Wall clock time and date at job start Tue Mar 31 2020 12:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34775 * 119.99787 * 2 1 4 4 O 1.21509 * 120.00264 * 0.02562 * 3 2 1 5 5 C 1.48223 * 119.99883 * 180.02562 * 3 2 1 6 6 C 1.39625 * 119.65716 * 180.02562 * 5 3 2 7 7 C 1.38540 * 119.24888 * 179.97438 * 6 5 3 8 8 C 1.38582 * 118.55378 * 359.72099 * 7 6 5 9 9 C 1.39590 * 119.24585 * 0.54260 * 8 7 6 10 10 C 1.48220 * 119.65487 * 179.73021 * 9 8 7 11 11 O 1.21512 * 120.00225 * 359.72022 * 10 9 8 12 12 N 1.34780 * 120.00136 * 179.72712 * 10 9 8 13 13 C 1.46501 * 119.99912 * 179.97438 * 12 10 9 14 14 H 1.08998 * 109.47166 * 324.99132 * 13 12 10 15 15 C 1.53000 * 109.47097 * 84.99955 * 13 12 10 16 16 C 1.53003 * 109.46874 * 204.99590 * 13 12 10 17 17 N 1.46502 * 109.46886 * 54.99785 * 16 13 12 18 18 C 1.46494 * 120.00085 * 269.99763 * 17 16 13 19 19 C 1.36936 * 119.99638 * 90.00054 * 17 16 13 20 20 H 1.07995 * 120.00453 * 339.77458 * 19 17 16 21 21 C 1.38814 * 119.99846 * 160.04559 * 19 17 16 22 22 N 1.31622 * 119.99872 * 344.59496 * 21 19 17 23 23 Si 1.86801 * 119.99939 * 164.58430 * 21 19 17 24 24 H 1.48497 * 109.46796 * 60.00557 * 23 21 19 25 25 H 1.48507 * 109.47248 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47467 * 300.00514 * 23 21 19 27 27 N 1.32348 * 119.65486 * 359.97438 * 5 3 2 28 28 H 1.09005 * 109.46689 * 300.00042 * 1 2 3 29 29 H 1.08996 * 109.47573 * 59.99690 * 1 2 3 30 30 H 1.08996 * 109.47329 * 180.02562 * 1 2 3 31 31 H 0.96998 * 120.00080 * 180.02562 * 2 1 3 32 32 H 1.08004 * 120.37447 * 359.95066 * 6 5 3 33 33 H 1.08003 * 120.72394 * 180.02562 * 7 6 5 34 34 H 1.08004 * 120.38199 * 180.28412 * 8 7 6 35 35 H 0.97002 * 119.99943 * 359.97438 * 12 10 9 36 36 H 1.08999 * 109.46794 * 299.99080 * 15 13 12 37 37 H 1.08997 * 109.47251 * 60.00104 * 15 13 12 38 38 H 1.09008 * 109.46949 * 179.97438 * 15 13 12 39 39 H 1.08997 * 109.47207 * 294.99775 * 16 13 12 40 40 H 1.09003 * 109.47088 * 174.99882 * 16 13 12 41 41 H 1.09003 * 109.47495 * 264.78162 * 18 17 16 42 42 H 1.08999 * 109.47610 * 24.78275 * 18 17 16 43 43 H 1.09005 * 109.47014 * 144.78149 * 18 17 16 44 44 H 0.97002 * 119.99503 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5313 2.2195 0.0005 5 6 3.6211 1.1672 -0.0006 6 6 4.3120 2.3806 0.0000 7 6 5.6973 2.3707 0.0000 8 6 6.3510 1.1488 0.0053 9 6 5.5989 -0.0271 -0.0010 10 6 6.2888 -1.3389 -0.0014 11 8 7.5029 -1.3869 -0.0013 12 7 5.5694 -2.4787 -0.0019 13 6 6.2513 -3.7753 -0.0028 14 1 7.1652 -3.7047 -0.5926 15 6 6.6003 -4.1690 1.4339 16 6 5.3314 -4.8349 -0.6128 17 7 4.9011 -4.4000 -1.9440 18 6 3.6800 -3.6051 -2.0958 19 6 5.6404 -4.7368 -3.0464 20 1 6.6756 -5.0235 -2.9354 21 6 5.0607 -4.7042 -4.3072 22 7 3.7511 -4.6508 -4.4283 23 14 6.1391 -4.7358 -5.8322 24 1 6.9473 -5.9816 -5.8410 25 1 5.2831 -4.6919 -7.0449 26 1 7.0443 -3.5587 -5.8229 27 7 4.2759 0.0171 -0.0006 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.9500 -0.8400 -0.0004 32 1 3.7724 3.3162 0.0000 33 1 6.2557 3.2952 0.0008 34 1 7.4303 1.1067 0.0101 35 1 4.6001 -2.4404 -0.0016 36 1 7.2557 -3.4142 1.8683 37 1 5.6863 -4.2397 2.0235 38 1 7.1073 -5.1340 1.4332 39 1 4.4581 -4.9688 0.0256 40 1 5.8694 -5.7792 -0.6953 41 1 2.8440 -4.2642 -2.3299 42 1 3.4744 -3.0737 -1.1666 43 1 3.8129 -2.8857 -2.9039 44 1 3.3461 -4.6276 -5.3094 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498441841.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:10 Heat of formation + Delta-G solvation = -5.912601 kcal Electronic energy + Delta-G solvation = -27510.770748 eV Core-core repulsion = 23657.316906 eV Total energy + Delta-G solvation = -3853.453843 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.95064 -39.56801 -38.58300 -36.46176 -34.82461 -34.17423 -32.96505 -31.98943 -31.08507 -30.11175 -27.35349 -26.22392 -25.68205 -24.90030 -24.17802 -22.05899 -21.04610 -20.48237 -20.09795 -18.54961 -17.68333 -16.83132 -16.27031 -16.07695 -15.72094 -15.61543 -15.23937 -15.05524 -14.75560 -14.46191 -13.92430 -13.79118 -13.55509 -13.47963 -13.25193 -12.92439 -12.76918 -12.37506 -12.32721 -12.14784 -12.03210 -11.49069 -11.34553 -10.87015 -10.81238 -10.68215 -10.62858 -10.24499 -10.21572 -10.07475 -9.96206 -9.86863 -9.59242 -9.46969 -9.20833 -8.69807 -8.47511 -6.79835 -5.74712 -3.18092 0.34439 0.74274 2.39806 2.95814 3.09061 3.34355 3.39057 3.44503 3.47095 3.85000 3.86330 4.49305 4.53807 4.67312 4.74797 4.78229 5.11633 5.25379 5.28692 5.32434 5.37787 5.44198 5.57740 5.65343 5.69721 5.76190 5.84281 5.90633 6.04816 6.14365 6.20699 6.25475 6.40072 6.48216 6.60313 6.74214 6.96435 7.16647 7.32254 7.44878 7.64750 7.79497 7.92439 7.99876 8.35380 8.50593 9.20892 9.84238 10.30720 11.30280 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010319 B = 0.004425 C = 0.003894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2712.878255 B = 6325.756365 C = 7189.370406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.712 5.712 3 C 0.575 3.425 4 O -0.536 6.536 5 C 0.076 3.924 6 C -0.096 4.096 7 C -0.087 4.087 8 C -0.092 4.092 9 C 0.091 3.909 10 C 0.568 3.432 11 O -0.541 6.541 12 N -0.679 5.679 13 C 0.113 3.887 14 H 0.087 0.913 15 C -0.158 4.158 16 C 0.143 3.857 17 N -0.598 5.598 18 C 0.170 3.830 19 C -0.253 4.253 20 H 0.068 0.932 21 C 0.003 3.997 22 N -0.908 5.908 23 Si 0.902 3.098 24 H -0.283 1.283 25 H -0.291 1.291 26 H -0.285 1.285 27 N -0.431 5.431 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.081 0.919 31 H 0.415 0.585 32 H 0.152 0.848 33 H 0.150 0.850 34 H 0.154 0.846 35 H 0.406 0.594 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.064 0.936 39 H 0.042 0.958 40 H 0.065 0.935 41 H 0.029 0.971 42 H -0.007 1.007 43 H 0.041 0.959 44 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.829 10.331 12.727 16.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.363 5.363 3 C 0.359 3.641 4 O -0.413 6.413 5 C -0.065 4.065 6 C -0.117 4.117 7 C -0.113 4.113 8 C -0.113 4.113 9 C -0.050 4.050 10 C 0.351 3.649 11 O -0.418 6.418 12 N -0.329 5.329 13 C 0.006 3.994 14 H 0.105 0.895 15 C -0.217 4.217 16 C 0.014 3.986 17 N -0.320 5.320 18 C 0.025 3.975 19 C -0.383 4.383 20 H 0.086 0.914 21 C -0.195 4.195 22 N -0.553 5.553 23 Si 0.732 3.268 24 H -0.209 1.209 25 H -0.217 1.217 26 H -0.212 1.212 27 N -0.146 5.146 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.100 0.900 31 H 0.251 0.749 32 H 0.170 0.830 33 H 0.167 0.833 34 H 0.172 0.828 35 H 0.243 0.757 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.060 0.940 40 H 0.083 0.917 41 H 0.047 0.953 42 H 0.012 0.988 43 H 0.060 0.940 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -2.070 10.186 12.541 16.289 hybrid contribution 0.756 0.429 -1.058 1.369 sum -1.314 10.615 11.484 15.693 Atomic orbital electron populations 1.21627 0.78901 1.02900 1.02335 1.45636 1.07978 1.09116 1.73558 1.17829 0.85570 0.84138 0.76517 1.90776 1.68789 1.31305 1.50424 1.21065 0.94181 0.89443 1.01821 1.22275 0.94745 0.99369 0.95289 1.21650 0.93947 0.98642 0.97030 1.22374 1.02749 0.91673 0.94463 1.21346 0.88888 0.95042 0.99762 1.17743 0.86570 0.83175 0.77396 1.90756 1.12909 1.86887 1.51271 1.45901 1.10847 1.05093 1.71050 1.22055 0.98566 0.83254 0.95566 0.89522 1.22126 1.01166 1.01458 0.96978 1.21051 0.95691 0.94423 0.87393 1.43834 1.27301 1.59949 1.00935 1.20797 0.88551 0.93621 0.94545 1.19126 0.92827 1.41298 0.85040 0.91404 1.24909 0.95426 1.01276 0.97925 1.70066 1.08060 1.54881 1.22291 0.86378 0.79656 0.78107 0.82697 1.20887 1.21686 1.21177 1.67382 1.09522 1.29152 1.08531 0.92081 0.91880 0.90031 0.74894 0.83040 0.83267 0.82810 0.75664 0.92854 0.92939 0.91729 0.94018 0.91716 0.95251 0.98826 0.93995 0.93767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.80 10.70 59.85 0.64 1.44 16 2 N -0.71 -8.23 5.70 -67.92 -0.39 -8.62 16 3 C 0.57 7.79 7.81 -12.16 -0.09 7.69 16 4 O -0.54 -8.33 16.32 5.36 0.09 -8.24 16 5 C 0.08 0.99 6.75 -83.02 -0.56 0.43 16 6 C -0.10 -1.05 9.63 -38.95 -0.38 -1.43 16 7 C -0.09 -0.84 10.16 -39.34 -0.40 -1.24 16 8 C -0.09 -1.11 9.63 -38.95 -0.38 -1.49 16 9 C 0.09 1.34 6.75 -83.03 -0.56 0.78 16 10 C 0.57 9.81 7.78 -12.16 -0.09 9.72 16 11 O -0.54 -10.58 15.98 5.35 0.09 -10.50 16 12 N -0.68 -11.39 4.51 -54.63 -0.25 -11.63 16 13 C 0.11 1.93 2.88 -67.93 -0.20 1.74 16 14 H 0.09 1.74 7.58 -51.93 -0.39 1.35 16 15 C -0.16 -2.18 9.48 37.16 0.35 -1.83 16 16 C 0.14 2.68 5.29 -4.04 -0.02 2.66 16 17 N -0.60 -14.10 2.78 -181.12 -0.50 -14.61 16 18 C 0.17 3.87 8.52 59.84 0.51 4.38 16 19 C -0.25 -6.80 9.67 -15.06 -0.15 -6.95 16 20 H 0.07 1.80 7.87 -52.49 -0.41 1.39 16 21 C 0.00 0.07 5.06 -17.43 -0.09 -0.01 16 22 N -0.91 -25.96 10.67 55.49 0.59 -25.37 16 23 Si 0.90 22.01 29.58 -169.99 -5.03 16.98 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 N -0.43 -6.04 8.71 -6.38 -0.06 -6.09 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.42 4.59 8.16 -40.82 -0.33 4.25 16 32 H 0.15 1.44 7.64 -52.48 -0.40 1.04 16 33 H 0.15 0.90 8.06 -52.48 -0.42 0.48 16 34 H 0.15 1.73 7.64 -52.48 -0.40 1.33 16 35 H 0.41 6.47 5.53 -40.82 -0.23 6.25 16 36 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.80 8.14 -51.92 -0.42 0.38 16 39 H 0.04 0.71 8.07 -51.93 -0.42 0.29 16 40 H 0.06 1.21 8.04 -51.93 -0.42 0.79 16 41 H 0.03 0.73 7.40 -51.93 -0.38 0.35 16 42 H -0.01 -0.12 5.76 -51.93 -0.30 -0.42 16 43 H 0.04 1.08 7.20 -51.93 -0.37 0.70 16 44 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 371.81 15.07 5.60 5.60 Total: -1.00 -32.95 371.81 -7.42 -40.37 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -6.16 Total: 6.20 kcal Atomic # 6 Polarization: 17.31 SS G_CDS: -1.41 Total: 15.91 kcal Atomic # 7 Polarization: -65.72 SS G_CDS: -0.60 Total: -66.32 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: 0.17 Total: -18.74 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.03 Total: 16.98 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.95 -7.42 -40.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498441841.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.457 kcal (2) G-P(sol) polarization free energy of solvation -32.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds