Wall clock time and date at job start Tue Mar 31 2020 12:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47309 * 2 1 4 4 N 1.46501 * 109.47494 * 119.99895 * 2 1 3 5 5 C 1.34779 * 119.99900 * 84.99656 * 4 2 1 6 6 O 1.21276 * 120.00195 * 0.02562 * 5 4 2 7 7 C 1.50702 * 119.99718 * 180.02562 * 5 4 2 8 8 H 1.08994 * 109.46923 * 299.99578 * 7 5 4 9 9 C 1.52997 * 109.47004 * 60.00211 * 7 5 4 10 10 N 1.46502 * 109.46860 * 180.02562 * 7 5 4 11 11 C 1.34772 * 120.00117 * 155.00167 * 10 7 5 12 12 O 1.21580 * 119.99946 * 359.97438 * 11 10 7 13 13 N 1.34777 * 119.99919 * 179.97438 * 11 10 7 14 14 C 1.39466 * 119.99582 * 175.05874 * 13 11 10 15 15 C 1.38647 * 119.64245 * 174.21890 * 14 13 11 16 16 C 1.40826 * 118.66903 * 179.71896 * 15 14 13 17 17 C 1.41538 * 120.99312 * 179.97438 * 16 15 14 18 18 H 1.07997 * 120.00344 * 147.47416 * 17 16 15 19 19 C 1.40032 * 120.00277 * 327.47337 * 17 16 15 20 20 N 1.30749 * 119.99828 * 359.81920 * 19 17 16 21 21 Si 1.86803 * 120.00143 * 179.82267 * 19 17 16 22 22 H 1.48498 * 109.47116 * 60.00023 * 21 19 17 23 23 H 1.48500 * 109.46965 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.46972 * 299.99577 * 21 19 17 25 25 C 1.41160 * 118.00569 * 0.02562 * 16 15 14 26 26 C 1.36594 * 119.13059 * 0.02562 * 25 16 15 27 27 N 1.32061 * 121.25622 * 359.97438 * 26 25 16 28 28 H 1.08994 * 109.47207 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47090 * 300.00024 * 1 2 3 30 30 H 1.09005 * 109.47220 * 59.99827 * 1 2 3 31 31 H 1.08999 * 109.47090 * 239.99976 * 2 1 3 32 32 H 1.08998 * 109.47199 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.46819 * 299.99934 * 3 2 1 34 34 H 1.08999 * 109.47064 * 59.99960 * 3 2 1 35 35 H 0.97001 * 119.99849 * 265.00531 * 4 2 1 36 36 H 1.08994 * 109.47797 * 59.99902 * 9 7 5 37 37 H 1.09005 * 109.46598 * 179.97438 * 9 7 5 38 38 H 1.08997 * 109.46974 * 299.99212 * 9 7 5 39 39 H 0.97002 * 119.99684 * 334.99434 * 10 7 5 40 40 H 0.96998 * 119.99976 * 355.06156 * 13 11 10 41 41 H 1.07994 * 120.66688 * 359.74394 * 15 14 13 42 42 H 0.96994 * 119.99357 * 179.97438 * 20 19 17 43 43 H 1.08000 * 120.43546 * 179.97438 * 25 16 15 44 44 H 1.07998 * 119.36918 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1471 -2.0322 1.1944 6 8 1.8590 -2.6677 0.2025 7 6 2.6490 -2.7426 2.4251 8 1 3.6481 -2.3826 2.6703 9 6 1.7045 -2.4634 3.5959 10 7 2.6989 -4.1844 2.1703 11 6 3.5461 -4.9637 2.8714 12 8 4.2693 -4.4700 3.7148 13 7 3.5916 -6.2902 2.6374 14 6 4.5387 -7.0808 3.2877 15 6 4.5031 -8.4584 3.1354 16 6 5.4729 -9.2366 3.7965 17 6 5.4820 -10.6468 3.6758 18 1 6.4180 -11.1849 3.7015 19 6 4.2775 -11.3443 3.5228 20 7 3.1440 -10.6932 3.4951 21 14 4.2900 -13.2050 3.3585 22 1 4.9004 -13.8051 4.5719 23 1 2.8971 -13.6982 3.2101 24 1 5.0822 -13.5910 2.1632 25 6 6.4349 -8.5681 4.5841 26 6 6.3894 -7.2059 4.6751 27 7 5.4653 -6.5072 4.0412 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 2.2490 -0.1822 1.9895 36 1 0.7054 -2.8234 3.3507 37 1 2.0673 -2.9776 4.4859 38 1 1.6678 -1.3906 3.7853 39 1 2.1221 -4.5783 1.4972 40 1 2.9657 -6.6949 2.0166 41 1 3.7470 -8.9254 2.5217 42 1 2.3097 -11.1764 3.3888 43 1 7.1963 -9.1263 5.1085 44 1 7.1233 -6.6905 5.2770 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001467115596.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:25 Heat of formation + Delta-G solvation = -32.541480 kcal Electronic energy + Delta-G solvation = -26252.487907 eV Core-core repulsion = 22397.879349 eV Total energy + Delta-G solvation = -3854.608557 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.51547 -39.51546 -38.01867 -36.36689 -34.95548 -34.09964 -33.67782 -32.14513 -30.50770 -30.08571 -28.20854 -27.61724 -25.94368 -24.82909 -22.35889 -21.85586 -21.26364 -20.47093 -20.03699 -18.54775 -17.65075 -16.92564 -16.68839 -15.76979 -15.59551 -15.30943 -15.00139 -14.57057 -14.55301 -14.20514 -14.14380 -13.79371 -13.48381 -13.31048 -12.92278 -12.77509 -12.71195 -12.58209 -12.52455 -12.46922 -12.23579 -11.76935 -11.70714 -11.38303 -11.34614 -11.17561 -10.86923 -10.26342 -10.12458 -9.99776 -9.72545 -9.59088 -9.43277 -9.35447 -8.88407 -7.85254 -7.74431 -6.97576 -6.67137 -4.59857 2.37690 2.59274 2.72797 2.86128 3.04774 3.07439 3.21192 3.26910 3.86087 3.91398 4.33584 4.51120 4.60312 4.67208 4.76250 4.85333 4.98639 5.08559 5.17021 5.28860 5.38134 5.42429 5.54066 5.66673 5.69697 5.71918 5.87526 5.95788 6.07103 6.17606 6.55593 6.59513 6.66169 6.81575 7.00309 7.18248 7.18658 7.32275 7.44292 7.52589 7.91765 7.93430 8.15201 8.41242 8.49552 8.76284 8.81447 9.17473 9.72574 10.19302 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024329 B = 0.002393 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.614969 B =11696.326829 C =12415.832793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.135 3.865 3 C -0.161 4.161 4 N -0.724 5.724 5 C 0.515 3.485 6 O -0.534 6.534 7 C 0.149 3.851 8 H 0.114 0.886 9 C -0.159 4.159 10 N -0.738 5.738 11 C 0.697 3.303 12 O -0.536 6.536 13 N -0.665 5.665 14 C 0.353 3.647 15 C -0.234 4.234 16 C 0.143 3.857 17 C -0.459 4.459 18 H 0.080 0.920 19 C 0.073 3.927 20 N -0.804 5.804 21 Si 0.917 3.083 22 H -0.265 1.265 23 H -0.279 1.279 24 H -0.264 1.264 25 C -0.277 4.277 26 C 0.116 3.884 27 N -0.549 5.549 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.088 0.912 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.402 0.598 36 H 0.061 0.939 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.401 0.599 40 H 0.406 0.594 41 H 0.134 0.866 42 H 0.280 0.720 43 H 0.102 0.898 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.199 18.362 -5.427 20.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.031 3.969 3 C -0.219 4.219 4 N -0.377 5.377 5 C 0.300 3.700 6 O -0.410 6.410 7 C 0.039 3.961 8 H 0.132 0.868 9 C -0.218 4.218 10 N -0.398 5.398 11 C 0.397 3.603 12 O -0.407 6.407 13 N -0.313 5.313 14 C 0.126 3.874 15 C -0.260 4.260 16 C 0.134 3.866 17 C -0.491 4.491 18 H 0.098 0.902 19 C -0.144 4.144 20 N -0.430 5.430 21 Si 0.742 3.258 22 H -0.190 1.190 23 H -0.204 1.204 24 H -0.189 1.189 25 C -0.301 4.301 26 C -0.038 4.038 27 N -0.267 5.267 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.106 0.894 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.237 0.763 36 H 0.080 0.920 37 H 0.098 0.902 38 H 0.085 0.915 39 H 0.237 0.763 40 H 0.240 0.760 41 H 0.152 0.848 42 H 0.091 0.909 43 H 0.121 0.879 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.996 19.297 -5.330 21.207 hybrid contribution -0.681 -1.906 -0.345 2.053 sum -7.676 17.392 -5.675 19.839 Atomic orbital electron populations 1.22186 0.95177 1.02756 1.02077 1.20960 0.94242 0.92854 0.88850 1.22082 1.01889 0.94918 1.02968 1.46050 1.67924 1.06772 1.16997 1.20795 0.77117 0.82538 0.89537 1.90697 1.49564 1.65859 1.34843 1.20453 1.01990 0.81652 0.92050 0.86795 1.22168 0.99311 1.01890 0.98441 1.44896 1.45029 1.05985 1.43907 1.15963 0.80803 0.81494 0.82043 1.90993 1.43182 1.72470 1.34088 1.42511 1.36059 1.05776 1.46935 1.17993 0.89002 0.87113 0.93265 1.21710 1.06636 0.89388 1.08231 1.17600 0.88930 0.93409 0.86629 1.19491 0.93755 0.91214 1.44614 0.90197 1.25918 0.95033 1.01260 0.92150 1.69715 0.98779 1.37962 1.36593 0.86218 0.78045 0.81649 0.79881 1.18998 1.20359 1.18910 1.21757 1.05829 0.95175 1.07297 1.21478 0.94900 0.91096 0.96367 1.67158 1.05929 1.39631 1.14031 0.91989 0.92427 0.91642 0.89362 0.91827 0.90896 0.91969 0.76340 0.92016 0.90243 0.91528 0.76331 0.75950 0.84829 0.90906 0.87946 0.85975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.12 9.48 37.16 0.35 -0.77 16 2 C 0.14 0.98 3.18 -67.93 -0.22 0.77 16 3 C -0.16 -0.76 9.38 37.16 0.35 -0.41 16 4 N -0.72 -5.73 4.97 -53.80 -0.27 -6.00 16 5 C 0.51 5.90 7.19 -10.98 -0.08 5.82 16 6 O -0.53 -7.88 15.50 5.56 0.09 -7.80 16 7 C 0.15 1.83 2.98 -69.08 -0.21 1.62 16 8 H 0.11 1.48 7.57 -51.93 -0.39 1.09 16 9 C -0.16 -1.64 9.38 37.16 0.35 -1.29 16 10 N -0.74 -11.14 4.96 -59.82 -0.30 -11.44 16 11 C 0.70 13.77 8.48 -86.92 -0.74 13.03 16 12 O -0.54 -12.46 14.30 5.30 0.08 -12.38 16 13 N -0.67 -13.62 5.40 -15.86 -0.09 -13.71 16 14 C 0.35 8.73 7.40 -154.67 -1.15 7.59 16 15 C -0.23 -6.03 8.60 -38.45 -0.33 -6.36 16 16 C 0.14 3.80 5.57 -106.55 -0.59 3.21 16 17 C -0.46 -11.93 9.12 -37.65 -0.34 -12.28 16 18 H 0.08 1.98 7.85 -52.49 -0.41 1.57 16 19 C 0.07 1.80 5.41 -17.34 -0.09 1.71 16 20 N -0.80 -20.24 10.69 55.55 0.59 -19.65 16 21 Si 0.92 18.41 29.56 -169.99 -5.02 13.39 16 22 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 23 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 24 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 25 C -0.28 -6.85 9.85 -39.07 -0.38 -7.23 16 26 C 0.12 2.80 11.10 -18.05 -0.20 2.60 16 27 N -0.55 -14.20 7.90 -12.75 -0.10 -14.30 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.09 0.82 7.58 -51.93 -0.39 0.42 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 35 H 0.40 2.17 8.02 -40.82 -0.33 1.84 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.07 0.47 7.56 -51.93 -0.39 0.08 16 39 H 0.40 5.58 7.81 -40.82 -0.32 5.26 16 40 H 0.41 6.99 8.72 -40.82 -0.36 6.64 16 41 H 0.13 3.44 6.25 -52.49 -0.33 3.11 16 42 H 0.28 6.46 8.29 -40.82 -0.34 6.12 16 43 H 0.10 2.31 8.06 -52.49 -0.42 1.89 16 44 H 0.12 2.58 8.06 -52.49 -0.42 2.16 16 LS Contribution 372.63 15.07 5.62 5.62 Total: -1.00 -33.53 372.63 -8.97 -42.50 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: -6.28 Total: 15.76 kcal Atomic # 6 Polarization: 11.28 SS G_CDS: -3.28 Total: 8.00 kcal Atomic # 7 Polarization: -64.93 SS G_CDS: -0.16 Total: -65.09 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: 0.16 Total: -20.18 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -5.02 Total: 13.39 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.53 -8.97 -42.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001467115596.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.957 kcal (2) G-P(sol) polarization free energy of solvation -33.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds