Wall clock time and date at job start Tue Mar 31 2020 12:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46877 * 2 1 4 4 C 1.52997 * 109.47247 * 239.99771 * 2 1 3 5 5 N 1.46502 * 109.47257 * 184.99867 * 4 2 1 6 6 C 1.36929 * 119.99797 * 180.02562 * 5 4 2 7 7 H 1.07996 * 120.00271 * 359.97438 * 6 5 4 8 8 C 1.38813 * 119.99706 * 180.02562 * 6 5 4 9 9 N 1.31620 * 120.00207 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 120.00087 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.47141 * 59.99582 * 10 8 6 12 12 H 1.48496 * 109.47104 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.46844 * 299.99890 * 10 8 6 14 14 N 1.46498 * 109.47048 * 119.99322 * 2 1 3 15 15 C 1.34776 * 120.00135 * 275.00146 * 14 2 1 16 16 O 1.21272 * 120.00220 * 0.02562 * 15 14 2 17 17 C 1.50702 * 119.99690 * 179.72911 * 15 14 2 18 18 N 1.46499 * 109.47006 * 180.27400 * 17 15 14 19 19 C 1.34777 * 120.00335 * 179.97438 * 18 17 15 20 20 O 1.21593 * 119.99659 * 0.02562 * 19 18 17 21 21 N 1.34775 * 120.00603 * 180.02562 * 19 18 17 22 22 C 1.39940 * 120.00293 * 175.37669 * 21 19 18 23 23 C 1.38865 * 120.07214 * 214.81242 * 22 21 19 24 24 C 1.38119 * 119.92845 * 179.77354 * 23 22 21 25 25 C 1.38270 * 120.07072 * 0.50694 * 24 23 22 26 26 C 1.38283 * 120.14332 * 359.74720 * 25 24 23 27 27 C 1.38117 * 120.06499 * 359.97438 * 26 25 24 28 28 H 1.08998 * 109.46758 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47240 * 300.00055 * 1 2 3 30 30 H 1.08995 * 109.47365 * 60.00403 * 1 2 3 31 31 H 1.08996 * 109.46833 * 304.99953 * 4 2 1 32 32 H 1.09001 * 109.46907 * 64.99907 * 4 2 1 33 33 H 0.96995 * 119.99652 * 359.97438 * 5 4 2 34 34 H 0.97000 * 119.99967 * 179.97438 * 9 8 6 35 35 H 0.96999 * 119.99982 * 95.00781 * 14 2 1 36 36 H 1.08998 * 109.47279 * 300.26932 * 17 15 14 37 37 H 1.08997 * 109.47327 * 60.27529 * 17 15 14 38 38 H 0.96999 * 119.99964 * 359.97438 * 18 17 15 39 39 H 0.96997 * 119.99451 * 355.38304 * 21 19 18 40 40 H 1.08001 * 120.03337 * 0.02562 * 23 22 21 41 41 H 1.08001 * 119.96073 * 180.25411 * 24 23 22 42 42 H 1.07997 * 119.93035 * 179.72899 * 25 24 23 43 43 H 1.07992 * 119.96856 * 180.02562 * 26 25 24 44 44 H 1.08002 * 120.03018 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1905 6 6 4.1839 -1.4379 -2.2071 7 1 3.6468 -1.8431 -3.0519 8 6 5.5673 -1.5380 -2.1513 9 7 6.2217 -1.0446 -1.1214 10 14 6.5001 -2.3729 -3.5377 11 1 6.2435 -1.6528 -4.8109 12 1 7.9548 -2.3488 -3.2404 13 1 6.0435 -3.7802 -3.6643 14 7 2.0183 -0.6905 1.1962 15 6 2.1470 -0.0180 2.3571 16 8 1.8582 1.1585 2.4117 17 6 2.6436 -0.7299 3.5892 18 7 2.6878 0.2103 4.7118 19 6 3.1031 -0.2069 5.9242 20 8 3.4415 -1.3635 6.0861 21 7 3.1433 0.6578 6.9572 22 6 3.4813 0.2038 8.2371 23 6 2.8840 0.7689 9.3561 24 6 3.2163 0.3153 10.6177 25 6 4.1504 -0.6930 10.7676 26 6 4.7510 -1.2542 9.6556 27 6 4.4188 -0.8090 8.3910 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 1.6054 -1.7198 -1.2950 32 1 1.7517 -0.1584 -2.1369 33 1 3.9824 -0.4621 -0.4319 34 1 7.1884 -1.1148 -1.0822 35 1 2.2491 -1.6316 1.1528 36 1 1.9697 -1.5520 3.8302 37 1 3.6436 -1.1220 3.4040 38 1 2.4182 1.1330 4.5826 39 1 2.9379 1.5948 6.8135 40 1 2.1573 1.5593 9.2398 41 1 2.7490 0.7516 11.4881 42 1 4.4118 -1.0429 11.7553 43 1 5.4800 -2.0419 9.7759 44 1 4.8885 -1.2474 7.5229 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497875525.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:37 Heat of formation + Delta-G solvation = -22.868151 kcal Electronic energy + Delta-G solvation = -25711.360387 eV Core-core repulsion = 21857.171297 eV Total energy + Delta-G solvation = -3854.189090 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.87436 -39.75310 -38.67672 -36.40521 -34.96844 -34.52781 -33.72154 -31.60100 -31.07233 -30.22904 -29.70351 -27.28900 -25.71290 -23.24039 -22.81519 -22.55912 -21.17905 -20.88520 -20.25920 -18.93956 -18.05700 -17.23316 -16.58457 -16.44893 -16.10896 -16.01763 -15.21444 -15.07872 -14.80823 -14.68415 -14.21645 -14.10241 -13.71926 -13.55635 -13.45834 -13.18390 -13.03342 -12.68563 -12.42450 -12.28086 -12.12071 -11.91103 -11.68378 -11.46096 -10.95799 -10.84784 -10.61758 -10.54378 -10.20883 -10.12635 -9.83450 -9.78970 -9.34416 -9.09985 -8.96905 -8.84893 -8.29259 -7.01795 -5.82525 -3.12836 1.11628 1.24088 2.27282 2.67812 2.93557 3.33826 3.40797 3.45321 3.46492 3.66745 3.99426 4.53082 4.69650 4.75515 4.77229 4.98159 5.19528 5.21323 5.26109 5.34494 5.40146 5.42006 5.45127 5.49133 5.57773 5.82235 5.93096 6.00567 6.09075 6.09670 6.12607 6.18719 6.31593 6.32590 6.38322 6.41927 6.61287 6.68245 6.82229 6.88246 7.63390 7.63778 7.72117 8.28755 8.30933 8.35317 9.47041 10.01814 10.37000 11.39644 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015412 B = 0.002331 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.290800 B =12006.686158 C =13488.289405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.134 3.866 3 H 0.088 0.912 4 C 0.144 3.856 5 N -0.732 5.732 6 C -0.246 4.246 7 H 0.071 0.929 8 C -0.011 4.011 9 N -0.931 5.931 10 Si 0.909 3.091 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.285 1.285 14 N -0.703 5.703 15 C 0.512 3.488 16 O -0.550 6.550 17 C 0.117 3.883 18 N -0.725 5.725 19 C 0.707 3.293 20 O -0.573 6.573 21 N -0.687 5.687 22 C 0.167 3.833 23 C -0.150 4.150 24 C -0.103 4.103 25 C -0.141 4.141 26 C -0.102 4.102 27 C -0.120 4.120 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.026 0.974 32 H 0.035 0.965 33 H 0.385 0.615 34 H 0.257 0.743 35 H 0.408 0.592 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.409 0.591 39 H 0.408 0.592 40 H 0.124 0.876 41 H 0.124 0.876 42 H 0.121 0.879 43 H 0.124 0.876 44 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.782 3.370 20.408 22.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.029 3.971 3 H 0.106 0.894 4 C 0.015 3.985 5 N -0.377 5.377 6 C -0.377 4.377 7 H 0.089 0.911 8 C -0.207 4.207 9 N -0.579 5.579 10 Si 0.740 3.260 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.212 1.212 14 N -0.353 5.353 15 C 0.298 3.702 16 O -0.428 6.428 17 C -0.011 4.011 18 N -0.383 5.383 19 C 0.407 3.593 20 O -0.450 6.450 21 N -0.334 5.334 22 C 0.072 3.928 23 C -0.171 4.171 24 C -0.122 4.122 25 C -0.160 4.160 26 C -0.121 4.121 27 C -0.140 4.140 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.043 0.957 32 H 0.052 0.948 33 H 0.220 0.780 34 H 0.066 0.934 35 H 0.243 0.757 36 H 0.116 0.884 37 H 0.123 0.877 38 H 0.246 0.754 39 H 0.244 0.756 40 H 0.142 0.858 41 H 0.142 0.858 42 H 0.139 0.861 43 H 0.142 0.858 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -9.668 3.063 20.297 22.690 hybrid contribution 0.622 0.118 -0.796 1.017 sum -9.046 3.181 19.502 21.732 Atomic orbital electron populations 1.22100 0.95326 1.01991 1.02202 1.21293 0.93423 0.98024 0.84347 0.89396 1.20994 0.86925 0.97052 0.93482 1.42338 0.99668 1.70362 1.25308 1.19161 0.89420 1.29812 0.99274 0.91146 1.24762 0.96461 1.01439 0.98086 1.69648 1.07410 1.50599 1.30236 0.86251 0.78981 0.79257 0.81553 1.21254 1.21675 1.21208 1.45887 1.65749 1.14665 1.09037 1.20341 0.77654 0.87314 0.84927 1.90655 1.51246 1.15879 1.85057 1.20967 1.04313 0.91898 0.83907 1.44694 1.70901 1.15112 1.07628 1.15756 0.78627 0.84696 0.80175 1.90949 1.54142 1.16870 1.83011 1.42535 1.72902 1.11756 1.06237 1.17531 0.95199 0.97136 0.82957 1.20877 1.01353 1.03066 0.91773 1.20897 0.97828 0.97056 0.96417 1.21130 0.98292 0.97778 0.98752 1.21100 0.99519 0.99459 0.91987 1.21415 0.96396 0.97582 0.98629 0.92458 0.92467 0.91529 0.95654 0.94775 0.78047 0.93360 0.75661 0.88382 0.87685 0.75360 0.75623 0.85829 0.85836 0.86144 0.85752 0.83961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.99 9.48 37.16 0.35 -1.63 16 2 C 0.13 2.09 2.73 -67.93 -0.19 1.90 16 3 H 0.09 1.56 7.58 -51.93 -0.39 1.17 16 4 C 0.14 2.66 5.82 -4.04 -0.02 2.63 16 5 N -0.73 -17.56 5.43 -59.91 -0.33 -17.88 16 6 C -0.25 -6.64 9.99 -15.06 -0.15 -6.79 16 7 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 8 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 9 N -0.93 -27.63 13.06 55.49 0.72 -26.90 16 10 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 13 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 14 N -0.70 -10.26 4.52 -53.81 -0.24 -10.50 16 15 C 0.51 7.45 7.86 -10.98 -0.09 7.37 16 16 O -0.55 -9.24 15.33 5.56 0.09 -9.15 16 17 C 0.12 1.47 6.15 -5.19 -0.03 1.44 16 18 N -0.73 -8.70 5.53 -66.42 -0.37 -9.07 16 19 C 0.71 9.22 8.41 -86.92 -0.73 8.49 16 20 O -0.57 -9.32 13.78 5.28 0.07 -9.25 16 21 N -0.69 -7.04 5.34 -14.22 -0.08 -7.11 16 22 C 0.17 1.83 6.30 -83.69 -0.53 1.30 16 23 C -0.15 -1.32 9.97 -39.39 -0.39 -1.71 16 24 C -0.10 -0.83 10.04 -39.61 -0.40 -1.23 16 25 C -0.14 -1.19 10.04 -39.55 -0.40 -1.59 16 26 C -0.10 -1.01 10.04 -39.61 -0.40 -1.41 16 27 C -0.12 -1.44 8.70 -39.39 -0.34 -1.78 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.39 9.87 7.33 -40.82 -0.30 9.57 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.41 5.65 8.60 -40.82 -0.35 5.30 16 36 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.11 1.41 8.14 -51.93 -0.42 0.98 16 38 H 0.41 4.50 7.46 -40.82 -0.30 4.20 16 39 H 0.41 2.92 8.84 -40.82 -0.36 2.56 16 40 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 41 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 42 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 43 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 44 H 0.14 1.97 6.22 -52.49 -0.33 1.64 16 LS Contribution 376.29 15.07 5.67 5.67 Total: -1.00 -33.72 376.29 -9.12 -42.84 By element: Atomic # 1 Polarization: 24.00 SS G_CDS: -6.23 Total: 17.77 kcal Atomic # 6 Polarization: 9.99 SS G_CDS: -3.41 Total: 6.58 kcal Atomic # 7 Polarization: -71.18 SS G_CDS: -0.29 Total: -71.47 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: 0.16 Total: -18.40 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.72 -9.12 -42.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497875525.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.975 kcal (2) G-P(sol) polarization free energy of solvation -33.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds