Wall clock time and date at job start Tue Mar 31 2020 14:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21275 * 120.00306 * 2 1 4 4 N 1.34776 * 119.99613 * 179.97438 * 2 1 3 5 5 C 1.39271 * 120.00039 * 185.45769 * 4 2 1 6 6 C 1.39489 * 120.55607 * 25.28635 * 5 4 2 7 7 C 1.38274 * 118.42739 * 180.26761 * 6 5 4 8 8 C 1.38785 * 119.45888 * 359.72906 * 7 6 5 9 9 N 1.31381 * 121.09624 * 359.97438 * 8 7 6 10 10 C 1.32839 * 121.71469 * 0.02562 * 9 8 7 11 11 C 1.47818 * 119.79556 * 180.02562 * 10 9 8 12 12 O 1.21556 * 120.00277 * 186.52661 * 11 10 9 13 13 N 1.34772 * 119.99785 * 6.52240 * 11 10 9 14 14 C 1.46509 * 120.00193 * 5.29764 * 13 11 10 15 15 C 1.46503 * 120.00126 * 185.29708 * 13 11 10 16 16 C 1.53001 * 109.47138 * 270.00089 * 15 13 11 17 17 C 1.52997 * 109.47232 * 179.97438 * 16 15 13 18 18 N 1.46498 * 109.47296 * 180.02562 * 17 16 15 19 19 C 1.36937 * 120.00115 * 179.97438 * 18 17 16 20 20 H 1.07999 * 119.99889 * 359.97438 * 19 18 17 21 21 C 1.38809 * 119.99842 * 179.97438 * 19 18 17 22 22 N 1.31622 * 120.00319 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99668 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47285 * 60.00187 * 23 21 19 25 25 H 1.48510 * 109.47098 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47570 * 300.00021 * 23 21 19 27 27 H 1.08998 * 109.47553 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47436 * 300.00809 * 1 2 3 29 29 H 1.09007 * 109.46688 * 60.00044 * 1 2 3 30 30 H 0.97000 * 120.00097 * 5.44582 * 4 2 1 31 31 H 1.08001 * 120.78366 * 359.97438 * 6 5 4 32 32 H 1.07998 * 120.26757 * 179.71039 * 7 6 5 33 33 H 1.07995 * 119.44442 * 180.02562 * 8 7 6 34 34 H 1.09000 * 109.47054 * 275.69846 * 14 13 11 35 35 H 1.09008 * 109.46732 * 35.69549 * 14 13 11 36 36 H 1.08994 * 109.47128 * 155.69085 * 14 13 11 37 37 H 1.08993 * 109.46741 * 29.99977 * 15 13 11 38 38 H 1.09003 * 109.47001 * 150.00155 * 15 13 11 39 39 H 1.08999 * 109.46993 * 299.99992 * 16 15 13 40 40 H 1.09005 * 109.46972 * 59.99614 * 16 15 13 41 41 H 1.09008 * 109.46951 * 300.00490 * 17 16 15 42 42 H 1.08997 * 109.46766 * 59.99710 * 17 16 15 43 43 H 0.97001 * 119.99496 * 0.02562 * 18 17 16 44 44 H 0.96995 * 119.99666 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0502 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.5688 -1.1700 0.1152 6 6 4.2312 -0.1107 0.7356 7 6 5.6106 -0.1562 0.8204 8 6 6.2911 -1.2463 0.2963 9 7 5.6464 -2.2362 -0.2787 10 6 4.3223 -2.2391 -0.3847 11 6 3.6403 -3.3753 -1.0395 12 8 2.4431 -3.3290 -1.2452 13 7 4.3458 -4.4627 -1.4086 14 6 5.7644 -4.5693 -1.0580 15 6 3.6944 -5.5382 -2.1604 16 6 3.1128 -6.5629 -1.1844 17 6 2.4319 -7.6857 -1.9696 18 7 1.8745 -8.6666 -1.0351 19 6 1.2132 -9.7672 -1.5112 20 1 1.1023 -9.9118 -2.5757 21 6 0.6856 -10.6968 -0.6257 22 7 0.8203 -10.5203 0.6716 23 14 -0.2158 -12.1984 -1.2754 24 1 0.7017 -12.9960 -2.1282 25 1 -0.6787 -13.0297 -0.1351 26 1 -1.3864 -11.7640 -2.0791 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8898 29 1 -0.3633 0.5139 -0.8901 30 1 1.6991 -2.0054 -0.0788 31 1 3.6800 0.7274 1.1359 32 1 6.1540 0.6502 1.2903 33 1 7.3684 -1.2818 0.3630 34 1 6.3630 -4.0439 -1.8021 35 1 5.9306 -4.1235 -0.0772 36 1 6.0547 -5.6195 -1.0336 37 1 2.8928 -5.1213 -2.7700 38 1 4.4258 -6.0252 -2.8055 39 1 3.9145 -6.9797 -0.5748 40 1 2.3815 -6.0759 -0.5393 41 1 1.6302 -7.2685 -2.5790 42 1 3.1629 -8.1727 -2.6149 43 1 1.9731 -8.5360 -0.0789 44 1 0.4512 -11.1697 1.2903 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498558855.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:45 Heat of formation + Delta-G solvation = -0.237899 kcal Electronic energy + Delta-G solvation = -26481.085772 eV Core-core repulsion = 22627.878003 eV Total energy + Delta-G solvation = -3853.207769 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.55241 -39.89131 -39.05894 -36.47722 -35.31737 -34.71100 -32.93776 -32.03988 -31.38414 -29.79161 -29.15650 -26.87261 -25.87643 -24.43412 -23.79886 -22.61856 -20.99851 -20.90331 -20.07487 -18.32147 -17.54492 -17.44439 -17.04104 -16.72373 -16.04315 -15.61250 -15.52279 -15.27881 -14.70710 -14.49611 -14.28973 -14.02615 -13.76207 -13.62240 -13.25081 -13.11147 -12.99262 -12.92103 -12.81418 -12.60696 -12.44830 -11.91300 -11.86951 -11.26803 -10.92148 -10.82536 -10.75011 -10.48064 -10.39982 -10.31990 -10.07754 -10.03727 -9.70285 -9.42177 -8.84097 -8.80805 -8.48602 -6.89339 -5.73643 -3.02344 0.30633 0.83568 2.21348 2.52555 2.72597 2.87884 3.46034 3.49863 3.51288 3.56191 3.85719 4.29633 4.36097 4.53552 4.61985 4.68222 4.82854 4.95818 5.03180 5.06444 5.19967 5.25728 5.34632 5.49780 5.54627 5.59217 5.65270 5.70439 5.76930 5.81887 5.95143 6.01146 6.08495 6.30653 6.35351 6.40758 6.53550 6.87979 6.89481 7.02153 7.24354 7.44128 7.68124 7.71851 7.99249 8.45394 9.56089 10.14782 10.49401 11.49409 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016325 B = 0.002594 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.751506 B =10789.996481 C =11921.618083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.513 3.487 3 O -0.534 6.534 4 N -0.652 5.652 5 C 0.167 3.833 6 C -0.102 4.102 7 C -0.125 4.125 8 C 0.068 3.932 9 N -0.428 5.428 10 C 0.038 3.962 11 C 0.572 3.428 12 O -0.542 6.542 13 N -0.589 5.589 14 C 0.088 3.912 15 C 0.117 3.883 16 C -0.138 4.138 17 C 0.157 3.843 18 N -0.733 5.733 19 C -0.239 4.239 20 H 0.070 0.930 21 C -0.015 4.015 22 N -0.935 5.935 23 Si 0.908 3.092 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 H 0.084 0.916 28 H 0.101 0.899 29 H 0.100 0.900 30 H 0.430 0.570 31 H 0.160 0.840 32 H 0.143 0.857 33 H 0.165 0.835 34 H 0.060 0.940 35 H 0.090 0.910 36 H 0.064 0.936 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.062 0.938 40 H 0.066 0.934 41 H 0.020 0.980 42 H 0.018 0.982 43 H 0.383 0.617 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.197 24.145 0.248 26.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.303 3.697 3 O -0.411 6.411 4 N -0.304 5.304 5 C 0.066 3.934 6 C -0.130 4.130 7 C -0.145 4.145 8 C -0.094 4.094 9 N -0.139 5.139 10 C -0.102 4.102 11 C 0.360 3.640 12 O -0.421 6.421 13 N -0.318 5.318 14 C -0.055 4.055 15 C -0.005 4.005 16 C -0.177 4.177 17 C 0.029 3.971 18 N -0.377 5.377 19 C -0.370 4.370 20 H 0.088 0.912 21 C -0.211 4.211 22 N -0.584 5.584 23 Si 0.739 3.261 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 H 0.103 0.897 28 H 0.119 0.881 29 H 0.119 0.881 30 H 0.277 0.723 31 H 0.178 0.822 32 H 0.161 0.839 33 H 0.182 0.818 34 H 0.078 0.922 35 H 0.109 0.891 36 H 0.083 0.917 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.038 0.962 42 H 0.036 0.964 43 H 0.217 0.783 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 10.235 23.990 -0.345 26.084 hybrid contribution -0.968 -0.542 0.342 1.161 sum 9.267 23.448 -0.004 25.213 Atomic orbital electron populations 1.21865 0.90064 1.05352 1.05711 1.21193 0.91378 0.82779 0.74383 1.90668 1.70501 1.31588 1.48327 1.44199 1.04581 1.12076 1.69517 1.18684 0.84669 0.95250 0.94822 1.21894 0.94829 0.98889 0.97410 1.22307 0.94324 0.99280 0.98616 1.22848 1.00764 0.89519 0.96251 1.68059 1.07163 1.25644 1.13051 1.20880 0.90072 0.96291 1.02975 1.17765 0.85937 0.81757 0.78586 1.90578 1.14006 1.80804 1.56663 1.47716 1.11791 1.18228 1.54072 1.22144 0.79317 1.01385 1.02649 1.21612 0.97864 0.87109 0.93936 1.22055 1.00518 0.96289 0.98870 1.20538 0.94902 0.88991 0.92710 1.42344 1.66664 1.23756 1.04977 1.19205 1.27230 0.98515 0.92077 0.91200 1.24751 1.01775 0.99287 0.95305 1.69657 1.50941 1.37277 1.00498 0.86247 0.79658 0.82788 0.77375 1.21270 1.21689 1.21257 0.89656 0.88085 0.88099 0.72308 0.82222 0.83947 0.81822 0.92177 0.89141 0.91748 0.89712 0.90095 0.91878 0.91498 0.96212 0.96374 0.78327 0.93493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.15 10.39 36.01 0.37 -0.78 16 2 C 0.51 5.45 7.75 -10.98 -0.09 5.36 16 3 O -0.53 -7.00 14.32 5.56 0.08 -6.92 16 4 N -0.65 -7.44 4.85 -9.60 -0.05 -7.49 16 5 C 0.17 2.00 6.44 -83.35 -0.54 1.46 16 6 C -0.10 -1.05 8.81 -39.10 -0.34 -1.39 16 7 C -0.12 -0.95 10.10 -39.37 -0.40 -1.35 16 8 C 0.07 0.53 11.17 -17.54 -0.20 0.34 16 9 N -0.43 -4.49 6.16 -9.68 -0.06 -4.55 16 10 C 0.04 0.47 6.58 -82.85 -0.55 -0.08 16 11 C 0.57 8.08 7.62 -12.34 -0.09 7.99 16 12 O -0.54 -8.55 13.44 5.32 0.07 -8.48 16 13 N -0.59 -7.67 2.87 -182.70 -0.52 -8.19 16 14 C 0.09 0.91 9.11 59.85 0.55 1.45 16 15 C 0.12 1.61 5.34 -4.04 -0.02 1.59 16 16 C -0.14 -2.34 5.65 -26.73 -0.15 -2.49 16 17 C 0.16 3.24 6.26 -4.04 -0.03 3.21 16 18 N -0.73 -19.29 5.60 -59.91 -0.34 -19.62 16 19 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16 20 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 21 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 22 N -0.93 -28.84 13.06 55.49 0.72 -28.11 16 23 Si 0.91 22.73 29.55 -169.99 -5.02 17.71 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 H 0.08 0.50 7.92 -51.93 -0.41 0.09 16 28 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.10 0.60 8.14 -51.92 -0.42 0.18 16 30 H 0.43 5.01 5.87 -40.82 -0.24 4.77 16 31 H 0.16 1.67 5.93 -52.49 -0.31 1.36 16 32 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 33 H 0.16 0.74 8.06 -52.49 -0.42 0.31 16 34 H 0.06 0.57 7.99 -51.93 -0.41 0.15 16 35 H 0.09 0.94 5.79 -51.92 -0.30 0.64 16 36 H 0.06 0.62 8.03 -51.93 -0.42 0.20 16 37 H 0.08 1.23 7.50 -51.93 -0.39 0.84 16 38 H 0.08 0.96 8.07 -51.93 -0.42 0.54 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 41 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 42 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.38 10.60 7.67 -40.82 -0.31 10.28 16 44 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 367.78 15.07 5.54 5.54 Total: -1.00 -35.17 367.78 -7.44 -42.61 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -6.14 Total: 9.76 kcal Atomic # 6 Polarization: 9.46 SS G_CDS: -1.72 Total: 7.74 kcal Atomic # 7 Polarization: -67.72 SS G_CDS: -0.24 Total: -67.96 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: 0.15 Total: -15.40 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.17 -7.44 -42.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498558855.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.375 kcal (2) G-P(sol) polarization free energy of solvation -35.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds