Wall clock time and date at job start Tue Mar 31 2020 12:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46890 * 2 1 4 4 N 1.46898 * 109.47228 * 239.99991 * 2 1 3 5 5 C 1.52999 * 109.47000 * 119.99927 * 2 1 3 6 6 H 1.09008 * 109.55161 * 59.87789 * 5 2 1 7 7 C 1.53296 * 109.51136 * 179.97438 * 5 2 1 8 8 N 1.47152 * 108.38406 * 172.22628 * 7 5 2 9 9 C 1.34776 * 120.98124 * 129.19352 * 8 7 5 10 10 O 1.21577 * 119.99886 * 354.81130 * 9 8 7 11 11 N 1.34771 * 120.00222 * 174.80835 * 9 8 7 12 12 C 1.39245 * 120.00252 * 185.69044 * 11 9 8 13 13 C 1.39686 * 119.57391 * 18.12582 * 12 11 9 14 14 C 1.38649 * 119.49466 * 180.02562 * 13 12 11 15 15 C 1.38353 * 118.66761 * 0.02562 * 14 13 12 16 16 C 1.40568 * 119.13687 * 359.97438 * 15 14 13 17 17 C 1.41337 * 119.79087 * 179.97438 * 16 15 14 18 18 H 1.08006 * 119.99458 * 0.02562 * 17 16 15 19 19 C 1.40024 * 120.00161 * 180.02562 * 17 16 15 20 20 N 1.30744 * 119.99958 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99965 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46836 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.47085 * 120.00055 * 21 19 17 24 24 H 1.48496 * 109.46753 * 240.00119 * 21 19 17 25 25 N 1.31907 * 119.57411 * 197.85993 * 12 11 9 26 26 C 1.47152 * 118.03730 * 309.46937 * 8 7 5 27 27 C 1.53301 * 108.38510 * 50.53317 * 26 8 7 28 28 O 1.42956 * 109.51476 * 299.74997 * 5 2 1 29 29 H 1.08997 * 109.47295 * 299.99861 * 1 2 3 30 30 H 1.08995 * 109.47270 * 59.99978 * 1 2 3 31 31 H 1.09000 * 109.46890 * 179.97438 * 1 2 3 32 32 H 1.00895 * 111.00014 * 300.00515 * 4 2 1 33 33 H 1.00906 * 110.99902 * 63.95177 * 4 2 1 34 34 H 1.08998 * 109.67879 * 52.50761 * 7 5 2 35 35 H 1.09002 * 109.71417 * 291.97009 * 7 5 2 36 36 H 0.97003 * 119.99700 * 5.69739 * 11 9 8 37 37 H 1.07994 * 120.25361 * 0.02562 * 13 12 11 38 38 H 1.07996 * 120.66299 * 180.02562 * 14 13 12 39 39 H 1.08007 * 120.42974 * 179.97438 * 15 14 13 40 40 H 0.97000 * 120.00042 * 179.97438 * 20 19 17 41 41 H 1.09001 * 109.68085 * 170.25662 * 26 8 7 42 42 H 1.08999 * 109.68017 * 290.81280 * 26 8 7 43 43 H 1.08996 * 109.50904 * 187.77527 * 27 26 8 44 44 H 1.09001 * 109.50655 * 67.62281 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0400 -0.7212 1.2493 6 1 1.6756 -1.7486 1.2517 7 6 3.5730 -0.7223 1.2499 8 7 4.0361 -1.2507 2.5428 9 6 4.9471 -2.2422 2.6009 10 8 5.3285 -2.7780 1.5783 11 7 5.4354 -2.6399 3.7924 12 6 6.4612 -3.5799 3.8459 13 6 7.2329 -3.8238 2.7073 14 6 8.2536 -4.7606 2.7623 15 6 8.4769 -5.4298 3.9524 16 6 7.6660 -5.1397 5.0633 17 6 7.8817 -5.8156 6.2858 18 1 8.6679 -6.5519 6.3642 19 6 7.0761 -5.5305 7.3950 20 7 6.1241 -4.6394 7.2999 21 14 7.3617 -6.4232 9.0109 22 1 8.4907 -7.3757 8.8573 23 1 7.6872 -5.4358 10.0711 24 1 6.1340 -7.1683 9.3884 25 7 6.6953 -4.2248 4.9725 26 6 3.4707 -0.6687 3.7704 27 6 1.9427 -0.6703 3.6469 28 8 1.5688 -0.0447 2.4171 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6962 -1.6479 -1.2228 33 1 1.7502 -0.1989 -2.0373 34 1 3.9408 0.2949 1.1160 35 1 3.9405 -1.3549 0.4419 36 1 5.0721 -2.2713 4.6129 37 1 7.0359 -3.2869 1.7913 38 1 8.8620 -4.9637 1.8935 39 1 9.2641 -6.1655 4.0269 40 1 5.5658 -4.4422 8.0682 41 1 3.7701 -1.2662 4.6316 42 1 3.8283 0.3540 3.8903 43 1 1.5095 -0.1197 4.4819 44 1 1.5777 -1.6973 3.6583 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001576140149.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:25 Heat of formation + Delta-G solvation = -34.954714 kcal Electronic energy + Delta-G solvation = -27240.286375 eV Core-core repulsion = 23385.573172 eV Total energy + Delta-G solvation = -3854.713203 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.99698 -40.45901 -39.40096 -37.00861 -36.09846 -35.89031 -35.02820 -32.36476 -31.91973 -31.08229 -29.52967 -28.77907 -27.34440 -25.42517 -24.25773 -23.51214 -22.88433 -21.72603 -20.89528 -19.64362 -19.26756 -18.18305 -18.00509 -17.21307 -16.88346 -16.59018 -16.30940 -16.22296 -16.08629 -15.79012 -15.56859 -15.15641 -14.88210 -14.66393 -14.58648 -14.13109 -13.99183 -13.84133 -13.74745 -13.21575 -12.91904 -12.83558 -12.67111 -12.63015 -12.55172 -12.44501 -12.03533 -11.81431 -11.67854 -11.62085 -11.26284 -11.06687 -10.76870 -9.99651 -9.76414 -9.64683 -9.58014 -8.93614 -8.30475 -6.50342 0.79930 1.11495 1.34466 1.43496 1.54280 1.58312 2.03004 2.24961 2.51694 2.70478 2.88615 3.54094 3.79619 3.82238 3.90022 3.93246 3.97574 4.06649 4.18178 4.31602 4.42801 4.44911 4.52287 4.64600 4.70237 4.73803 4.85530 4.87329 4.88821 4.92579 5.00159 5.07127 5.23776 5.26364 5.34138 5.55856 5.67238 5.75792 5.97533 6.03987 6.16349 6.20468 6.27528 6.58369 6.68184 6.80837 6.97343 7.39310 8.09357 8.45650 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.019905 B = 0.003089 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.359073 B = 9061.516811 C =10177.051023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.104 3.896 3 H 0.094 0.906 4 N -0.848 5.848 5 C 0.092 3.908 6 H 0.049 0.951 7 C 0.114 3.886 8 N -0.627 5.627 9 C 0.708 3.292 10 O -0.598 6.598 11 N -0.655 5.655 12 C 0.364 3.636 13 C -0.329 4.329 14 C -0.047 4.047 15 C -0.309 4.309 16 C 0.246 3.754 17 C -0.464 4.464 18 H 0.092 0.908 19 C 0.026 3.974 20 N -0.753 5.753 21 Si 0.989 3.011 22 H -0.256 1.256 23 H -0.265 1.265 24 H -0.268 1.268 25 N -0.533 5.533 26 C 0.067 3.933 27 C 0.055 3.945 28 O -0.376 6.376 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.051 0.949 32 H 0.345 0.655 33 H 0.360 0.640 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.410 0.590 37 H 0.134 0.866 38 H 0.130 0.870 39 H 0.114 0.886 40 H 0.279 0.721 41 H 0.089 0.911 42 H 0.097 0.903 43 H 0.141 0.859 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.058 11.385 -6.851 18.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.008 4.008 3 H 0.112 0.888 4 N -0.381 5.381 5 C 0.032 3.968 6 H 0.067 0.933 7 C -0.009 4.009 8 N -0.365 5.365 9 C 0.409 3.591 10 O -0.477 6.477 11 N -0.304 5.304 12 C 0.128 3.872 13 C -0.353 4.353 14 C -0.071 4.071 15 C -0.332 4.332 16 C 0.119 3.881 17 C -0.496 4.496 18 H 0.110 0.890 19 C -0.196 4.196 20 N -0.375 5.375 21 Si 0.809 3.191 22 H -0.179 1.179 23 H -0.190 1.190 24 H -0.193 1.193 25 N -0.253 5.253 26 C -0.056 4.056 27 C -0.023 4.023 28 O -0.294 6.294 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.158 0.842 33 H 0.175 0.825 34 H 0.098 0.902 35 H 0.110 0.890 36 H 0.249 0.751 37 H 0.151 0.849 38 H 0.148 0.852 39 H 0.132 0.868 40 H 0.090 0.910 41 H 0.107 0.893 42 H 0.115 0.885 43 H 0.158 0.842 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -12.856 11.655 -6.471 18.520 hybrid contribution -0.280 -0.875 0.130 0.928 sum -13.136 10.781 -6.341 18.138 Atomic orbital electron populations 1.22468 0.95705 1.02116 1.03124 1.21157 0.93546 0.98253 0.87816 0.88839 1.58690 1.67861 1.07114 1.04421 1.22368 0.91828 0.95757 0.86834 0.93298 1.22143 0.94728 0.99876 0.84108 1.47430 1.43076 1.36848 1.09177 1.15805 0.79871 0.80384 0.83016 1.90781 1.63482 1.58800 1.34656 1.42328 1.37027 1.42682 1.08386 1.18546 0.87487 0.89435 0.91728 1.21854 1.03314 1.09790 1.00384 1.21164 0.95247 0.93812 0.96917 1.21888 1.07097 1.08962 0.95221 1.18706 0.87241 0.88651 0.93483 1.19966 1.15519 1.19878 0.94192 0.89008 1.26962 0.93467 0.95199 1.03973 1.70200 1.12299 1.23687 1.31315 0.85055 0.79369 0.78654 0.75975 1.17940 1.18996 1.19257 1.68045 1.22312 1.11898 1.23083 1.22656 0.95850 1.00699 0.86379 1.23075 0.92340 0.99085 0.87753 1.87878 1.75731 1.52252 1.13543 0.91660 0.91071 0.93023 0.84240 0.82500 0.90202 0.88973 0.75148 0.84897 0.85175 0.86757 0.91018 0.89252 0.88456 0.84157 0.93254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 9.34 71.98 0.67 -1.60 16 2 C 0.10 1.64 3.15 44.92 0.14 1.78 16 3 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 4 N -0.85 -12.57 8.64 -168.68 -1.46 -14.02 16 5 C 0.09 1.91 2.51 30.69 0.08 1.99 16 6 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 7 C 0.11 2.97 5.66 86.35 0.49 3.45 16 8 N -0.63 -18.70 3.02 -835.35 -2.52 -21.23 16 9 C 0.71 28.42 8.16 179.06 1.46 29.88 16 10 O -0.60 -28.01 12.58 -3.96 -0.05 -28.05 16 11 N -0.65 -28.24 5.32 -322.13 -1.71 -29.96 16 12 C 0.36 19.06 7.52 133.26 1.00 20.06 16 13 C -0.33 -16.95 8.84 22.72 0.20 -16.75 16 14 C -0.05 -2.30 10.15 22.40 0.23 -2.07 16 15 C -0.31 -16.05 9.83 22.87 0.22 -15.82 16 16 C 0.25 14.02 6.55 40.19 0.26 14.28 16 17 C -0.46 -25.25 9.14 23.47 0.21 -25.03 16 18 H 0.09 4.67 7.85 -2.91 -0.02 4.65 16 19 C 0.03 1.30 5.50 85.29 0.47 1.76 16 20 N -0.75 -39.26 11.46 21.84 0.25 -39.01 16 21 Si 0.99 37.46 29.56 68.60 2.03 39.48 16 22 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 23 H -0.27 -9.60 7.11 99.48 0.71 -8.89 16 24 H -0.27 -9.78 7.11 99.48 0.71 -9.07 16 25 N -0.53 -30.29 7.89 -186.36 -1.47 -31.76 16 26 C 0.07 1.47 6.58 86.36 0.57 2.04 16 27 C 0.05 1.00 6.98 72.08 0.50 1.50 16 28 O -0.38 -7.51 9.72 -148.98 -1.45 -8.96 16 29 H 0.06 0.94 7.69 -2.39 -0.02 0.93 16 30 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.34 5.02 9.00 -89.70 -0.81 4.22 16 33 H 0.36 3.73 9.07 -89.69 -0.81 2.92 16 34 H 0.08 1.91 8.14 -2.39 -0.02 1.90 16 35 H 0.09 2.85 6.80 -2.39 -0.02 2.83 16 36 H 0.41 15.81 6.38 -92.71 -0.59 15.22 16 37 H 0.13 6.87 5.28 -4.03 -0.02 6.85 16 38 H 0.13 5.37 8.06 -2.91 -0.02 5.34 16 39 H 0.11 5.40 8.06 -2.91 -0.02 5.37 16 40 H 0.28 12.94 8.29 -92.71 -0.77 12.18 16 41 H 0.09 2.03 5.77 -2.39 -0.01 2.01 16 42 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.14 1.67 8.14 -2.39 -0.02 1.66 16 44 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -70.92 356.77 -1.03 -71.95 By element: Atomic # 1 Polarization: 47.25 SS G_CDS: -1.15 Total: 46.10 kcal Atomic # 6 Polarization: 8.95 SS G_CDS: 6.51 Total: 15.47 kcal Atomic # 7 Polarization: -129.06 SS G_CDS: -6.91 Total: -135.98 kcal Atomic # 8 Polarization: -35.52 SS G_CDS: -1.50 Total: -37.02 kcal Atomic # 14 Polarization: 37.46 SS G_CDS: 2.03 Total: 39.48 kcal Total: -70.92 -1.03 -71.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576140149.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.995 kcal (2) G-P(sol) polarization free energy of solvation -70.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds