Wall clock time and date at job start Tue Mar 31 2020 12:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34777 * 119.99656 * 2 1 4 4 O 1.21509 * 120.00508 * 0.02562 * 3 2 1 5 5 C 1.48231 * 119.99755 * 180.02562 * 3 2 1 6 6 C 1.39629 * 119.65133 * 180.02562 * 5 3 2 7 7 C 1.38547 * 119.24230 * 179.97438 * 6 5 3 8 8 C 1.38581 * 118.55610 * 359.97438 * 7 6 5 9 9 C 1.39594 * 119.24430 * 0.02562 * 8 7 6 10 10 C 1.48224 * 119.65081 * 180.02562 * 9 8 7 11 11 O 1.21508 * 120.00127 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99974 * 180.02562 * 10 9 8 13 13 C 1.46505 * 119.99901 * 180.02562 * 12 10 9 14 14 H 1.08994 * 109.47114 * 34.99902 * 13 12 10 15 15 C 1.53000 * 109.46714 * 274.99546 * 13 12 10 16 16 C 1.53000 * 109.46746 * 154.99512 * 13 12 10 17 17 N 1.46493 * 109.47495 * 305.00059 * 16 13 12 18 18 C 1.46504 * 119.99727 * 269.99710 * 17 16 13 19 19 C 1.36932 * 120.00209 * 90.00112 * 17 16 13 20 20 H 1.07996 * 120.00087 * 22.28571 * 19 17 16 21 21 C 1.38814 * 119.99915 * 202.28423 * 19 17 16 22 22 N 1.31623 * 120.00233 * 11.50412 * 21 19 17 23 23 Si 1.86801 * 120.00029 * 191.49941 * 21 19 17 24 24 H 1.48507 * 109.47007 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47332 * 120.00067 * 23 21 19 26 26 H 1.48497 * 109.47372 * 240.00388 * 23 21 19 27 27 N 1.32339 * 119.65434 * 359.97438 * 5 3 2 28 28 H 1.09002 * 109.47391 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47031 * 299.99708 * 1 2 3 30 30 H 1.09007 * 109.47624 * 59.99925 * 1 2 3 31 31 H 0.96996 * 120.00274 * 180.02562 * 2 1 3 32 32 H 1.07997 * 120.38128 * 359.94773 * 6 5 3 33 33 H 1.08003 * 120.72074 * 180.02562 * 7 6 5 34 34 H 1.07995 * 120.38141 * 180.02562 * 8 7 6 35 35 H 0.96999 * 119.99604 * 359.97438 * 12 10 9 36 36 H 1.08989 * 109.47043 * 60.00720 * 15 13 12 37 37 H 1.09003 * 109.46724 * 180.02562 * 15 13 12 38 38 H 1.08996 * 109.47023 * 299.99593 * 15 13 12 39 39 H 1.09008 * 109.47244 * 65.00063 * 16 13 12 40 40 H 1.09001 * 109.47016 * 184.99388 * 16 13 12 41 41 H 1.09002 * 109.46444 * 94.22203 * 18 17 16 42 42 H 1.08995 * 109.47007 * 214.21522 * 18 17 16 43 43 H 1.08994 * 109.47392 * 334.22297 * 18 17 16 44 44 H 0.96997 * 119.99952 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5313 2.2196 0.0005 5 6 3.6211 1.1673 -0.0006 6 6 4.3119 2.3807 0.0000 7 6 5.6973 2.3709 0.0000 8 6 6.3511 1.1489 0.0000 9 6 5.5988 -0.0270 -0.0006 10 6 6.2888 -1.3388 0.0000 11 8 7.5029 -1.3867 0.0005 12 7 5.5694 -2.4786 -0.0011 13 6 6.2514 -3.7752 0.0001 14 1 7.1646 -3.7049 0.5909 15 6 6.6021 -4.1681 -1.4364 16 6 5.3308 -4.8350 0.6085 17 7 4.8989 -4.4010 1.9393 18 6 5.6884 -4.7620 3.1195 19 6 3.7574 -3.6580 2.0803 20 1 2.9958 -3.6877 1.3151 21 6 3.5790 -2.8667 3.2067 22 7 4.5869 -2.6495 4.0249 23 14 1.9084 -2.1097 3.5614 24 1 0.9504 -2.5038 2.4973 25 1 1.4145 -2.5939 4.8755 26 1 2.0321 -0.6303 3.5937 27 7 4.2759 0.0172 -0.0006 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.9500 -0.8400 -0.0004 32 1 3.7724 3.3163 0.0000 33 1 6.2556 3.2954 0.0008 34 1 7.4302 1.1069 0.0004 35 1 4.6002 -2.4403 -0.0018 36 1 7.2580 -3.4131 -1.8697 37 1 7.1091 -5.1331 -1.4356 38 1 5.6888 -4.2385 -2.0271 39 1 4.4581 -4.9687 -0.0310 40 1 5.8687 -5.7795 0.6910 41 1 6.3822 -3.9544 3.3532 42 1 5.0220 -4.9250 3.9664 43 1 6.2484 -5.6748 2.9167 44 1 4.4623 -2.0963 4.8118 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498441842.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:13 Heat of formation + Delta-G solvation = -8.731810 kcal Electronic energy + Delta-G solvation = -28234.248660 eV Core-core repulsion = 24380.672568 eV Total energy + Delta-G solvation = -3853.576093 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.69999 -39.32547 -38.34496 -36.31944 -34.62188 -34.04789 -32.74474 -31.76898 -31.09854 -29.85430 -27.16569 -26.20300 -25.63225 -24.68056 -23.96164 -21.94533 -20.95954 -20.33693 -19.73128 -18.35891 -17.51199 -16.67489 -16.06827 -15.87763 -15.65436 -15.40784 -15.04498 -14.89559 -14.60087 -14.25552 -13.81531 -13.65059 -13.45119 -13.26094 -13.02372 -12.86999 -12.60739 -12.24998 -12.21489 -12.08309 -11.87369 -11.43029 -11.31949 -10.90065 -10.74472 -10.59388 -10.43646 -10.27495 -10.05676 -10.00299 -9.86514 -9.75306 -9.32967 -9.24027 -8.99572 -8.59664 -8.31442 -6.80709 -5.76887 -3.22458 0.57852 1.00105 2.62142 3.17159 3.30322 3.34188 3.34298 3.41739 3.62555 4.10558 4.14376 4.43070 4.74582 4.91119 4.97359 5.01334 5.27694 5.32089 5.47266 5.50059 5.52351 5.54379 5.63953 5.79230 5.83086 5.93591 5.95843 6.04908 6.13793 6.22571 6.41236 6.41807 6.46754 6.50887 6.72562 6.85034 7.18949 7.36393 7.40650 7.67347 7.70660 7.77518 8.19962 8.26059 8.33682 8.81252 9.17735 9.81824 10.31430 11.27485 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.009705 B = 0.006654 C = 0.004846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2884.544477 B = 4207.186960 C = 5776.541589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.712 5.712 3 C 0.576 3.424 4 O -0.540 6.540 5 C 0.075 3.925 6 C -0.099 4.099 7 C -0.090 4.090 8 C -0.094 4.094 9 C 0.098 3.902 10 C 0.571 3.429 11 O -0.553 6.553 12 N -0.662 5.662 13 C 0.115 3.885 14 H 0.079 0.921 15 C -0.159 4.159 16 C 0.142 3.858 17 N -0.598 5.598 18 C 0.164 3.836 19 C -0.254 4.254 20 H 0.067 0.933 21 C 0.012 3.988 22 N -0.898 5.898 23 Si 0.890 3.110 24 H -0.276 1.276 25 H -0.292 1.292 26 H -0.291 1.291 27 N -0.422 5.422 28 H 0.079 0.921 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.417 0.583 32 H 0.150 0.850 33 H 0.147 0.853 34 H 0.152 0.848 35 H 0.413 0.587 36 H 0.052 0.948 37 H 0.060 0.940 38 H 0.052 0.948 39 H 0.049 0.951 40 H 0.054 0.946 41 H 0.027 0.973 42 H 0.044 0.956 43 H -0.004 1.004 44 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.861 4.097 -10.329 11.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.363 5.363 3 C 0.361 3.639 4 O -0.417 6.417 5 C -0.066 4.066 6 C -0.120 4.120 7 C -0.115 4.115 8 C -0.115 4.115 9 C -0.044 4.044 10 C 0.354 3.646 11 O -0.432 6.432 12 N -0.310 5.310 13 C 0.007 3.993 14 H 0.097 0.903 15 C -0.218 4.218 16 C 0.013 3.987 17 N -0.320 5.320 18 C 0.019 3.981 19 C -0.383 4.383 20 H 0.084 0.916 21 C -0.187 4.187 22 N -0.542 5.542 23 Si 0.720 3.280 24 H -0.201 1.201 25 H -0.219 1.219 26 H -0.218 1.218 27 N -0.136 5.136 28 H 0.098 0.902 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.253 0.747 32 H 0.167 0.833 33 H 0.165 0.835 34 H 0.170 0.830 35 H 0.250 0.750 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.046 0.954 42 H 0.063 0.937 43 H 0.015 0.985 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -0.989 4.022 -10.132 10.946 hybrid contribution -0.627 1.003 0.591 1.322 sum -1.616 5.025 -9.541 10.904 Atomic orbital electron populations 1.21611 0.79220 1.02760 1.02189 1.45651 1.07868 1.09345 1.73421 1.17850 0.85698 0.84046 0.76318 1.90750 1.68887 1.31312 1.50756 1.21044 0.94126 0.89534 1.01881 1.22231 0.94742 0.99254 0.95772 1.21597 0.93906 0.98538 0.97485 1.22341 1.02586 0.91756 0.94841 1.21336 0.88845 0.95036 0.99162 1.17664 0.86386 0.83249 0.77258 1.90715 1.13056 1.87019 1.52392 1.45589 1.11220 1.04356 1.69860 1.21950 0.98004 0.84213 0.95162 0.90318 1.22154 1.01124 1.01156 0.97416 1.21197 0.95612 0.93948 0.87903 1.43900 1.26963 1.61375 0.99782 1.20795 0.94358 0.93940 0.88977 1.19058 0.93912 1.19616 1.05725 0.91560 1.24934 0.96731 0.97928 0.99126 1.70069 1.28606 1.40460 1.15096 0.86420 0.84366 0.79024 0.78151 1.20059 1.21863 1.21751 1.67411 1.09547 1.28849 1.07814 0.90198 0.92114 0.91977 0.74650 0.83254 0.83478 0.83006 0.74970 0.92901 0.92089 0.92920 0.93261 0.92812 0.95428 0.93705 0.98546 0.93909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.07 10.70 59.85 0.64 1.71 16 2 N -0.71 -10.84 5.70 -67.92 -0.39 -11.23 16 3 C 0.58 9.68 7.81 -12.15 -0.09 9.59 16 4 O -0.54 -9.86 16.32 5.36 0.09 -9.77 16 5 C 0.08 1.23 6.75 -83.02 -0.56 0.67 16 6 C -0.10 -1.36 9.63 -38.95 -0.38 -1.73 16 7 C -0.09 -1.08 10.16 -39.34 -0.40 -1.48 16 8 C -0.09 -1.38 9.63 -38.95 -0.38 -1.76 16 9 C 0.10 1.73 6.75 -83.03 -0.56 1.17 16 10 C 0.57 11.31 7.78 -12.16 -0.09 11.22 16 11 O -0.55 -11.94 15.98 5.36 0.09 -11.86 16 12 N -0.66 -12.66 4.48 -54.63 -0.24 -12.90 16 13 C 0.11 2.07 2.88 -67.93 -0.20 1.87 16 14 H 0.08 1.63 7.58 -51.93 -0.39 1.24 16 15 C -0.16 -2.31 9.48 37.16 0.35 -1.95 16 16 C 0.14 2.62 5.36 -4.05 -0.02 2.60 16 17 N -0.60 -13.77 2.82 -181.12 -0.51 -14.28 16 18 C 0.16 3.91 9.01 59.85 0.54 4.44 16 19 C -0.25 -6.24 8.02 -15.06 -0.12 -6.36 16 20 H 0.07 1.56 7.84 -52.49 -0.41 1.15 16 21 C 0.01 0.32 5.13 -17.43 -0.09 0.23 16 22 N -0.90 -25.25 10.59 55.49 0.59 -24.66 16 23 Si 0.89 20.91 29.57 -169.99 -5.03 15.88 16 24 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 26 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 27 N -0.42 -7.35 8.71 -6.38 -0.06 -7.41 16 28 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.42 6.33 8.16 -40.82 -0.33 6.00 16 32 H 0.15 1.80 7.64 -52.49 -0.40 1.40 16 33 H 0.15 1.21 8.06 -52.48 -0.42 0.78 16 34 H 0.15 2.06 7.64 -52.49 -0.40 1.66 16 35 H 0.41 7.94 6.72 -40.82 -0.27 7.66 16 36 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.05 0.86 8.03 -51.92 -0.42 0.44 16 40 H 0.05 0.90 7.86 -51.93 -0.41 0.49 16 41 H 0.03 0.73 7.42 -51.93 -0.39 0.34 16 42 H 0.04 1.15 7.19 -51.93 -0.37 0.78 16 43 H 0.00 -0.08 7.84 -51.93 -0.41 -0.49 16 44 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 373.74 15.07 5.63 5.63 Total: -1.00 -31.75 373.74 -7.49 -39.24 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -6.30 Total: 11.14 kcal Atomic # 6 Polarization: 21.56 SS G_CDS: -1.36 Total: 20.21 kcal Atomic # 7 Polarization: -69.87 SS G_CDS: -0.61 Total: -70.48 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: 0.17 Total: -21.63 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.03 Total: 15.88 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.75 -7.49 -39.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498441842.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.506 kcal (2) G-P(sol) polarization free energy of solvation -31.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds