Wall clock time and date at job start Tue Mar 31 2020 12:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47141 * 2 1 4 4 C 1.53002 * 109.46832 * 119.99539 * 2 1 3 5 5 N 1.46503 * 109.46825 * 174.99907 * 4 2 1 6 6 C 1.36938 * 120.00031 * 180.02562 * 5 4 2 7 7 H 1.08010 * 119.99841 * 0.02562 * 6 5 4 8 8 C 1.38811 * 120.00048 * 180.02562 * 6 5 4 9 9 N 1.31610 * 119.99852 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99859 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47116 * 59.99861 * 10 8 6 12 12 H 1.48495 * 109.47167 * 179.97438 * 10 8 6 13 13 H 1.48504 * 109.47006 * 299.99809 * 10 8 6 14 14 N 1.46494 * 109.47000 * 239.99765 * 2 1 3 15 15 C 1.34778 * 120.00081 * 85.00512 * 14 2 1 16 16 O 1.21283 * 119.99964 * 359.97438 * 15 14 2 17 17 C 1.50703 * 119.99836 * 179.97438 * 15 14 2 18 18 N 1.46502 * 109.46764 * 179.97438 * 17 15 14 19 19 C 1.34780 * 119.99919 * 179.97438 * 18 17 15 20 20 O 1.21587 * 119.99639 * 359.97438 * 19 18 17 21 21 N 1.34773 * 119.99709 * 179.97438 * 19 18 17 22 22 C 1.39952 * 119.99734 * 185.31876 * 21 19 18 23 23 C 1.38863 * 120.07100 * 33.31030 * 22 21 19 24 24 C 1.38107 * 119.93134 * 179.97438 * 23 22 21 25 25 C 1.38286 * 120.06964 * 359.97438 * 24 23 22 26 26 C 1.38276 * 120.13608 * 0.04779 * 25 24 23 27 27 C 1.38112 * 120.07571 * 359.95397 * 26 25 24 28 28 H 1.09000 * 109.47014 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47249 * 299.99898 * 1 2 3 30 30 H 1.09001 * 109.47220 * 60.00120 * 1 2 3 31 31 H 1.09000 * 109.47492 * 295.00351 * 4 2 1 32 32 H 1.09005 * 109.47166 * 55.00648 * 4 2 1 33 33 H 0.97001 * 120.00209 * 0.02562 * 5 4 2 34 34 H 0.97005 * 119.99963 * 180.02562 * 9 8 6 35 35 H 0.96999 * 120.00021 * 264.99928 * 14 2 1 36 36 H 1.08995 * 109.47102 * 59.99612 * 17 15 14 37 37 H 1.08999 * 109.47042 * 299.99266 * 17 15 14 38 38 H 0.97000 * 120.00322 * 359.97438 * 18 17 15 39 39 H 0.96998 * 120.00594 * 5.32027 * 21 19 18 40 40 H 1.08008 * 120.03242 * 359.71162 * 23 22 21 41 41 H 1.08003 * 119.96669 * 179.97438 * 24 23 22 42 42 H 1.08004 * 119.93091 * 180.02562 * 25 24 23 43 43 H 1.08004 * 119.95999 * 179.97438 * 26 25 24 44 44 H 1.07992 * 120.03641 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1907 6 6 4.1838 -1.4387 2.2069 7 1 3.6466 -1.8446 3.0514 8 6 5.5672 -1.5379 2.1515 9 7 6.2217 -1.0438 1.1221 10 14 6.4999 -2.3739 3.5374 11 1 6.0440 -3.7817 3.6622 12 1 7.9546 -2.3498 3.2403 13 1 6.2424 -1.6554 4.8113 14 7 2.0183 -0.6906 -1.1961 15 6 2.1471 -0.0183 -2.3571 16 8 1.8583 1.1584 -2.4117 17 6 2.6500 -0.7287 -3.5874 18 7 2.6987 0.2125 -4.7090 19 6 3.1209 -0.2031 -5.9196 20 8 3.4619 -1.3590 -6.0806 21 7 3.1652 0.6626 -6.9515 22 6 3.4964 0.2076 -8.2329 23 6 3.1223 -1.0672 -8.6369 24 6 3.4502 -1.5131 -9.9022 25 6 4.1499 -0.6914 -10.7667 26 6 4.5242 0.5784 -10.3673 27 6 4.1994 1.0302 -9.1032 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.7516 -0.1582 2.1370 32 1 1.6054 -1.7198 1.2953 33 1 3.9825 -0.4622 0.4320 34 1 7.1885 -1.1134 1.0833 35 1 2.2490 -1.6318 -1.1525 36 1 1.9778 -1.5510 -3.8324 37 1 3.6493 -1.1204 -3.3978 38 1 2.4270 1.1347 -4.5805 39 1 2.9676 1.6011 -6.8062 40 1 2.5792 -1.7109 -7.9607 41 1 3.1599 -2.5047 -10.2168 42 1 4.4048 -1.0422 -11.7559 43 1 5.0710 1.2177 -11.0447 44 1 4.4924 2.0219 -8.7918 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498083094.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:40 Heat of formation + Delta-G solvation = -23.400312 kcal Electronic energy + Delta-G solvation = -25709.433761 eV Core-core repulsion = 21855.221594 eV Total energy + Delta-G solvation = -3854.212167 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.87781 -39.75323 -38.68237 -36.40423 -34.97350 -34.52223 -33.71992 -31.60088 -31.08880 -30.22851 -29.70612 -27.29446 -25.71159 -23.26407 -22.82038 -22.56542 -21.17261 -20.86724 -20.26045 -18.94371 -18.07648 -17.23329 -16.57358 -16.47639 -16.13840 -15.94182 -15.20627 -15.17544 -14.83279 -14.46347 -14.34467 -14.12160 -13.71922 -13.57611 -13.42376 -13.16231 -13.09136 -12.68539 -12.42444 -12.28112 -12.12016 -11.89892 -11.68169 -11.46153 -10.95700 -10.84627 -10.62341 -10.54707 -10.29541 -10.12535 -9.83488 -9.78808 -9.33832 -9.11070 -8.96771 -8.84947 -8.27637 -7.01661 -5.82324 -3.12675 1.11705 1.22928 2.26779 2.67640 2.93170 3.33729 3.40943 3.45430 3.46697 3.67736 3.98511 4.53225 4.68853 4.75507 4.76632 4.97220 5.19466 5.20876 5.25659 5.32970 5.38935 5.40826 5.45231 5.49283 5.57698 5.80531 5.93052 6.00514 6.07153 6.09555 6.12498 6.16979 6.31471 6.32273 6.38273 6.39189 6.61246 6.67863 6.82157 6.86767 7.63371 7.63655 7.71759 8.28587 8.30655 8.35486 9.47205 10.01982 10.37108 11.39843 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015160 B = 0.002316 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.497021 B =12085.140984 C =13364.966136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.134 3.866 3 H 0.088 0.912 4 C 0.144 3.856 5 N -0.732 5.732 6 C -0.246 4.246 7 H 0.071 0.929 8 C -0.011 4.011 9 N -0.931 5.931 10 Si 0.909 3.091 11 H -0.285 1.285 12 H -0.291 1.291 13 H -0.286 1.286 14 N -0.703 5.703 15 C 0.512 3.488 16 O -0.550 6.550 17 C 0.117 3.883 18 N -0.725 5.725 19 C 0.707 3.293 20 O -0.572 6.572 21 N -0.687 5.687 22 C 0.171 3.829 23 C -0.122 4.122 24 C -0.100 4.100 25 C -0.142 4.142 26 C -0.101 4.101 27 C -0.151 4.151 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.035 0.965 32 H 0.026 0.974 33 H 0.385 0.615 34 H 0.257 0.743 35 H 0.408 0.592 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.409 0.591 39 H 0.408 0.592 40 H 0.137 0.863 41 H 0.124 0.876 42 H 0.121 0.879 43 H 0.124 0.876 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.134 3.358 -20.510 23.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.029 3.971 3 H 0.106 0.894 4 C 0.016 3.984 5 N -0.377 5.377 6 C -0.377 4.377 7 H 0.089 0.911 8 C -0.207 4.207 9 N -0.579 5.579 10 Si 0.740 3.260 11 H -0.212 1.212 12 H -0.217 1.217 13 H -0.212 1.212 14 N -0.353 5.353 15 C 0.298 3.702 16 O -0.428 6.428 17 C -0.011 4.011 18 N -0.383 5.383 19 C 0.407 3.593 20 O -0.448 6.448 21 N -0.334 5.334 22 C 0.076 3.924 23 C -0.142 4.142 24 C -0.119 4.119 25 C -0.161 4.161 26 C -0.119 4.119 27 C -0.171 4.171 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.052 0.948 32 H 0.043 0.957 33 H 0.220 0.780 34 H 0.066 0.934 35 H 0.243 0.757 36 H 0.116 0.884 37 H 0.123 0.877 38 H 0.246 0.754 39 H 0.244 0.756 40 H 0.154 0.846 41 H 0.142 0.858 42 H 0.139 0.861 43 H 0.142 0.858 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -10.020 3.049 -20.396 22.928 hybrid contribution 0.754 0.129 0.836 1.134 sum -9.265 3.178 -19.560 21.876 Atomic orbital electron populations 1.22102 0.95324 1.01988 1.02204 1.21293 0.93424 0.98022 0.84348 0.89397 1.20996 0.86925 0.97049 0.93478 1.42343 0.99671 1.70341 1.25332 1.19163 0.89412 1.29801 0.99316 0.91148 1.24761 0.96461 1.01425 0.98088 1.69646 1.07409 1.50572 1.30246 0.86252 0.78985 0.79261 0.81549 1.21210 1.21675 1.21248 1.45885 1.65755 1.14673 1.09016 1.20345 0.77671 0.87310 0.84919 1.90658 1.51307 1.15849 1.85024 1.20968 1.04280 0.91873 0.83972 1.44703 1.70525 1.15195 1.07914 1.15757 0.78563 0.84851 0.80133 1.90968 1.53914 1.16800 1.83168 1.42579 1.72940 1.11881 1.06035 1.17520 0.96636 0.94786 0.83496 1.21230 1.01023 0.95619 0.96347 1.21057 0.97985 0.99626 0.93239 1.21122 1.00454 0.94531 0.99979 1.20910 0.99463 0.96109 0.95465 1.20874 1.00514 1.00729 0.95018 0.92458 0.91536 0.92458 0.94775 0.95659 0.78047 0.93355 0.75660 0.88380 0.87681 0.75352 0.75616 0.84568 0.85794 0.86116 0.85782 0.85740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 9.48 37.16 0.35 -1.63 16 2 C 0.13 2.09 2.73 -67.93 -0.19 1.90 16 3 H 0.09 1.56 7.58 -51.93 -0.39 1.17 16 4 C 0.14 2.66 5.82 -4.04 -0.02 2.64 16 5 N -0.73 -17.59 5.43 -59.90 -0.33 -17.91 16 6 C -0.25 -6.66 9.99 -15.06 -0.15 -6.81 16 7 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 8 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 9 N -0.93 -27.70 13.06 55.49 0.72 -26.97 16 10 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 13 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 14 N -0.70 -10.25 4.52 -53.81 -0.24 -10.50 16 15 C 0.51 7.45 7.86 -10.98 -0.09 7.36 16 16 O -0.55 -9.24 15.33 5.56 0.09 -9.15 16 17 C 0.12 1.47 6.15 -5.19 -0.03 1.44 16 18 N -0.73 -8.71 5.53 -66.41 -0.37 -9.08 16 19 C 0.71 9.25 8.30 -86.92 -0.72 8.52 16 20 O -0.57 -9.39 14.03 5.29 0.07 -9.31 16 21 N -0.69 -7.05 5.35 -14.22 -0.08 -7.13 16 22 C 0.17 1.87 6.28 -83.69 -0.53 1.35 16 23 C -0.12 -1.42 8.66 -39.40 -0.34 -1.76 16 24 C -0.10 -0.97 10.04 -39.61 -0.40 -1.37 16 25 C -0.14 -1.20 10.04 -39.55 -0.40 -1.59 16 26 C -0.10 -0.83 10.04 -39.61 -0.40 -1.23 16 27 C -0.15 -1.37 9.96 -39.40 -0.39 -1.76 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.39 9.89 7.33 -40.82 -0.30 9.59 16 34 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.41 5.65 8.60 -40.82 -0.35 5.29 16 36 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.11 1.43 8.14 -51.93 -0.42 1.00 16 38 H 0.41 4.50 7.46 -40.82 -0.30 4.20 16 39 H 0.41 2.92 8.83 -40.82 -0.36 2.56 16 40 H 0.14 1.76 6.40 -52.48 -0.34 1.43 16 41 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 42 H 0.12 0.74 8.06 -52.48 -0.42 0.32 16 43 H 0.12 0.72 8.06 -52.48 -0.42 0.30 16 44 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 376.57 15.07 5.67 5.67 Total: -1.00 -33.95 376.57 -9.11 -43.07 By element: Atomic # 1 Polarization: 23.84 SS G_CDS: -6.24 Total: 17.60 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: -3.39 Total: 6.67 kcal Atomic # 7 Polarization: -71.30 SS G_CDS: -0.29 Total: -71.59 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: 0.16 Total: -18.46 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.95 -9.11 -43.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498083094.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.667 kcal (2) G-P(sol) polarization free energy of solvation -33.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds