18 H 0.096 0.904 19 C 0.084 3.916 20 N -0.804 5.804 21 Si 0.918 3.082 22 H -0.271 1.271 23 H -0.292 1.292 24 H -0.244 1.244 25 C -0.271 4.271 26 C 0.129 3.871 27 N -0.553 5.553 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.057 0.943 35 H 0.402 0.598 36 H 0.061 0.939 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.402 0.598 40 H 0.405 0.595 41 H 0.108 0.892 42 H 0.287 0.713 43 H 0.110 0.890 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.948 15.297 -5.190 24.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.031 3.969 3 C -0.222 4.222 4 N -0.377 5.377 5 C 0.300 3.700 6 O -0.410 6.410 7 C 0.038 3.962 8 H 0.133 0.867 9 C -0.218 4.218 10 N -0.397 5.397 11 C 0.397 3.603 12 O -0.400 6.400 13 N -0.318 5.318 14 C 0.159 3.841 15 C -0.348 4.348 16 C 0.121 3.879 17 C -0.467 4.467 18 H 0.113 0.887 19 C -0.136 4.136 20 N -0.429 5.429 21 Si 0.745 3.255 22 H -0.197 1.197 23 H -0.219 1.219 24 H -0.168 1.168 25 C -0.294 4.294 26 C -0.023 4.023 27 N -0.272 5.272 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.106 0.894 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.237 0.763 36 H 0.080 0.920 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.237 0.763 40 H 0.240 0.760 41 H 0.126 0.874 42 H 0.098 0.902 43 H 0.128 0.872 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -19.758 15.142 -5.126 25.415 hybrid contribution 1.003 0.279 -1.202 1.590 sum -18.755 15.421 -6.328 25.092 Atomic orbital electron populations 1.22082 0.93960 1.02817 1.03015 1.20966 0.94068 0.93079 0.88789 1.22189 1.02233 0.95661 1.02126 1.46049 1.17724 1.56865 1.17033 1.20777 0.81554 0.78207 0.89491 1.90700 1.56124 1.59336 1.34843 1.20478 0.85976 0.97532 0.92183 0.86715 1.22168 1.02390 0.98898 0.98347 1.44899 1.16518 1.34183 1.44110 1.15935 0.82200 0.80011 0.82121 1.91016 1.55214 1.59629 1.34148 1.42597 1.16070 1.37405 1.35680 1.17742 0.88665 0.87492 0.90250 1.21209 0.95228 1.06807 1.11547 1.17700 0.92772 0.88187 0.89281 1.19499 0.95195 1.35144 0.96889 0.88652 1.26184 0.94716 0.91130 1.01540 1.69609 1.09846 1.35216 1.28208 0.86229 0.81866 0.78561 0.78858 1.19714 1.21930 1.16767 1.21682 0.95248 1.05595 1.06909 1.21626 0.93691 0.91690 0.95255 1.67309 1.36239 1.14100 1.09550 0.91947 0.90853 0.91823 0.89358 0.91999 0.91609 0.92393 0.76311 0.91977 0.90179 0.91438 0.76266 0.76005 0.87423 0.90220 0.87206 0.85359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.70 9.38 37.15 0.35 -0.35 16 2 C 0.14 0.92 3.18 -67.93 -0.22 0.70 16 3 C -0.16 -1.05 9.48 37.16 0.35 -0.70 16 4 N -0.72 -5.30 4.97 -53.81 -0.27 -5.56 16 5 C 0.51 5.53 7.19 -10.98 -0.08 5.46 16 6 O -0.53 -7.52 15.50 5.56 0.09 -7.44 16 7 C 0.15 1.69 2.99 -69.08 -0.21 1.48 16 8 H 0.12 1.38 7.58 -51.93 -0.39 0.98 16 9 C -0.16 -1.51 9.38 37.16 0.35 -1.16 16 10 N -0.74 -10.39 4.95 -59.82 -0.30 -10.69 16 11 C 0.70 12.94 8.49 -86.92 -0.74 12.20 16 12 O -0.53 -11.59 14.26 5.29 0.08 -11.51 16 13 N -0.67 -12.93 5.40 -15.86 -0.09 -13.01 16 14 C 0.39 9.03 7.42 -154.67 -1.15 7.88 16 15 C -0.32 -7.76 6.95 -38.45 -0.27 -8.03 16 16 C 0.13 3.27 5.17 -106.55 -0.55 2.72 16 17 C -0.44 -11.59 9.67 -37.65 -0.36 -11.95 16 18 H 0.10 2.63 8.06 -52.49 -0.42 2.20 16 19 C 0.08 2.16 5.48 -17.34 -0.10 2.07 16 20 N -0.80 -20.93 13.92 55.55 0.77 -20.16 16 21 Si 0.92 20.53 24.42 -169.99 -4.15 16.38 16 22 H -0.27 -5.71 6.67 56.52 0.38 -5.33 16 23 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.24 -5.74 6.65 56.52 0.38 -5.36 16 25 C -0.27 -6.34 9.85 -39.07 -0.38 -6.73 16 26 C 0.13 2.93 11.10 -18.04 -0.20 2.73 16 27 N -0.55 -13.48 7.85 -12.76 -0.10 -13.58 16 28 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.09 0.78 7.58 -51.93 -0.39 0.38 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.40 1.93 8.02 -40.82 -0.33 1.60 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.07 0.43 7.56 -51.93 -0.39 0.03 16 39 H 0.40 5.20 7.81 -40.82 -0.32 4.88 16 40 H 0.41 6.51 8.71 -40.82 -0.36 6.15 16 41 H 0.11 2.50 4.43 -52.49 -0.23 2.26 16 42 H 0.29 6.76 8.29 -40.82 -0.34 6.42 16 43 H 0.11 2.36 8.06 -52.48 -0.42 1.94 16 44 H 0.13 2.50 8.06 -52.49 -0.42 2.08 16 LS Contribution 366.74 15.07 5.53 5.53 Total: -1.00 -33.39 366.74 -7.89 -41.27 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: -6.25 Total: 12.44 kcal Atomic # 6 Polarization: 9.53 SS G_CDS: -3.20 Total: 6.33 kcal Atomic # 7 Polarization: -63.03 SS G_CDS: 0.02 Total: -63.00 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: 0.16 Total: -18.95 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -4.15 Total: 16.38 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.39 -7.89 -41.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001467115577.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.445 kcal (2) G-P(sol) polarization free energy of solvation -33.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds