Wall clock time and date at job start Tue Mar 31 2020 12:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47176 * 2 1 4 4 N 1.46900 * 109.46975 * 239.99579 * 2 1 3 5 5 C 1.52999 * 109.46794 * 119.99691 * 2 1 3 6 6 H 1.09000 * 109.55474 * 299.87542 * 5 2 1 7 7 C 1.53298 * 109.51245 * 179.74412 * 5 2 1 8 8 N 1.47153 * 108.38509 * 187.77299 * 7 5 2 9 9 C 1.34777 * 120.98340 * 230.51807 * 8 7 5 10 10 O 1.21568 * 119.99878 * 355.04156 * 9 8 7 11 11 N 1.34772 * 119.99865 * 175.04444 * 9 8 7 12 12 C 1.39247 * 119.99923 * 185.80814 * 11 9 8 13 13 C 1.39687 * 119.57633 * 18.17161 * 12 11 9 14 14 C 1.38641 * 119.49941 * 179.97438 * 13 12 11 15 15 C 1.38352 * 118.66854 * 0.02562 * 14 13 12 16 16 C 1.40575 * 119.13162 * 0.02562 * 15 14 13 17 17 C 1.41340 * 119.78464 * 179.97438 * 16 15 14 18 18 H 1.07997 * 119.99934 * 359.97438 * 17 16 15 19 19 C 1.40022 * 119.99527 * 179.97438 * 17 16 15 20 20 N 1.30742 * 120.00566 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99662 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47089 * 90.00404 * 21 19 17 23 23 H 1.48503 * 109.47188 * 209.99907 * 21 19 17 24 24 H 1.48494 * 109.47151 * 330.00045 * 21 19 17 25 25 N 1.31907 * 119.57703 * 197.90285 * 12 11 9 26 26 C 1.47158 * 118.03517 * 50.53718 * 8 7 5 27 27 C 1.53300 * 108.38196 * 309.46319 * 26 8 7 28 28 O 1.42957 * 109.22110 * 52.30557 * 27 26 8 29 29 H 1.08994 * 109.47421 * 300.00626 * 1 2 3 30 30 H 1.09005 * 109.46544 * 60.00679 * 1 2 3 31 31 H 1.08999 * 109.47176 * 180.02562 * 1 2 3 32 32 H 1.00899 * 111.00370 * 300.00044 * 4 2 1 33 33 H 1.00891 * 111.00471 * 63.96042 * 4 2 1 34 34 H 1.08997 * 109.67965 * 68.05419 * 7 5 2 35 35 H 1.08997 * 109.68278 * 307.49974 * 7 5 2 36 36 H 0.96997 * 120.00562 * 5.81359 * 11 9 8 37 37 H 1.07998 * 120.24677 * 0.02827 * 13 12 11 38 38 H 1.07993 * 120.66549 * 179.97438 * 14 13 12 39 39 H 1.08001 * 120.43519 * 179.97438 * 15 14 13 40 40 H 0.96998 * 120.00549 * 179.97438 * 20 19 17 41 41 H 1.08998 * 109.68105 * 189.74505 * 26 8 7 42 42 H 1.09000 * 109.67905 * 69.18822 * 26 8 7 43 43 H 1.08998 * 109.51406 * 292.37639 * 27 26 8 44 44 H 1.09001 * 109.54962 * 172.24861 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6926 -1.1994 5 6 2.0399 -0.7212 1.2493 6 1 1.6792 -0.2071 2.1401 7 6 3.5729 -0.7274 1.2471 8 7 4.0352 -1.5829 2.3516 9 6 4.9542 -1.1417 3.2331 10 8 5.4803 -0.0577 3.0713 11 7 5.2900 -1.9022 4.2938 12 6 6.1473 -1.3980 5.2685 13 6 6.3524 -0.0193 5.3599 14 6 7.2059 0.4810 6.3313 15 6 7.8328 -0.4083 7.1858 16 6 7.5861 -1.7848 7.0424 17 6 8.2196 -2.7056 7.9075 18 1 8.8910 -2.3509 8.6754 19 6 7.9766 -4.0775 7.7689 20 7 7.1633 -4.5069 6.8396 21 14 8.8145 -5.2946 8.9119 22 1 7.9630 -5.5173 10.1079 23 1 9.0163 -6.5828 8.2013 24 1 10.1301 -4.7513 9.3350 25 7 6.7511 -2.2280 6.0970 26 6 3.4646 -2.9346 2.4648 27 6 1.9369 -2.8209 2.4077 28 8 1.5639 -2.0693 1.2503 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 1.6962 -1.6480 -1.2227 33 1 1.7504 -0.1992 -2.0372 34 1 3.9443 0.2875 1.3888 35 1 3.9371 -1.1231 0.2990 36 1 4.9347 -2.8007 4.3784 37 1 5.8493 0.6519 4.6796 38 1 7.3785 1.5434 6.4186 39 1 8.5036 -0.0498 7.9526 40 1 6.9953 -5.4573 6.7433 41 1 3.7642 -3.3813 3.4129 42 1 3.8179 -3.5525 1.6393 43 1 1.5758 -2.3144 3.3028 44 1 1.4988 -3.8174 2.3514 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001576140164.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:30 Heat of formation + Delta-G solvation = -12.380735 kcal Electronic energy + Delta-G solvation = -27268.999588 eV Core-core repulsion = 23415.265266 eV Total energy + Delta-G solvation = -3853.734322 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.60446 -39.15342 -37.71745 -36.05227 -34.60301 -34.33657 -33.20304 -30.97123 -30.34972 -29.27792 -28.97020 -27.60769 -25.44607 -24.38433 -23.11106 -21.58631 -21.41479 -20.57119 -19.36486 -18.24163 -17.45250 -17.03170 -16.40109 -16.20361 -15.59609 -15.46478 -15.08995 -14.65682 -14.59328 -14.40747 -14.14404 -13.96184 -13.63282 -13.41879 -13.18400 -13.05904 -12.86881 -12.25583 -12.18995 -11.93242 -11.83430 -11.60965 -11.25413 -11.19915 -11.07314 -10.92388 -10.69828 -10.63374 -10.19077 -10.09000 -9.85947 -9.28889 -9.05626 -8.99717 -8.40604 -8.00620 -7.66181 -7.04244 -6.40150 -4.48891 2.64579 2.77705 2.96627 3.08934 3.12466 3.26132 3.48435 3.66865 3.95566 4.13327 4.25822 4.48055 4.66598 4.79948 4.83357 4.94750 5.00249 5.07030 5.13171 5.26075 5.42192 5.48480 5.56279 5.67401 5.69825 5.91438 5.94024 6.05555 6.15711 6.40439 6.45960 6.76034 6.82043 6.83156 6.96116 6.98050 7.06765 7.20678 7.22877 7.52923 7.61665 7.92487 8.04999 8.17926 8.40155 8.71608 8.89183 9.04408 10.06958 10.32574 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.022065 B = 0.002994 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.701559 B = 9350.841058 C =10285.102760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.099 3.901 3 H 0.094 0.906 4 N -0.839 5.839 5 C 0.084 3.916 6 H 0.064 0.936 7 C 0.111 3.889 8 N -0.635 5.635 9 C 0.711 3.289 10 O -0.566 6.566 11 N -0.658 5.658 12 C 0.373 3.627 13 C -0.313 4.313 14 C -0.049 4.049 15 C -0.291 4.291 16 C 0.280 3.720 17 C -0.436 4.436 18 H 0.085 0.915 19 C 0.071 3.929 20 N -0.724 5.724 21 Si 0.907 3.093 22 H -0.270 1.270 23 H -0.277 1.277 24 H -0.262 1.262 25 N -0.509 5.509 26 C 0.075 3.925 27 C 0.052 3.948 28 O -0.376 6.376 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.348 0.652 33 H 0.340 0.660 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.401 0.599 37 H 0.133 0.867 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.270 0.730 41 H 0.090 0.910 42 H 0.078 0.922 43 H 0.056 0.944 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.800 1.338 -12.051 18.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.014 4.014 3 H 0.112 0.888 4 N -0.369 5.369 5 C 0.025 3.975 6 H 0.082 0.918 7 C -0.012 4.012 8 N -0.374 5.374 9 C 0.413 3.587 10 O -0.442 6.442 11 N -0.307 5.307 12 C 0.138 3.862 13 C -0.338 4.338 14 C -0.074 4.074 15 C -0.314 4.314 16 C 0.154 3.846 17 C -0.468 4.468 18 H 0.103 0.897 19 C -0.153 4.153 20 N -0.346 5.346 21 Si 0.731 3.269 22 H -0.195 1.195 23 H -0.202 1.202 24 H -0.186 1.186 25 N -0.228 5.228 26 C -0.049 4.049 27 C -0.026 4.026 28 O -0.294 6.294 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.162 0.838 33 H 0.152 0.848 34 H 0.115 0.885 35 H 0.106 0.894 36 H 0.239 0.761 37 H 0.151 0.849 38 H 0.116 0.884 39 H 0.117 0.883 40 H 0.081 0.919 41 H 0.108 0.892 42 H 0.096 0.904 43 H 0.074 0.926 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -13.033 1.102 -12.179 17.872 hybrid contribution -0.539 -0.321 0.653 0.906 sum -13.573 0.781 -11.526 17.824 Atomic orbital electron populations 1.22550 0.96974 1.02748 1.01989 1.21407 0.92803 0.97695 0.89470 0.88784 1.58835 1.67092 1.07163 1.03806 1.22592 0.93732 0.83514 0.97660 0.91804 1.22054 0.92997 0.96845 0.89343 1.47335 1.43978 1.15594 1.30541 1.15647 0.79778 0.83986 0.79303 1.90818 1.55834 1.21929 1.75634 1.42431 1.48453 1.18171 1.21648 1.18232 0.90154 0.89003 0.88817 1.21654 1.11008 0.94521 1.06605 1.20804 0.95082 0.97547 0.93920 1.21700 1.09499 0.94801 1.05426 1.18167 0.87988 0.89672 0.88786 1.19551 1.23153 0.90443 1.13617 0.89699 1.26031 0.94431 0.99506 0.95310 1.70118 1.24423 1.15045 1.25033 0.86342 0.80548 0.79493 0.80484 1.19493 1.20248 1.18579 1.68012 1.12450 1.34728 1.07608 1.22338 0.94507 0.84660 1.03415 1.22936 0.93773 0.97093 0.88758 1.87853 1.75654 1.23579 1.42362 0.92191 0.92726 0.91692 0.83810 0.84780 0.88461 0.89390 0.76109 0.84911 0.88369 0.88263 0.91926 0.89203 0.90354 0.92606 0.87616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.31 9.34 37.16 0.35 -0.96 16 2 C 0.10 0.81 3.24 -67.71 -0.22 0.59 16 3 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 4 N -0.84 -6.49 8.34 -4.67 -0.04 -6.53 16 5 C 0.08 0.88 2.59 -26.58 -0.07 0.81 16 6 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 7 C 0.11 1.44 5.85 -3.53 -0.02 1.42 16 8 N -0.63 -9.48 3.02 -178.00 -0.54 -10.02 16 9 C 0.71 14.01 8.16 -86.92 -0.71 13.30 16 10 O -0.57 -12.88 12.61 5.31 0.07 -12.81 16 11 N -0.66 -13.88 5.33 -15.79 -0.08 -13.96 16 12 C 0.37 9.50 7.52 -154.99 -1.16 8.34 16 13 C -0.31 -7.88 8.84 -38.89 -0.34 -8.23 16 14 C -0.05 -1.18 10.15 -39.39 -0.40 -1.58 16 15 C -0.29 -7.45 9.83 -38.66 -0.38 -7.83 16 16 C 0.28 7.83 6.55 -85.00 -0.56 7.27 16 17 C -0.44 -11.71 9.14 -37.73 -0.34 -12.06 16 18 H 0.08 2.14 7.85 -52.49 -0.41 1.72 16 19 C 0.07 1.81 5.50 -17.35 -0.10 1.71 16 20 N -0.72 -18.84 11.46 55.55 0.64 -18.21 16 21 Si 0.91 18.52 29.56 -169.99 -5.02 13.50 16 22 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 23 H -0.28 -5.55 7.11 56.52 0.40 -5.14 16 24 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 25 N -0.51 -14.10 7.89 -10.26 -0.08 -14.18 16 26 C 0.07 0.87 6.63 -3.53 -0.02 0.85 16 27 C 0.05 0.50 6.98 37.31 0.26 0.76 16 28 O -0.38 -3.88 9.13 -35.23 -0.32 -4.20 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.51 7.68 -51.93 -0.40 0.11 16 32 H 0.35 2.74 8.45 -39.29 -0.33 2.41 16 33 H 0.34 2.01 9.07 -39.30 -0.36 1.66 16 34 H 0.10 1.41 7.12 -51.93 -0.37 1.04 16 35 H 0.09 1.16 7.40 -51.93 -0.38 0.77 16 36 H 0.40 7.61 6.34 -40.82 -0.26 7.35 16 37 H 0.13 3.33 5.29 -52.55 -0.28 3.05 16 38 H 0.10 2.06 8.06 -52.49 -0.42 1.63 16 39 H 0.10 2.32 8.06 -52.49 -0.42 1.90 16 40 H 0.27 6.33 8.29 -40.82 -0.34 5.99 16 41 H 0.09 1.05 5.67 -51.93 -0.29 0.76 16 42 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.11 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 355.21 15.07 5.35 5.35 Total: -1.00 -32.10 355.21 -9.77 -41.88 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: -6.02 Total: 14.79 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: -3.72 Total: 4.40 kcal Atomic # 7 Polarization: -62.79 SS G_CDS: -0.11 Total: -62.90 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: -0.25 Total: -17.01 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.02 Total: 13.50 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.10 -9.77 -41.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576140164.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.497 kcal (2) G-P(sol) polarization free energy of solvation -32.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds