Wall clock time and date at job start Tue Mar 31 2020 12:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09008 * 109.46823 * 2 1 4 4 N 1.46898 * 109.47270 * 119.99442 * 2 1 3 5 5 C 1.53001 * 109.47141 * 240.00104 * 2 1 3 6 6 H 1.08995 * 109.51195 * 300.09747 * 5 2 1 7 7 C 1.53299 * 109.51244 * 179.97438 * 5 2 1 8 8 N 1.47148 * 108.38435 * 187.77488 * 7 5 2 9 9 C 1.34779 * 120.97797 * 230.51269 * 8 7 5 10 10 O 1.21570 * 120.00341 * 6.77747 * 9 8 7 11 11 N 1.34783 * 119.99891 * 186.50032 * 9 8 7 12 12 C 1.39238 * 119.99927 * 173.71556 * 11 9 8 13 13 C 1.39686 * 119.57898 * 21.94021 * 12 11 9 14 14 C 1.38646 * 119.49772 * 179.97438 * 13 12 11 15 15 C 1.38355 * 118.67035 * 0.02562 * 14 13 12 16 16 C 1.40570 * 119.13039 * 359.97438 * 15 14 13 17 17 C 1.41340 * 119.78672 * 180.02562 * 16 15 14 18 18 H 1.07999 * 119.99575 * 354.56956 * 17 16 15 19 19 C 1.40024 * 119.99900 * 174.57782 * 17 16 15 20 20 N 1.30744 * 120.00208 * 5.46188 * 19 17 16 21 21 Si 1.86804 * 119.99740 * 185.46957 * 19 17 16 22 22 H 1.48506 * 109.47092 * 94.99257 * 21 19 17 23 23 H 1.48498 * 109.46967 * 214.98833 * 21 19 17 24 24 H 1.48502 * 109.47092 * 334.98999 * 21 19 17 25 25 N 1.31908 * 119.57252 * 201.67019 * 12 11 9 26 26 C 1.47151 * 118.04050 * 50.78232 * 8 7 5 27 27 C 1.53718 * 108.15923 * 309.15988 * 26 8 7 28 28 O 1.42956 * 109.51537 * 60.25093 * 5 2 1 29 29 H 1.08997 * 109.47069 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46975 * 300.00155 * 1 2 3 31 31 H 1.09005 * 109.47207 * 60.00416 * 1 2 3 32 32 H 1.00900 * 110.99295 * 60.00488 * 4 2 1 33 33 H 1.00896 * 110.99797 * 183.95394 * 4 2 1 34 34 H 1.09000 * 109.68134 * 68.04381 * 7 5 2 35 35 H 1.09004 * 109.70792 * 307.51272 * 7 5 2 36 36 H 0.97000 * 119.99916 * 353.71249 * 11 9 8 37 37 H 1.08002 * 120.24948 * 0.02562 * 13 12 11 38 38 H 1.07999 * 120.66461 * 179.97438 * 14 13 12 39 39 H 1.07995 * 120.43410 * 179.97438 * 15 14 13 40 40 H 0.97004 * 119.99715 * 180.02562 * 20 19 17 41 41 H 1.08999 * 109.67825 * 68.93359 * 26 8 7 42 42 H 1.08994 * 109.68574 * 189.49629 * 26 8 7 43 43 H 1.08999 * 109.65774 * 292.57044 * 27 26 8 44 44 H 1.08999 * 109.48289 * 172.39143 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.0400 -0.7212 -1.2493 6 1 1.6756 -1.7485 -1.2508 7 6 3.5730 -0.7212 -1.2505 8 7 4.0360 -1.2496 -2.5435 9 6 4.9521 -2.2365 -2.6017 10 8 5.3172 -2.7879 -1.5816 11 7 5.4593 -2.6158 -3.7914 12 6 6.4982 -3.5415 -3.8420 13 6 6.7063 -4.4041 -2.7632 14 6 7.7410 -5.3255 -2.8156 15 6 8.5414 -5.3614 -3.9435 16 6 8.2810 -4.4668 -4.9961 17 6 9.0897 -4.4917 -6.1550 18 1 9.9569 -5.1342 -6.1946 19 6 8.7666 -3.6832 -7.2517 20 7 7.7816 -2.8278 -7.1656 21 14 9.7429 -3.8271 -8.8378 22 1 9.0456 -4.7533 -9.7659 23 1 9.8602 -2.4885 -9.4699 24 1 11.0987 -4.3539 -8.5385 25 7 7.2700 -3.5961 -4.9103 26 6 3.4739 -0.6645 -3.7711 27 6 1.9418 -0.6711 -3.6469 28 8 1.5688 -0.0446 -2.4171 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 1.6962 -1.6478 1.2227 33 1 3.0262 -0.6499 1.2559 34 1 3.9408 -1.3536 -0.4425 35 1 3.9407 0.2962 -1.1168 36 1 5.1005 -2.2440 -4.6123 37 1 6.0655 -4.3543 -1.8953 38 1 7.9190 -6.0012 -1.9921 39 1 9.3556 -6.0673 -4.0143 40 1 7.5576 -2.2680 -7.9255 41 1 3.8312 0.3587 -3.8871 42 1 3.7760 -1.2594 -4.6330 43 1 1.5774 -1.6983 -3.6579 44 1 1.5070 -0.1215 -4.4818 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001576140168.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:33 Heat of formation + Delta-G solvation = -12.432562 kcal Electronic energy + Delta-G solvation = -27256.943190 eV Core-core repulsion = 23403.206621 eV Total energy + Delta-G solvation = -3853.736569 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.73803 -39.23791 -37.77784 -36.20226 -34.79670 -34.41394 -33.25457 -30.88975 -30.39682 -29.45407 -29.09103 -27.57759 -25.47827 -24.50291 -23.02105 -21.62455 -21.45657 -20.91275 -19.51429 -18.36995 -17.51994 -16.96045 -16.62857 -16.06865 -15.96246 -15.40227 -15.28214 -14.98833 -14.60882 -14.57279 -14.27630 -14.08963 -13.75134 -13.49393 -13.38322 -12.91681 -12.35758 -12.25548 -12.14011 -11.99536 -11.91244 -11.78985 -11.29926 -11.27826 -11.18102 -11.00285 -10.86171 -10.69248 -10.30301 -10.13310 -9.89067 -9.28382 -9.15612 -9.09925 -8.61586 -8.06046 -7.71385 -7.12994 -6.45349 -4.53164 2.53257 2.66745 2.91211 3.06311 3.09988 3.21727 3.37761 3.53357 3.92240 4.02061 4.25263 4.37732 4.59902 4.71854 4.73795 4.77423 4.86828 4.99957 5.17112 5.22727 5.32089 5.42392 5.51040 5.62783 5.67020 5.83554 5.85826 5.99510 6.11533 6.24808 6.38541 6.67229 6.69530 6.78127 6.90581 6.91142 6.96274 7.09013 7.14637 7.46264 7.55615 7.86786 7.99320 8.11986 8.33561 8.66525 8.80590 8.96468 10.01082 10.27916 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.021792 B = 0.003026 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.583413 B = 9252.253092 C =10339.408782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.098 3.902 3 H 0.091 0.909 4 N -0.835 5.835 5 C 0.044 3.956 6 H 0.062 0.938 7 C 0.100 3.900 8 N -0.634 5.634 9 C 0.713 3.287 10 O -0.566 6.566 11 N -0.656 5.656 12 C 0.369 3.631 13 C -0.314 4.314 14 C -0.050 4.050 15 C -0.289 4.289 16 C 0.279 3.721 17 C -0.436 4.436 18 H 0.086 0.914 19 C 0.071 3.929 20 N -0.724 5.724 21 Si 0.907 3.093 22 H -0.270 1.270 23 H -0.277 1.277 24 H -0.261 1.261 25 N -0.508 5.508 26 C 0.074 3.926 27 C 0.050 3.950 28 O -0.371 6.371 29 H 0.051 0.949 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.343 0.657 33 H 0.346 0.654 34 H 0.100 0.900 35 H 0.073 0.927 36 H 0.402 0.598 37 H 0.139 0.861 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.270 0.730 41 H 0.079 0.921 42 H 0.092 0.908 43 H 0.056 0.944 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.220 6.937 6.155 16.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.014 4.014 3 H 0.109 0.891 4 N -0.366 5.366 5 C -0.017 4.017 6 H 0.080 0.920 7 C -0.023 4.023 8 N -0.374 5.374 9 C 0.414 3.586 10 O -0.443 6.443 11 N -0.305 5.305 12 C 0.134 3.866 13 C -0.339 4.339 14 C -0.075 4.075 15 C -0.312 4.312 16 C 0.153 3.847 17 C -0.468 4.468 18 H 0.104 0.896 19 C -0.153 4.153 20 N -0.346 5.346 21 Si 0.732 3.268 22 H -0.195 1.195 23 H -0.202 1.202 24 H -0.185 1.185 25 N -0.227 5.227 26 C -0.050 4.050 27 C -0.028 4.028 28 O -0.288 6.288 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.156 0.844 33 H 0.159 0.841 34 H 0.118 0.882 35 H 0.091 0.909 36 H 0.239 0.761 37 H 0.156 0.844 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.081 0.919 41 H 0.098 0.902 42 H 0.110 0.890 43 H 0.075 0.925 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -13.724 8.002 6.493 17.162 hybrid contribution 1.168 -1.263 -1.429 2.236 sum -12.556 6.739 5.065 15.123 Atomic orbital electron populations 1.21725 0.93504 1.02014 1.02418 1.21392 0.96541 0.98485 0.85023 0.89116 1.59118 1.16976 1.21880 1.38599 1.23587 0.93258 0.97084 0.87808 0.92023 1.22131 0.93872 0.99974 0.86360 1.47245 1.44521 1.38782 1.06819 1.15658 0.79151 0.79694 0.84060 1.90779 1.63393 1.55936 1.34176 1.42372 1.35923 1.44862 1.07312 1.18241 0.87889 0.87718 0.92759 1.21834 1.06439 1.03011 1.02618 1.20838 0.94356 0.96129 0.96179 1.21724 1.05277 1.06704 0.97468 1.18173 0.88293 0.86579 0.91660 1.19566 1.09748 1.20665 0.96787 0.89634 1.26036 0.94922 0.93951 1.00376 1.70126 1.21572 1.13353 1.29584 0.86318 0.80848 0.78409 0.81247 1.19529 1.20218 1.18515 1.68007 1.07260 1.24802 1.22607 1.22459 0.94592 1.00221 0.87715 1.23051 0.93566 0.98760 0.87403 1.87932 1.75759 1.51950 1.13191 0.93017 0.91819 0.91322 0.84441 0.84059 0.88178 0.90903 0.76088 0.84393 0.88327 0.88209 0.91916 0.90226 0.89025 0.92548 0.87390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.34 37.16 0.35 -0.77 16 2 C 0.10 0.84 3.21 -67.71 -0.22 0.63 16 3 H 0.09 0.80 8.14 -51.92 -0.42 0.38 16 4 N -0.84 -6.86 9.14 -4.66 -0.04 -6.90 16 5 C 0.04 0.44 2.51 -26.58 -0.07 0.37 16 6 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 7 C 0.10 1.19 5.37 -3.53 -0.02 1.17 16 8 N -0.63 -9.02 3.01 -177.75 -0.54 -9.56 16 9 C 0.71 13.48 8.21 -86.91 -0.71 12.77 16 10 O -0.57 -12.24 12.47 5.30 0.07 -12.18 16 11 N -0.66 -13.47 5.32 -15.79 -0.08 -13.55 16 12 C 0.37 9.22 7.50 -155.00 -1.16 8.06 16 13 C -0.31 -7.76 8.91 -38.89 -0.35 -8.11 16 14 C -0.05 -1.20 10.15 -39.39 -0.40 -1.60 16 15 C -0.29 -7.28 9.83 -38.66 -0.38 -7.66 16 16 C 0.28 7.70 6.55 -84.99 -0.56 7.15 16 17 C -0.44 -11.59 9.13 -37.73 -0.34 -11.93 16 18 H 0.09 2.13 7.85 -52.49 -0.41 1.72 16 19 C 0.07 1.79 5.49 -17.35 -0.10 1.69 16 20 N -0.72 -18.64 11.48 55.55 0.64 -18.00 16 21 Si 0.91 18.33 29.56 -169.99 -5.03 13.30 16 22 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 23 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 24 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 25 N -0.51 -13.87 7.91 -10.26 -0.08 -13.96 16 26 C 0.07 0.83 6.59 -3.31 -0.02 0.81 16 27 C 0.05 0.47 7.00 37.53 0.26 0.74 16 28 O -0.37 -3.89 9.72 -35.23 -0.34 -4.23 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.57 7.69 -51.93 -0.40 0.17 16 32 H 0.34 2.63 9.00 -39.29 -0.35 2.27 16 33 H 0.35 2.76 7.60 -39.29 -0.30 2.47 16 34 H 0.10 1.27 6.14 -51.93 -0.32 0.95 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.40 7.41 6.39 -40.82 -0.26 7.15 16 37 H 0.14 3.38 5.15 -52.95 -0.27 3.11 16 38 H 0.10 2.03 8.06 -52.49 -0.42 1.61 16 39 H 0.10 2.30 8.06 -52.49 -0.42 1.88 16 40 H 0.27 6.26 8.29 -40.82 -0.34 5.92 16 41 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.09 1.02 5.79 -51.93 -0.30 0.72 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 354.90 15.07 5.35 5.35 Total: -1.00 -31.62 354.90 -9.75 -41.37 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: -5.98 Total: 15.04 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: -3.71 Total: 3.31 kcal Atomic # 7 Polarization: -61.86 SS G_CDS: -0.11 Total: -61.97 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: -0.28 Total: -16.41 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.03 Total: 13.30 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.62 -9.75 -41.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576140168.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.942 kcal (2) G-P(sol) polarization free energy of solvation -31.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds