Wall clock time and date at job start Tue Mar 31 2020 12:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46890 * 2 1 4 4 N 1.46898 * 109.47228 * 239.99991 * 2 1 3 5 5 C 1.52999 * 109.47000 * 119.99927 * 2 1 3 6 6 H 1.09008 * 109.55161 * 59.87789 * 5 2 1 7 7 C 1.53296 * 109.51136 * 179.97438 * 5 2 1 8 8 N 1.47152 * 108.38406 * 172.22628 * 7 5 2 9 9 C 1.34776 * 120.98124 * 129.19352 * 8 7 5 10 10 O 1.21577 * 119.99886 * 354.81130 * 9 8 7 11 11 N 1.34771 * 120.00222 * 174.80835 * 9 8 7 12 12 C 1.39245 * 120.00252 * 185.69044 * 11 9 8 13 13 C 1.39686 * 119.57391 * 18.12582 * 12 11 9 14 14 C 1.38649 * 119.49466 * 180.02562 * 13 12 11 15 15 C 1.38353 * 118.66761 * 0.02562 * 14 13 12 16 16 C 1.40568 * 119.13687 * 359.97438 * 15 14 13 17 17 C 1.41337 * 119.79087 * 179.97438 * 16 15 14 18 18 H 1.08006 * 119.99458 * 0.02562 * 17 16 15 19 19 C 1.40024 * 120.00161 * 180.02562 * 17 16 15 20 20 N 1.30744 * 119.99958 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99965 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46836 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.47085 * 120.00055 * 21 19 17 24 24 H 1.48496 * 109.46753 * 240.00119 * 21 19 17 25 25 N 1.31907 * 119.57411 * 197.85993 * 12 11 9 26 26 C 1.47152 * 118.03730 * 309.46937 * 8 7 5 27 27 C 1.53301 * 108.38510 * 50.53317 * 26 8 7 28 28 O 1.42956 * 109.51476 * 299.74997 * 5 2 1 29 29 H 1.08997 * 109.47295 * 299.99861 * 1 2 3 30 30 H 1.08995 * 109.47270 * 59.99978 * 1 2 3 31 31 H 1.09000 * 109.46890 * 179.97438 * 1 2 3 32 32 H 1.00895 * 111.00014 * 300.00515 * 4 2 1 33 33 H 1.00906 * 110.99902 * 63.95177 * 4 2 1 34 34 H 1.08998 * 109.67879 * 52.50761 * 7 5 2 35 35 H 1.09002 * 109.71417 * 291.97009 * 7 5 2 36 36 H 0.97003 * 119.99700 * 5.69739 * 11 9 8 37 37 H 1.07994 * 120.25361 * 0.02562 * 13 12 11 38 38 H 1.07996 * 120.66299 * 180.02562 * 14 13 12 39 39 H 1.08007 * 120.42974 * 179.97438 * 15 14 13 40 40 H 0.97000 * 120.00042 * 179.97438 * 20 19 17 41 41 H 1.09001 * 109.68085 * 170.25662 * 26 8 7 42 42 H 1.08999 * 109.68017 * 290.81280 * 26 8 7 43 43 H 1.08996 * 109.50904 * 187.77527 * 27 26 8 44 44 H 1.09001 * 109.50655 * 67.62281 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0400 -0.7212 1.2493 6 1 1.6756 -1.7486 1.2517 7 6 3.5730 -0.7223 1.2499 8 7 4.0361 -1.2507 2.5428 9 6 4.9471 -2.2422 2.6009 10 8 5.3285 -2.7780 1.5783 11 7 5.4354 -2.6399 3.7924 12 6 6.4612 -3.5799 3.8459 13 6 7.2329 -3.8238 2.7073 14 6 8.2536 -4.7606 2.7623 15 6 8.4769 -5.4298 3.9524 16 6 7.6660 -5.1397 5.0633 17 6 7.8817 -5.8156 6.2858 18 1 8.6679 -6.5519 6.3642 19 6 7.0761 -5.5305 7.3950 20 7 6.1241 -4.6394 7.2999 21 14 7.3617 -6.4232 9.0109 22 1 8.4907 -7.3757 8.8573 23 1 7.6872 -5.4358 10.0711 24 1 6.1340 -7.1683 9.3884 25 7 6.6953 -4.2248 4.9725 26 6 3.4707 -0.6687 3.7704 27 6 1.9427 -0.6703 3.6469 28 8 1.5688 -0.0447 2.4171 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6962 -1.6479 -1.2228 33 1 1.7502 -0.1989 -2.0373 34 1 3.9408 0.2949 1.1160 35 1 3.9405 -1.3549 0.4419 36 1 5.0721 -2.2713 4.6129 37 1 7.0359 -3.2869 1.7913 38 1 8.8620 -4.9637 1.8935 39 1 9.2641 -6.1655 4.0269 40 1 5.5658 -4.4422 8.0682 41 1 3.7701 -1.2662 4.6316 42 1 3.8283 0.3540 3.8903 43 1 1.5095 -0.1197 4.4819 44 1 1.5777 -1.6973 3.6583 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001576140149.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:26 Heat of formation + Delta-G solvation = -12.154222 kcal Electronic energy + Delta-G solvation = -27239.297672 eV Core-core repulsion = 23385.573172 eV Total energy + Delta-G solvation = -3853.724500 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.59982 -39.13269 -37.70308 -36.19924 -34.66123 -34.32911 -33.19793 -31.01077 -30.34850 -29.30676 -28.85552 -27.56491 -25.44181 -24.41929 -22.98730 -21.57953 -21.38554 -20.86224 -19.34756 -18.22868 -17.44700 -17.16718 -16.55811 -15.97681 -15.41756 -15.35147 -15.12586 -14.74237 -14.60731 -14.49749 -14.21470 -14.01568 -13.69176 -13.33825 -13.19401 -13.06127 -12.86146 -12.27506 -12.19774 -11.94739 -11.84367 -11.60980 -11.27211 -11.24317 -11.05056 -10.88182 -10.68001 -10.63339 -10.25407 -10.06279 -9.86860 -9.26729 -9.05120 -9.00431 -8.46919 -8.00342 -7.65967 -7.03828 -6.40257 -4.48589 2.65062 2.75800 2.95824 3.09209 3.13822 3.26002 3.33894 3.67306 3.95534 4.13341 4.35105 4.57425 4.64671 4.77192 4.81851 4.86160 4.97233 5.02383 5.18774 5.25023 5.43292 5.50302 5.58462 5.65686 5.77759 5.83957 5.93365 5.99364 6.17167 6.40306 6.45957 6.76361 6.78460 6.83688 6.94107 6.97329 7.06715 7.13171 7.20724 7.53332 7.62209 7.93414 8.05542 8.18353 8.40653 8.71854 8.89621 9.04756 10.07099 10.32528 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.019905 B = 0.003089 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.359073 B = 9061.516811 C =10177.051023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.098 3.902 3 H 0.090 0.910 4 N -0.840 5.840 5 C 0.085 3.915 6 H 0.061 0.939 7 C 0.115 3.885 8 N -0.636 5.636 9 C 0.711 3.289 10 O -0.563 6.563 11 N -0.658 5.658 12 C 0.373 3.627 13 C -0.312 4.312 14 C -0.049 4.049 15 C -0.291 4.291 16 C 0.280 3.720 17 C -0.435 4.435 18 H 0.085 0.915 19 C 0.071 3.929 20 N -0.724 5.724 21 Si 0.907 3.093 22 H -0.261 1.261 23 H -0.274 1.274 24 H -0.274 1.274 25 N -0.509 5.509 26 C 0.073 3.927 27 C 0.052 3.948 28 O -0.377 6.377 29 H 0.070 0.930 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.343 0.657 33 H 0.348 0.652 34 H 0.069 0.931 35 H 0.113 0.887 36 H 0.401 0.599 37 H 0.134 0.866 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.269 0.731 41 H 0.091 0.909 42 H 0.078 0.922 43 H 0.108 0.892 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.007 10.607 -7.635 17.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.014 4.014 3 H 0.109 0.891 4 N -0.371 5.371 5 C 0.025 3.975 6 H 0.079 0.921 7 C -0.009 4.009 8 N -0.376 5.376 9 C 0.413 3.587 10 O -0.439 6.439 11 N -0.307 5.307 12 C 0.138 3.862 13 C -0.337 4.337 14 C -0.074 4.074 15 C -0.314 4.314 16 C 0.154 3.846 17 C -0.468 4.468 18 H 0.103 0.897 19 C -0.153 4.153 20 N -0.347 5.347 21 Si 0.731 3.269 22 H -0.184 1.184 23 H -0.199 1.199 24 H -0.200 1.200 25 N -0.228 5.228 26 C -0.051 4.051 27 C -0.025 4.025 28 O -0.296 6.296 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.156 0.844 33 H 0.161 0.839 34 H 0.087 0.913 35 H 0.131 0.869 36 H 0.239 0.761 37 H 0.152 0.848 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.080 0.920 41 H 0.110 0.890 42 H 0.096 0.904 43 H 0.126 0.874 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.759 10.818 -7.232 17.538 hybrid contribution -0.560 -0.708 0.428 0.999 sum -12.318 10.109 -6.803 17.327 Atomic orbital electron populations 1.22544 0.96881 1.02104 1.02634 1.21222 0.92770 0.98602 0.88801 0.89140 1.58703 1.67565 1.06824 1.03984 1.22409 0.93731 0.95796 0.85534 0.92099 1.22010 0.93015 1.00160 0.85668 1.47362 1.44644 1.38484 1.07105 1.15645 0.79311 0.79705 0.84050 1.90825 1.61999 1.57306 1.33806 1.42430 1.37631 1.43265 1.07352 1.18232 0.86760 0.89198 0.92051 1.21675 1.02641 1.09045 1.00348 1.20812 0.95506 0.94827 0.96211 1.21702 1.06534 1.08003 0.95163 1.18174 0.86396 0.87908 0.92161 1.19586 1.14510 1.19248 0.93419 0.89663 1.26033 0.94185 0.94543 1.00513 1.70134 1.11890 1.22981 1.29658 0.86290 0.79332 0.80010 0.81263 1.18422 1.19935 1.19972 1.68014 1.21603 1.11033 1.22155 1.22359 0.94612 1.00088 0.88065 1.22954 0.93765 0.98772 0.87033 1.87859 1.75977 1.52296 1.13422 0.91071 0.92683 0.92798 0.84374 0.83897 0.91307 0.86856 0.76132 0.84812 0.88343 0.88262 0.92016 0.89050 0.90404 0.87437 0.92502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.36 9.34 37.16 0.35 -1.01 16 2 C 0.10 0.84 3.15 -67.71 -0.21 0.63 16 3 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 4 N -0.84 -6.65 8.64 -4.67 -0.04 -6.69 16 5 C 0.08 0.93 2.51 -26.58 -0.07 0.86 16 6 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 7 C 0.11 1.52 5.66 -3.53 -0.02 1.50 16 8 N -0.64 -9.57 3.02 -178.00 -0.54 -10.11 16 9 C 0.71 14.03 8.16 -86.92 -0.71 13.33 16 10 O -0.56 -12.82 12.58 5.30 0.07 -12.76 16 11 N -0.66 -13.90 5.32 -15.79 -0.08 -13.98 16 12 C 0.37 9.50 7.52 -154.99 -1.17 8.34 16 13 C -0.31 -7.89 8.84 -38.89 -0.34 -8.23 16 14 C -0.05 -1.19 10.15 -39.39 -0.40 -1.59 16 15 C -0.29 -7.45 9.83 -38.66 -0.38 -7.83 16 16 C 0.28 7.82 6.55 -85.00 -0.56 7.26 16 17 C -0.44 -11.70 9.14 -37.73 -0.34 -12.05 16 18 H 0.09 2.15 7.85 -52.48 -0.41 1.74 16 19 C 0.07 1.80 5.50 -17.35 -0.10 1.71 16 20 N -0.72 -18.80 11.46 55.55 0.64 -18.17 16 21 Si 0.91 18.49 29.56 -169.99 -5.02 13.47 16 22 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 23 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 24 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 25 N -0.51 -14.09 7.89 -10.26 -0.08 -14.17 16 26 C 0.07 0.85 6.58 -3.53 -0.02 0.83 16 27 C 0.05 0.53 6.98 37.31 0.26 0.79 16 28 O -0.38 -4.15 9.72 -35.23 -0.34 -4.49 16 29 H 0.07 0.59 7.69 -51.93 -0.40 0.19 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.34 2.61 9.00 -39.29 -0.35 2.26 16 33 H 0.35 2.05 9.07 -39.29 -0.36 1.70 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.11 1.72 6.80 -51.93 -0.35 1.37 16 36 H 0.40 7.61 6.38 -40.82 -0.26 7.35 16 37 H 0.13 3.37 5.28 -52.56 -0.28 3.10 16 38 H 0.10 2.07 8.06 -52.49 -0.42 1.65 16 39 H 0.10 2.33 8.06 -52.48 -0.42 1.90 16 40 H 0.27 6.27 8.29 -40.82 -0.34 5.94 16 41 H 0.09 1.07 5.77 -51.93 -0.30 0.77 16 42 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 356.77 15.07 5.38 5.38 Total: -1.00 -32.28 356.77 -9.81 -42.10 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: -6.07 Total: 14.89 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: -3.71 Total: 4.53 kcal Atomic # 7 Polarization: -63.01 SS G_CDS: -0.11 Total: -63.12 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: -0.28 Total: -17.25 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.02 Total: 13.47 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.28 -9.81 -42.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576140149.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.942 kcal (2) G-P(sol) polarization free energy of solvation -32.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds