Wall clock time and date at job start Tue Mar 31 2020 13:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46505 * 109.47090 * 2 1 4 4 C 1.46497 * 119.99827 * 264.99739 * 3 2 1 5 5 C 1.50691 * 109.47092 * 263.14366 * 4 3 2 6 6 H 1.08006 * 120.00311 * 0.02562 * 5 4 3 7 7 C 1.37882 * 119.99969 * 180.02562 * 5 4 3 8 8 N 1.31510 * 119.99966 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00036 * 180.02562 * 7 5 4 10 10 H 1.48509 * 109.47164 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47413 * 119.99695 * 9 7 5 12 12 H 1.48501 * 109.47049 * 239.99788 * 9 7 5 13 13 C 1.34780 * 119.99861 * 84.99079 * 3 2 1 14 14 O 1.21360 * 120.00227 * 4.03982 * 13 3 2 15 15 C 1.49322 * 119.99719 * 184.03128 * 13 3 2 16 16 O 1.21404 * 120.00218 * 354.70398 * 15 13 3 17 17 N 1.34782 * 119.99884 * 174.97923 * 15 13 3 18 18 C 1.40477 * 119.99999 * 179.72278 * 17 15 13 19 19 C 1.40342 * 126.11546 * 359.69837 * 18 17 15 20 20 N 1.30832 * 108.21041 * 179.81319 * 19 18 17 21 21 N 1.40058 * 108.35967 * 0.44134 * 20 19 18 22 22 C 1.46506 * 125.98925 * 179.75686 * 21 20 19 23 23 C 1.53778 * 113.61190 * 194.09147 * 22 21 20 24 24 C 1.53956 * 87.01928 * 220.04427 * 23 22 21 25 25 C 1.53783 * 113.61456 * 96.48278 * 22 21 20 26 26 C 1.35223 * 108.01451 * 359.71454 * 21 20 19 27 27 H 1.09000 * 109.47364 * 299.99826 * 1 2 3 28 28 H 1.09000 * 109.46865 * 60.00125 * 1 2 3 29 29 H 1.08995 * 109.46952 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47364 * 240.00174 * 2 1 3 31 31 H 1.09000 * 109.46865 * 119.99875 * 2 1 3 32 32 H 1.09001 * 109.47346 * 23.14753 * 4 3 2 33 33 H 1.09006 * 109.47169 * 143.14496 * 4 3 2 34 34 H 0.96998 * 120.00185 * 180.02562 * 8 7 5 35 35 H 0.96993 * 120.00019 * 359.72761 * 17 15 13 36 36 H 1.08001 * 125.89773 * 359.97438 * 19 18 17 37 37 H 1.08996 * 112.84823 * 325.28586 * 22 21 20 38 38 H 1.09000 * 113.61216 * 334.56357 * 23 22 21 39 39 H 1.09003 * 113.61241 * 105.46940 * 23 22 21 40 40 H 1.08994 * 113.54217 * 270.81224 * 24 23 22 41 41 H 1.09004 * 113.74390 * 139.93984 * 24 23 22 42 42 H 1.08997 * 113.61380 * 254.52536 * 25 22 21 43 43 H 1.08999 * 113.61731 * 25.43289 * 25 22 21 44 44 H 1.07997 * 126.17792 * 180.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3668 2.0349 -1.2639 5 6 3.8531 1.9316 -1.4898 6 1 4.4760 1.4289 -0.7646 7 6 4.4180 2.4789 -2.6222 8 7 3.6596 3.0906 -3.5055 9 14 6.2604 2.3502 -2.9026 10 1 6.8836 1.6193 -1.7700 11 1 6.5186 1.6167 -4.1677 12 1 6.8437 3.7129 -2.9926 13 6 2.1469 2.0506 1.1628 14 8 1.9285 1.4866 2.2150 15 6 2.5582 3.4860 1.1564 16 8 2.8698 4.0236 0.1134 17 7 2.5889 4.1834 2.3094 18 6 2.9814 5.5322 2.3043 19 6 3.3713 6.2759 1.1798 20 7 3.6590 7.4903 1.5725 21 7 3.4731 7.5613 2.9589 22 6 3.6905 8.7429 3.7973 23 6 3.7367 8.4303 5.3022 24 6 2.9317 9.7255 5.5141 25 6 2.4075 9.5421 4.0801 26 6 3.0570 6.3483 3.3877 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.8399 1.5460 -2.0833 33 1 2.0779 3.0852 -1.2216 34 1 4.0570 3.4753 -4.3024 35 1 2.3400 3.7539 3.1427 36 1 3.4223 5.9098 0.1650 37 1 4.5216 9.3587 3.4535 38 1 3.1916 7.5275 5.5775 39 1 4.7409 8.4652 5.7248 40 1 3.5557 10.6100 5.6411 41 1 2.1570 9.6410 6.2763 42 1 2.3401 10.4732 3.5175 43 1 1.4983 8.9438 4.0207 44 1 2.8260 6.0773 4.4073 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001515908571.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:47 Heat of formation + Delta-G solvation = 54.065237 kcal Electronic energy + Delta-G solvation = -27121.244527 eV Core-core repulsion = 23270.391518 eV Total energy + Delta-G solvation = -3850.853008 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.38128 -40.00962 -38.73714 -37.69393 -35.67012 -34.07438 -32.62488 -31.29027 -30.47202 -29.16705 -27.00151 -26.14192 -25.59631 -24.42809 -22.95906 -22.19528 -21.66115 -20.46683 -19.63503 -18.75810 -17.71440 -16.98483 -16.43990 -16.17021 -15.96201 -15.36441 -15.17479 -14.99297 -14.61370 -14.30606 -14.02185 -13.73056 -13.40752 -13.24208 -13.09190 -12.92373 -12.57235 -12.43824 -12.30240 -11.98189 -11.69340 -11.66834 -11.47308 -11.08589 -10.97599 -10.90311 -10.80396 -10.61159 -10.52934 -10.41756 -10.32383 -9.90146 -9.61093 -9.21275 -8.68373 -8.21920 -7.81432 -7.44566 -5.98770 -4.01227 1.78611 2.25491 2.44071 3.06162 3.12349 3.33842 3.42085 3.45620 3.94245 4.02308 4.11433 4.23028 4.38715 4.41991 4.50808 4.76071 5.01789 5.07774 5.20728 5.26135 5.34701 5.37640 5.45998 5.49715 5.54327 5.55026 5.70876 5.78433 5.80109 5.82037 5.96797 6.17744 6.29033 6.44413 6.55886 6.73700 7.07054 7.15096 7.42268 7.49631 7.63560 7.90731 7.92021 8.15762 8.24745 8.46293 8.73830 9.01228 9.61823 11.09927 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013019 B = 0.003670 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2150.219188 B = 7627.497845 C = 9184.611185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.111 3.889 3 N -0.558 5.558 4 C 0.220 3.780 5 C -0.518 4.518 6 H 0.054 0.946 7 C 0.069 3.931 8 N -0.889 5.889 9 Si 0.892 3.108 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.283 1.283 13 C 0.511 3.489 14 O -0.564 6.564 15 C 0.494 3.506 16 O -0.446 6.446 17 N -0.632 5.632 18 C 0.014 3.986 19 C 0.056 3.944 20 N -0.289 5.289 21 N -0.364 5.364 22 C 0.144 3.856 23 C -0.146 4.146 24 C -0.138 4.138 25 C -0.149 4.149 26 C 0.008 3.992 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.031 0.969 33 H 0.078 0.922 34 H 0.261 0.739 35 H 0.414 0.586 36 H 0.212 0.788 37 H 0.120 0.880 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.089 0.911 44 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.189 8.337 16.667 19.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.012 4.012 3 N -0.288 5.288 4 C 0.101 3.899 5 C -0.556 4.556 6 H 0.072 0.928 7 C -0.133 4.133 8 N -0.528 5.528 9 Si 0.720 3.280 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.209 1.209 13 C 0.293 3.707 14 O -0.445 6.445 15 C 0.275 3.725 16 O -0.314 6.314 17 N -0.280 5.280 18 C -0.091 4.091 19 C -0.131 4.131 20 N -0.109 5.109 21 N -0.149 5.149 22 C 0.042 3.958 23 C -0.185 4.185 24 C -0.176 4.176 25 C -0.188 4.188 26 C -0.139 4.139 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.103 0.897 31 H 0.091 0.909 32 H 0.049 0.951 33 H 0.095 0.905 34 H 0.071 0.929 35 H 0.250 0.750 36 H 0.228 0.772 37 H 0.138 0.862 38 H 0.111 0.889 39 H 0.100 0.900 40 H 0.106 0.894 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.107 0.893 44 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -3.666 9.714 15.860 18.956 hybrid contribution 0.744 -1.119 0.373 1.395 sum -2.921 8.595 16.233 18.599 Atomic orbital electron populations 1.22117 0.96342 1.01602 1.02187 1.21425 0.93727 0.83000 1.03042 1.48315 1.59020 1.12959 1.08496 1.20145 0.96361 0.95576 0.77805 1.21265 0.92142 1.36301 1.05926 0.92783 1.24797 0.97788 0.94861 0.95851 1.69922 1.35049 1.36967 1.10830 0.86547 0.85779 0.77835 0.77862 1.19963 1.21098 1.20887 1.19659 0.79523 0.87013 0.84516 1.90639 1.53122 1.69674 1.31111 1.20317 0.80339 0.88203 0.83593 1.90805 1.41652 1.69586 1.29387 1.42508 1.66515 1.07983 1.10997 1.17752 1.11292 0.86046 0.93987 1.24750 0.98088 0.89142 1.01142 1.77408 1.23800 1.20465 0.89267 1.48191 1.52617 1.08420 1.05644 1.22862 0.99619 0.84886 0.88428 1.23443 1.02124 0.99421 0.93471 1.22733 1.00067 0.97625 0.97130 1.23459 0.97761 1.00919 0.96616 1.21534 1.07108 0.86488 0.98768 0.92678 0.92339 0.92031 0.89727 0.90850 0.95109 0.90492 0.92911 0.75019 0.77211 0.86205 0.88877 0.89964 0.89448 0.90290 0.90304 0.89259 0.81096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.46 10.20 37.16 0.38 -2.08 16 2 C 0.11 1.97 6.08 -4.04 -0.02 1.95 16 3 N -0.56 -11.91 2.49 -175.62 -0.44 -12.35 16 4 C 0.22 5.46 4.74 -5.20 -0.02 5.43 16 5 C -0.52 -14.18 8.36 -34.44 -0.29 -14.47 16 6 H 0.05 1.52 7.81 -52.48 -0.41 1.11 16 7 C 0.07 1.94 5.46 -17.82 -0.10 1.85 16 8 N -0.89 -25.79 13.29 55.43 0.74 -25.05 16 9 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 10 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 13 C 0.51 10.67 7.63 -11.64 -0.09 10.58 16 14 O -0.56 -11.65 16.12 5.49 0.09 -11.56 16 15 C 0.49 10.07 7.74 -11.64 -0.09 9.98 16 16 O -0.45 -10.42 9.54 5.45 0.05 -10.37 16 17 N -0.63 -10.48 5.45 -10.48 -0.06 -10.53 16 18 C 0.01 0.23 6.90 -83.96 -0.58 -0.35 16 19 C 0.06 1.04 10.84 -17.19 -0.19 0.86 16 20 N -0.29 -5.00 12.56 30.72 0.39 -4.62 16 21 N -0.36 -4.90 3.81 -53.86 -0.21 -5.11 16 22 C 0.14 1.35 5.02 -67.12 -0.34 1.01 16 23 C -0.15 -0.94 7.46 -25.83 -0.19 -1.14 16 24 C -0.14 -0.74 8.09 -25.82 -0.21 -0.95 16 25 C -0.15 -1.15 7.88 -25.92 -0.20 -1.35 16 26 C 0.01 0.11 10.73 -16.91 -0.18 -0.07 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.08 1.47 8.03 -51.93 -0.42 1.05 16 31 H 0.07 1.27 7.52 -51.93 -0.39 0.88 16 32 H 0.03 0.79 8.02 -51.93 -0.42 0.37 16 33 H 0.08 2.07 5.37 -51.93 -0.28 1.79 16 34 H 0.26 7.22 8.31 -40.82 -0.34 6.89 16 35 H 0.41 5.80 8.30 -40.82 -0.34 5.46 16 36 H 0.21 4.40 5.92 -52.49 -0.31 4.09 16 37 H 0.12 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.09 0.57 6.32 -51.93 -0.33 0.24 16 39 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.17 1.52 6.70 -52.49 -0.35 1.17 16 LS Contribution 366.84 15.07 5.53 5.53 Total: -1.00 -32.67 366.84 -7.24 -39.90 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -6.18 Total: 6.04 kcal Atomic # 6 Polarization: 13.37 SS G_CDS: -2.12 Total: 11.25 kcal Atomic # 7 Polarization: -58.08 SS G_CDS: 0.42 Total: -57.66 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: 0.14 Total: -21.93 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.67 -7.24 -39.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001515908571.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.966 kcal (2) G-P(sol) polarization free energy of solvation -32.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds