Wall clock time and date at job start Tue Mar 31 2020 13:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46503 * 109.47478 * 2 1 4 4 C 1.46499 * 119.99892 * 275.00430 * 3 2 1 5 5 C 1.50702 * 109.47175 * 274.99791 * 4 3 2 6 6 H 1.08002 * 119.99801 * 359.97438 * 5 4 3 7 7 C 1.37881 * 120.00045 * 180.02562 * 5 4 3 8 8 N 1.31504 * 119.99723 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99821 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47141 * 59.99805 * 9 7 5 11 11 H 1.48493 * 109.47047 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46801 * 299.99785 * 9 7 5 13 13 S 1.65595 * 120.00031 * 95.00114 * 3 2 1 14 14 O 1.42093 * 106.40292 * 156.46640 * 13 3 2 15 15 O 1.42101 * 106.40322 * 23.54017 * 13 3 2 16 16 N 1.65601 * 107.21588 * 270.00265 * 13 3 2 17 17 C 1.46925 * 120.63193 * 270.01884 * 16 13 3 18 18 C 1.53191 * 108.77709 * 233.59112 * 17 16 13 19 19 C 1.53042 * 109.31188 * 305.36111 * 18 17 16 20 20 C 1.53046 * 109.53405 * 61.36872 * 19 18 17 21 21 C 1.52997 * 109.49784 * 58.58617 * 20 19 18 22 22 C 1.52999 * 109.51948 * 178.66482 * 20 19 18 23 23 O 1.42901 * 109.47654 * 299.91761 * 22 20 19 24 24 C 1.46932 * 120.63134 * 90.00268 * 16 13 3 25 25 H 1.09005 * 109.47007 * 299.99769 * 1 2 3 26 26 H 1.09000 * 109.47481 * 59.99750 * 1 2 3 27 27 H 1.09000 * 109.47372 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47007 * 240.00231 * 2 1 3 29 29 H 1.09000 * 109.47481 * 120.00249 * 2 1 3 30 30 H 1.09001 * 109.47367 * 34.99758 * 4 3 2 31 31 H 1.09000 * 109.46985 * 154.99572 * 4 3 2 32 32 H 0.97009 * 120.00090 * 180.02562 * 8 7 5 33 33 H 1.08998 * 109.58435 * 353.37594 * 17 16 13 34 34 H 1.08998 * 109.58438 * 113.65941 * 17 16 13 35 35 H 1.08993 * 109.50198 * 65.31926 * 18 17 16 36 36 H 1.09002 * 109.49422 * 185.38482 * 18 17 16 37 37 H 1.09004 * 109.46241 * 301.34801 * 19 18 17 38 38 H 1.09001 * 109.46203 * 181.38369 * 19 18 17 39 39 H 1.09002 * 109.47153 * 300.15935 * 21 20 19 40 40 H 1.09001 * 109.46832 * 180.16126 * 21 20 19 41 41 H 1.09004 * 109.47261 * 60.16107 * 21 20 19 42 42 H 1.09004 * 109.47425 * 59.92504 * 22 20 19 43 43 H 1.09005 * 109.46892 * 179.91505 * 22 20 19 44 44 H 0.96695 * 113.99955 * 180.02562 * 23 22 20 45 45 H 1.09005 * 109.58591 * 6.62226 * 24 16 13 46 46 H 1.09003 * 109.58675 * 246.19876 * 24 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.4947 1.7888 -1.8824 6 1 4.1723 1.1116 -1.3837 7 6 3.8528 2.3614 -3.0845 8 7 3.0279 3.1862 -3.6915 9 14 5.5098 1.9653 -3.8508 10 1 5.6001 0.5055 -4.1077 11 1 5.6515 2.7026 -5.1319 12 1 6.5946 2.3726 -2.9220 13 16 2.4123 2.1201 1.4286 14 8 3.3284 3.1570 1.1049 15 8 2.7096 1.0799 2.3499 16 7 1.0432 2.8642 1.9894 17 6 0.7371 4.2510 1.6129 18 6 0.5032 5.0678 2.8875 19 6 -0.5806 4.3916 3.7303 20 6 -0.1155 2.9903 4.1332 21 6 1.1921 3.0929 4.9208 22 6 -1.1851 2.3272 5.0035 23 8 -1.3974 3.1124 6.1784 24 6 0.1113 2.1499 2.8727 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.3617 1.8098 -1.9453 31 1 2.0921 3.1803 -1.0756 32 1 3.2796 3.5888 -4.5374 33 1 1.5751 4.6722 1.0575 34 1 -0.1594 4.2719 0.9933 35 1 1.4290 5.1215 3.4603 36 1 0.1818 6.0746 2.6205 37 1 -1.4990 4.3161 3.1482 38 1 -0.7664 4.9841 4.6262 39 1 1.9535 3.5664 4.3008 40 1 1.5244 2.0945 5.2050 41 1 1.0302 3.6910 5.8176 42 1 -2.1165 2.2543 4.4420 43 1 -0.8537 1.3287 5.2887 44 1 -2.0641 2.7506 6.7781 45 1 0.5364 1.1848 3.1486 46 1 -0.8377 1.9997 2.3579 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645759381.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:59 Heat of formation + Delta-G solvation = -135.246139 kcal Electronic energy + Delta-G solvation = -27737.108368 eV Core-core repulsion = 23981.197403 eV Total energy + Delta-G solvation = -3755.910965 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.55984 -36.72056 -36.60043 -36.01804 -35.14042 -33.12537 -32.66178 -31.75237 -29.97714 -27.14158 -26.59491 -26.02750 -24.40780 -23.12131 -22.02151 -21.59800 -18.94328 -18.13564 -17.57698 -17.44549 -16.67807 -16.26461 -15.69297 -15.34816 -14.90301 -14.75696 -14.43250 -14.20309 -13.95142 -13.63349 -13.41458 -13.18294 -12.93808 -12.74152 -12.61653 -12.10523 -12.02251 -11.83698 -11.69686 -11.66167 -11.54211 -11.34996 -11.20239 -11.03576 -10.96899 -10.89660 -10.75510 -10.48003 -10.41790 -10.39663 -10.23828 -10.06253 -9.97873 -9.75830 -8.77707 -8.42671 -8.05153 -6.05520 -4.09314 1.20119 3.34331 3.37756 3.42195 3.46389 3.97484 4.14545 4.45522 4.56835 4.69829 4.85046 4.93882 5.14303 5.19642 5.27548 5.28535 5.29380 5.35021 5.42493 5.52632 5.56614 5.69032 5.70736 5.73507 5.84778 5.88331 5.93763 5.99367 6.03785 6.08914 6.19065 6.27144 6.30878 6.41170 6.48324 6.58464 6.61614 6.82475 7.25366 7.41834 7.43491 7.64361 7.92132 8.22031 8.92664 9.55768 11.02966 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023054 B = 0.004160 C = 0.003986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.232209 B = 6729.649179 C = 7022.436634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.117 3.883 3 N -0.991 5.991 4 C 0.259 3.741 5 C -0.529 4.529 6 H 0.059 0.941 7 C 0.063 3.937 8 N -0.896 5.896 9 Si 0.896 3.104 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.274 1.274 13 S 2.778 3.222 14 O -0.962 6.962 15 O -0.996 6.996 16 N -1.006 6.006 17 C 0.119 3.881 18 C -0.134 4.134 19 C -0.099 4.099 20 C -0.071 4.071 21 C -0.139 4.139 22 C 0.087 3.913 23 O -0.568 6.568 24 C 0.132 3.868 25 H 0.047 0.953 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.034 0.966 31 H 0.036 0.964 32 H 0.264 0.736 33 H 0.095 0.905 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.056 0.944 40 H 0.055 0.945 41 H 0.062 0.938 42 H 0.046 0.954 43 H 0.048 0.952 44 H 0.376 0.624 45 H 0.090 0.910 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.346 -1.383 15.010 19.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.010 4.010 3 N -0.833 5.833 4 C 0.137 3.863 5 C -0.569 4.569 6 H 0.077 0.923 7 C -0.139 4.139 8 N -0.535 5.535 9 Si 0.723 3.277 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.200 1.200 13 S 2.787 3.213 14 O -0.946 6.946 15 O -0.980 6.980 16 N -0.844 5.844 17 C -0.007 4.007 18 C -0.173 4.173 19 C -0.137 4.137 20 C -0.073 4.073 21 C -0.196 4.196 22 C 0.009 3.991 23 O -0.373 6.373 24 C 0.005 3.995 25 H 0.066 0.934 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.102 0.898 29 H 0.093 0.907 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.114 0.886 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.081 0.919 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.222 0.778 45 H 0.108 0.892 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.024 -0.891 14.941 18.589 hybrid contribution 0.002 -0.539 -0.567 0.782 sum -11.022 -1.430 14.374 18.170 Atomic orbital electron populations 1.22274 0.97307 1.01352 1.02083 1.21133 0.93051 0.83346 1.03435 1.57796 1.80893 1.21335 1.23251 1.18999 0.97274 0.91025 0.78961 1.21461 1.02108 1.27721 1.05572 0.92309 1.24913 0.97331 0.94811 0.96854 1.69904 1.36129 1.30221 1.17238 0.86594 0.84279 0.78420 0.78393 1.20187 1.21164 1.19986 1.02075 0.73304 0.73115 0.72771 1.93613 1.59190 1.57646 1.84127 1.93500 1.83289 1.57795 1.63390 1.58354 1.42635 1.22228 1.61201 1.21413 1.02455 0.80307 0.96480 1.21942 0.99840 0.98724 0.96828 1.21434 0.97804 0.94756 0.99680 1.20875 0.95612 0.96515 0.94302 1.21821 0.95854 1.02129 0.99799 1.22133 0.97353 0.93390 0.86224 1.86477 1.63678 1.52971 1.34138 1.21287 0.93937 0.94996 0.89252 0.93356 0.91947 0.92280 0.89779 0.90726 0.94758 0.94656 0.92664 0.88644 0.91594 0.91157 0.90936 0.92170 0.91137 0.92481 0.92578 0.91889 0.93558 0.93396 0.77777 0.89155 0.91620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.37 10.24 37.15 0.38 -1.99 16 2 C 0.12 2.03 6.40 -4.04 -0.03 2.00 16 3 N -0.99 -20.58 2.82 -115.66 -0.33 -20.90 16 4 C 0.26 6.45 5.10 -5.19 -0.03 6.43 16 5 C -0.53 -14.88 9.38 -34.44 -0.32 -15.20 16 6 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 7 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 8 N -0.90 -26.01 13.28 55.43 0.74 -25.28 16 9 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 13 S 2.78 56.16 6.10 -107.50 -0.66 55.50 16 14 O -0.96 -23.30 15.70 -57.17 -0.90 -24.20 16 15 O -1.00 -20.67 15.28 -57.17 -0.87 -21.55 16 16 N -1.01 -15.63 2.79 -113.52 -0.32 -15.95 16 17 C 0.12 1.71 6.48 -3.71 -0.02 1.69 16 18 C -0.13 -1.62 5.74 -26.61 -0.15 -1.78 16 19 C -0.10 -1.09 4.59 -26.69 -0.12 -1.21 16 20 C -0.07 -0.81 0.60 -154.39 -0.09 -0.90 16 21 C -0.14 -1.79 7.84 37.16 0.29 -1.50 16 22 C 0.09 0.78 5.92 37.16 0.22 1.00 16 23 O -0.57 -5.03 12.30 -35.23 -0.43 -5.46 16 24 C 0.13 1.66 4.20 -3.71 -0.02 1.64 16 25 H 0.05 0.60 6.44 -51.93 -0.33 0.27 16 26 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.08 1.51 8.11 -51.93 -0.42 1.09 16 29 H 0.07 1.23 6.91 -51.93 -0.36 0.87 16 30 H 0.03 0.87 8.11 -51.93 -0.42 0.44 16 31 H 0.04 0.93 7.61 -51.93 -0.40 0.54 16 32 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 33 H 0.10 1.58 6.92 -51.93 -0.36 1.22 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 0.91 6.33 -51.93 -0.33 0.58 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.78 7.65 -51.93 -0.40 0.38 16 39 H 0.06 0.82 5.97 -51.93 -0.31 0.51 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.06 0.77 7.68 -51.93 -0.40 0.37 16 42 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 44 H 0.38 1.63 9.12 45.56 0.42 2.04 16 45 H 0.09 1.17 6.92 -51.93 -0.36 0.81 16 46 H 0.07 0.70 7.50 -51.93 -0.39 0.31 16 LS Contribution 367.58 15.07 5.54 5.54 Total: -1.00 -33.76 367.58 -9.22 -42.98 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -6.98 Total: 0.57 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: 0.01 Total: -8.13 kcal Atomic # 7 Polarization: -62.22 SS G_CDS: 0.09 Total: -62.13 kcal Atomic # 8 Polarization: -49.00 SS G_CDS: -2.20 Total: -51.21 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: 56.16 SS G_CDS: -0.66 Total: 55.50 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.76 -9.22 -42.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645759381.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.269 kcal (2) G-P(sol) polarization free energy of solvation -33.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds