Wall clock time and date at job start Tue Mar 31 2020 12:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.78145 * 2 1 4 4 C 1.53239 * 109.62696 * 239.51879 * 2 1 3 5 5 N 1.46899 * 109.33479 * 186.46022 * 4 2 1 6 6 C 1.46904 * 110.99939 * 187.25096 * 5 4 2 7 7 C 1.50693 * 109.47556 * 169.99995 * 6 5 4 8 8 C 1.38801 * 119.90491 * 94.99599 * 7 6 5 9 9 N 1.31753 * 120.13101 * 179.97438 * 8 7 6 10 10 C 1.33070 * 119.92300 * 0.02562 * 9 8 7 11 11 C 1.48042 * 120.09719 * 180.02562 * 10 9 8 12 12 O 1.21433 * 119.99751 * 179.97438 * 11 10 9 13 13 O 1.34676 * 120.00042 * 359.97438 * 11 10 9 14 14 C 1.39434 * 119.80219 * 0.02562 * 10 9 8 15 15 N 1.32110 * 119.87647 * 0.25119 * 14 10 9 16 16 C 1.46905 * 111.27214 * 63.10305 * 5 4 2 17 17 C 1.53235 * 109.33831 * 296.89251 * 16 5 4 18 18 H 1.08997 * 109.63004 * 173.53862 * 17 16 5 19 19 C 1.52999 * 109.63020 * 294.12219 * 17 16 5 20 20 N 1.47074 * 109.62958 * 120.48519 * 2 1 3 21 21 C 1.36936 * 120.88076 * 350.87193 * 20 2 1 22 22 H 1.08000 * 120.00424 * 26.27348 * 21 20 2 23 23 C 1.38811 * 120.00261 * 206.26966 * 21 20 2 24 24 N 1.31626 * 119.99647 * 17.40477 * 23 21 20 25 25 Si 1.86800 * 120.00444 * 197.40560 * 23 21 20 26 26 H 1.48502 * 109.46907 * 60.00143 * 25 23 21 27 27 H 1.48495 * 109.47273 * 180.02562 * 25 23 21 28 28 H 1.48492 * 109.47015 * 300.00276 * 25 23 21 29 29 H 1.08996 * 109.46707 * 180.48381 * 1 2 3 30 30 H 1.08995 * 109.46947 * 300.48778 * 1 2 3 31 31 H 1.09000 * 109.46711 * 60.48303 * 1 2 3 32 32 H 1.08996 * 109.49609 * 66.49926 * 4 2 1 33 33 H 1.08998 * 109.51257 * 306.43027 * 4 2 1 34 34 H 1.09005 * 109.47052 * 49.99581 * 6 5 4 35 35 H 1.09003 * 109.46869 * 289.99848 * 6 5 4 36 36 H 1.08004 * 119.93403 * 359.97438 * 8 7 6 37 37 H 0.96705 * 117.00227 * 179.97438 * 13 11 10 38 38 H 1.08003 * 120.06293 * 179.97438 * 14 10 9 39 39 H 1.08999 * 109.49459 * 56.85319 * 16 5 4 40 40 H 1.08996 * 109.49153 * 176.93125 * 16 5 4 41 41 H 1.08995 * 109.47307 * 179.02893 * 19 17 16 42 42 H 1.09005 * 109.47027 * 299.02856 * 19 17 16 43 43 H 1.09000 * 109.47378 * 59.02275 * 19 17 16 44 44 H 0.97004 * 119.99505 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8990 1.0257 0.0000 4 6 2.0448 -0.7322 -1.2439 5 7 3.5055 -0.8643 -1.1609 6 6 4.0569 -1.4060 -2.4101 7 6 5.5598 -1.2990 -2.3839 8 6 6.3234 -2.3799 -1.9655 9 7 7.6377 -2.2914 -1.9414 10 6 8.2340 -1.1631 -2.3184 11 6 9.7106 -1.0596 -2.2933 12 8 10.2530 -0.0293 -2.6381 13 8 10.4524 -2.1081 -1.8880 14 6 7.4640 -0.0787 -2.7371 15 7 6.1465 -0.1742 -2.7530 16 6 3.9016 -1.6870 -0.0101 17 6 3.4630 -0.9939 1.2842 18 1 3.6509 -1.6511 2.1333 19 6 4.2416 0.3117 1.4575 20 7 2.0241 -0.7028 1.1938 21 6 1.1673 -1.0757 2.1947 22 1 0.1255 -1.2559 1.9746 23 6 1.6378 -1.2222 3.4924 24 7 2.7898 -0.6881 3.8390 25 14 0.6362 -2.1775 4.7469 26 1 0.4502 -3.5725 4.2731 27 1 1.3519 -2.1874 6.0480 28 1 -0.6900 -1.5315 4.9170 29 1 -0.3632 -1.0276 0.0087 30 1 -0.3633 0.5214 0.8855 31 1 -0.3633 0.5063 -0.8943 32 1 1.7811 -0.1637 -2.1357 33 1 1.5924 -1.7224 -1.2967 34 1 3.6669 -0.8390 -3.2554 35 1 3.7689 -2.4525 -2.5106 36 1 5.8391 -3.2954 -1.6592 37 1 11.4126 -1.9932 -1.8891 38 1 7.9436 0.8392 -3.0436 39 1 3.4234 -2.6640 -0.0796 40 1 4.9845 -1.8111 -0.0074 41 1 3.9154 0.8109 2.3698 42 1 5.3074 0.0930 1.5242 43 1 4.0569 0.9612 0.6019 44 1 3.1184 -0.7902 4.7460 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594548044.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:38 Heat of formation + Delta-G solvation = 1.624874 kcal Electronic energy + Delta-G solvation = -27653.553516 eV Core-core repulsion = 23800.426523 eV Total energy + Delta-G solvation = -3853.126993 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.60968 -40.08384 -38.58407 -36.44557 -35.41224 -34.39699 -32.74536 -32.17175 -31.10874 -28.34665 -27.38567 -26.11255 -24.96067 -24.89390 -23.71212 -22.33944 -21.63413 -20.61995 -18.89787 -18.60502 -17.82899 -17.44116 -16.38094 -16.26007 -16.14795 -15.58150 -15.07505 -14.91427 -14.52729 -14.19604 -14.07573 -13.85600 -13.48026 -13.21220 -13.01447 -12.60459 -12.07779 -11.92238 -11.88988 -11.80937 -11.60740 -11.43960 -11.26629 -11.24480 -10.99121 -10.93146 -10.66491 -10.57488 -10.47482 -10.04485 -9.96059 -9.62796 -9.51273 -9.35363 -9.24939 -8.48046 -7.92061 -6.65431 -5.76687 -3.17607 -0.00505 0.82704 2.08391 2.48629 3.37409 3.40474 3.44407 3.44776 3.77654 3.82200 4.10274 4.35233 4.49401 4.65027 4.76798 5.01003 5.20263 5.25419 5.33854 5.42587 5.52444 5.73360 5.83116 5.97354 6.00099 6.04908 6.07263 6.13093 6.26533 6.28505 6.38653 6.56895 6.80712 6.86654 6.93615 6.99861 7.06407 7.21049 7.36688 7.43566 7.43859 7.58320 7.70525 7.80550 7.93343 8.44741 9.23454 9.86025 10.43629 11.30816 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017905 B = 0.003421 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.401616 B = 8183.771075 C = 9055.237786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.171 3.829 3 H 0.034 0.966 4 C 0.052 3.948 5 N -0.520 5.520 6 C 0.096 3.904 7 C 0.141 3.859 8 C 0.055 3.945 9 N -0.385 5.385 10 C 0.020 3.980 11 C 0.552 3.448 12 O -0.504 6.504 13 O -0.492 6.492 14 C 0.124 3.876 15 N -0.419 5.419 16 C 0.035 3.965 17 C 0.200 3.800 18 H 0.096 0.904 19 C -0.134 4.134 20 N -0.585 5.585 21 C -0.251 4.251 22 H 0.071 0.929 23 C 0.003 3.997 24 N -0.898 5.898 25 Si 0.899 3.101 26 H -0.286 1.286 27 H -0.292 1.292 28 H -0.284 1.284 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.039 0.961 32 H 0.064 0.936 33 H 0.032 0.968 34 H 0.096 0.904 35 H 0.055 0.945 36 H 0.178 0.822 37 H 0.414 0.586 38 H 0.184 0.816 39 H 0.030 0.970 40 H 0.055 0.945 41 H 0.073 0.927 42 H 0.015 0.985 43 H 0.033 0.967 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.166 -2.917 -14.046 16.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.064 3.936 3 H 0.052 0.948 4 C -0.077 4.077 5 N -0.245 5.245 6 C -0.033 4.033 7 C -0.002 4.002 8 C -0.110 4.110 9 N -0.102 5.102 10 C -0.119 4.119 11 C 0.394 3.606 12 O -0.392 6.392 13 O -0.302 6.302 14 C -0.035 4.035 15 N -0.134 5.134 16 C -0.094 4.094 17 C 0.093 3.907 18 H 0.114 0.886 19 C -0.193 4.193 20 N -0.308 5.308 21 C -0.380 4.380 22 H 0.089 0.911 23 C -0.196 4.196 24 N -0.543 5.543 25 Si 0.729 3.271 26 H -0.213 1.213 27 H -0.218 1.218 28 H -0.211 1.211 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.058 0.942 32 H 0.082 0.918 33 H 0.050 0.950 34 H 0.114 0.886 35 H 0.073 0.927 36 H 0.195 0.805 37 H 0.273 0.727 38 H 0.201 0.799 39 H 0.048 0.952 40 H 0.073 0.927 41 H 0.092 0.908 42 H 0.034 0.966 43 H 0.053 0.947 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 8.194 -2.190 -13.885 16.271 hybrid contribution 0.016 -1.242 0.696 1.424 sum 8.210 -3.432 -13.189 15.910 Atomic orbital electron populations 1.21799 0.95921 1.01364 1.00453 1.20463 0.92308 0.94322 0.86467 0.94792 1.22708 0.85568 0.99471 0.99978 1.61942 1.11731 1.50211 1.00592 1.21051 0.86696 0.99575 0.95964 1.22713 0.98669 0.89065 0.89713 1.23816 0.89199 1.00632 0.97334 1.68425 1.11303 1.23036 1.07412 1.20950 0.92160 0.93582 1.05189 1.20204 0.86806 0.80613 0.73009 1.90924 1.72868 1.30314 1.45074 1.84682 1.24998 1.41635 1.78849 1.23873 0.89593 0.98357 0.91696 1.68576 1.09289 1.23537 1.11981 1.23009 0.98439 0.94818 0.93110 1.20371 0.82962 0.95198 0.92139 0.88611 1.21944 0.96282 0.99514 1.01542 1.44291 1.03418 1.65033 1.18018 1.19153 0.92811 1.39479 0.86573 0.91121 1.24990 0.97636 1.00249 0.96705 1.70010 1.21085 1.45061 1.18129 0.86433 0.79515 0.80313 0.80858 1.21261 1.21756 1.21060 0.92887 0.91803 0.94159 0.91751 0.94989 0.88595 0.92668 0.80484 0.72711 0.79946 0.95198 0.92655 0.90784 0.96552 0.94741 0.93728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 7.93 37.16 0.29 -2.14 16 2 C 0.17 3.39 3.26 -67.49 -0.22 3.17 16 3 H 0.03 0.74 7.63 -51.93 -0.40 0.34 16 4 C 0.05 0.85 4.91 -3.70 -0.02 0.83 16 5 N -0.52 -8.48 4.11 -235.76 -0.97 -9.45 16 6 C 0.10 1.21 5.31 -4.98 -0.03 1.19 16 7 C 0.14 1.83 5.65 -82.27 -0.46 1.37 16 8 C 0.05 0.67 9.33 -17.38 -0.16 0.51 16 9 N -0.39 -5.11 10.28 -9.63 -0.10 -5.21 16 10 C 0.02 0.25 6.75 -82.86 -0.56 -0.31 16 11 C 0.55 6.41 8.33 34.75 0.29 6.70 16 12 O -0.50 -6.52 17.13 -19.21 -0.33 -6.85 16 13 O -0.49 -4.57 13.26 -40.43 -0.54 -5.11 16 14 C 0.12 1.54 10.77 -16.99 -0.18 1.35 16 15 N -0.42 -5.76 10.41 -8.93 -0.09 -5.85 16 16 C 0.04 0.64 4.78 -3.70 -0.02 0.62 16 17 C 0.20 4.53 2.35 -67.49 -0.16 4.37 16 18 H 0.10 2.48 6.11 -51.93 -0.32 2.16 16 19 C -0.13 -3.05 8.96 37.16 0.33 -2.72 16 20 N -0.58 -13.70 2.73 -157.01 -0.43 -14.13 16 21 C -0.25 -6.45 8.73 -15.06 -0.13 -6.58 16 22 H 0.07 1.78 6.15 -52.49 -0.32 1.45 16 23 C 0.00 0.07 4.93 -17.43 -0.09 -0.02 16 24 N -0.90 -24.79 9.79 55.49 0.54 -24.25 16 25 Si 0.90 21.06 29.59 -169.99 -5.03 16.03 16 26 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 27 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 28 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 29 H 0.05 0.95 7.54 -51.93 -0.39 0.55 16 30 H 0.06 1.23 7.57 -51.93 -0.39 0.84 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.92 7.99 -51.93 -0.41 0.50 16 33 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.10 1.12 7.97 -51.93 -0.41 0.70 16 35 H 0.06 0.60 8.03 -51.93 -0.42 0.18 16 36 H 0.18 1.76 8.06 -52.48 -0.42 1.34 16 37 H 0.41 1.63 9.11 45.56 0.42 2.04 16 38 H 0.18 1.89 7.65 -52.48 -0.40 1.48 16 39 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.96 5.98 -51.93 -0.31 0.65 16 41 H 0.07 1.92 6.91 -51.93 -0.36 1.56 16 42 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.03 0.77 7.08 -51.93 -0.37 0.40 16 44 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 355.27 15.07 5.35 5.35 Total: -1.00 -31.06 355.27 -8.04 -39.10 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -5.34 Total: 1.99 kcal Atomic # 6 Polarization: 9.47 SS G_CDS: -1.11 Total: 8.36 kcal Atomic # 7 Polarization: -57.84 SS G_CDS: -1.05 Total: -58.88 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: -0.87 Total: -11.96 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.03 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.06 -8.04 -39.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594548044.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.723 kcal (2) G-P(sol) polarization free energy of solvation -31.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds