Wall clock time and date at job start Tue Mar 31 2020 13:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.47359 * 2 1 4 4 C 1.46493 * 120.00008 * 276.45149 * 3 2 1 5 5 C 1.50706 * 109.47019 * 274.99782 * 4 3 2 6 6 H 1.08000 * 119.99933 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00072 * 180.02562 * 5 4 3 8 8 N 1.31511 * 119.99725 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 119.99994 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.46988 * 90.00096 * 9 7 5 11 11 H 1.48504 * 109.47108 * 210.00328 * 9 7 5 12 12 H 1.48503 * 109.47464 * 330.00205 * 9 7 5 13 13 S 1.65597 * 120.00206 * 96.44582 * 3 2 1 14 14 O 1.42103 * 106.40436 * 160.21229 * 13 3 2 15 15 O 1.42107 * 106.40246 * 27.28983 * 13 3 2 16 16 N 1.65601 * 107.22107 * 273.75158 * 13 3 2 17 17 C 1.46928 * 120.63130 * 95.99662 * 16 13 3 18 18 C 1.53196 * 108.77669 * 126.37311 * 17 16 13 19 19 C 1.53032 * 109.31290 * 54.63108 * 18 17 16 20 20 C 1.53036 * 109.54281 * 298.63769 * 19 18 17 21 21 C 1.52995 * 109.52647 * 301.39788 * 20 19 18 22 22 C 1.53001 * 109.50008 * 181.31546 * 20 19 18 23 23 O 1.42897 * 109.47417 * 60.16170 * 22 20 19 24 24 C 1.46922 * 120.63123 * 275.97876 * 16 13 3 25 25 H 1.08997 * 109.47244 * 185.11135 * 1 2 3 26 26 H 1.09002 * 109.47216 * 305.11853 * 1 2 3 27 27 H 1.09006 * 109.46676 * 65.10991 * 1 2 3 28 28 H 1.08992 * 109.47437 * 239.99774 * 2 1 3 29 29 H 1.09006 * 109.46507 * 119.99421 * 2 1 3 30 30 H 1.09006 * 109.47402 * 34.99508 * 4 3 2 31 31 H 1.08996 * 109.47704 * 154.99851 * 4 3 2 32 32 H 0.97005 * 119.99705 * 179.97438 * 8 7 5 33 33 H 1.08996 * 109.58914 * 246.16173 * 17 16 13 34 34 H 1.09004 * 109.58765 * 6.44377 * 17 16 13 35 35 H 1.08996 * 109.49943 * 174.58770 * 18 17 16 36 36 H 1.09001 * 109.49248 * 294.65064 * 18 17 16 37 37 H 1.09003 * 109.46239 * 178.61739 * 19 18 17 38 38 H 1.09006 * 109.46017 * 58.66084 * 19 18 17 39 39 H 1.08998 * 109.47071 * 305.47924 * 21 20 19 40 40 H 1.08997 * 109.47335 * 65.47793 * 21 20 19 41 41 H 1.09000 * 109.47389 * 185.48082 * 21 20 19 42 42 H 1.09007 * 109.47182 * 180.16835 * 22 20 19 43 43 H 1.09002 * 109.46812 * 300.15967 * 22 20 19 44 44 H 0.96695 * 114.00678 * 179.97438 * 23 22 20 45 45 H 1.08995 * 109.58754 * 113.84191 * 24 16 13 46 46 H 1.09004 * 109.70091 * 353.48090 * 24 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1282 2.1193 -1.2606 5 6 3.4496 1.8047 -1.9135 6 1 4.1385 1.1229 -1.4371 7 6 3.7791 2.3875 -3.1188 8 7 4.9320 2.1125 -3.6887 9 14 2.5873 3.5663 -3.9431 10 1 2.8619 4.9509 -3.4817 11 1 2.7574 3.4925 -5.4165 12 1 1.1950 3.1927 -3.5863 13 16 2.4462 2.1082 1.4250 14 8 3.2847 3.2028 1.0812 15 8 2.8498 1.0655 2.3021 16 7 1.0698 2.7599 2.0755 17 6 0.2986 2.0239 3.0867 18 6 0.1108 2.9219 4.3136 19 6 -0.5233 4.2454 3.8798 20 6 0.4058 4.9600 2.8959 21 6 1.7618 5.2066 3.5600 22 6 -0.2140 6.2981 2.4881 23 8 -0.3920 7.1138 3.6478 24 6 0.5968 4.0851 1.6528 25 1 -0.3633 -1.0235 0.0916 26 1 -0.3634 0.5912 0.8406 27 1 -0.3633 0.4326 -0.9323 28 1 1.8934 -0.5138 -0.8899 29 1 1.8932 -0.5138 0.8901 30 1 1.3156 1.8260 -1.9254 31 1 2.0667 3.1892 -1.0619 32 1 5.1636 2.5222 -4.5369 33 1 -0.6755 1.7545 2.6786 34 1 0.8379 1.1206 3.3716 35 1 -0.5406 2.4246 5.0322 36 1 1.0796 3.1158 4.7741 37 1 -0.6806 4.8766 4.7544 38 1 -1.4808 4.0485 3.3975 39 1 1.6151 5.7438 4.4971 40 1 2.2471 4.2515 3.7609 41 1 2.3894 5.8003 2.8954 42 1 0.4467 6.8054 1.7850 43 1 -1.1805 6.1220 2.0159 44 1 -0.7813 7.9796 3.4639 45 1 -0.3530 3.9837 1.1279 46 1 1.3323 4.5443 0.9923 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645759382.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:02 Heat of formation + Delta-G solvation = -130.313511 kcal Electronic energy + Delta-G solvation = -27871.167812 eV Core-core repulsion = 24115.470741 eV Total energy + Delta-G solvation = -3755.697071 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.59611 -36.81188 -36.59540 -36.18089 -35.21117 -33.19355 -32.59626 -31.82454 -30.27542 -27.18361 -27.10527 -26.06325 -24.48629 -22.93594 -22.04614 -21.51190 -18.98865 -18.21848 -17.56532 -17.50021 -16.87353 -16.66149 -15.79591 -15.33285 -14.97643 -14.76618 -14.44129 -14.24432 -13.90504 -13.81493 -13.44678 -13.35607 -12.80781 -12.76643 -12.65322 -12.52646 -12.06477 -11.99357 -11.90846 -11.77484 -11.53274 -11.44036 -11.25294 -11.14028 -11.09388 -10.96817 -10.81433 -10.50774 -10.45305 -10.39469 -10.35381 -10.17284 -10.04975 -9.56473 -8.87725 -8.60368 -8.12915 -6.09292 -4.08515 1.08744 3.24689 3.29691 3.30951 3.38005 3.95260 4.08132 4.36668 4.54151 4.66966 4.80511 4.87493 5.07715 5.13390 5.19026 5.20468 5.25847 5.32877 5.35287 5.48281 5.53589 5.61485 5.64883 5.69226 5.72823 5.76863 5.89175 5.91689 5.99024 6.02486 6.13399 6.20300 6.25547 6.32213 6.43687 6.47594 6.51026 6.66550 6.77538 7.10010 7.41454 7.45006 7.57481 8.48143 8.95606 9.49785 11.04358 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014315 B = 0.005364 C = 0.004551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.555833 B = 5218.748642 C = 6150.928533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.117 3.883 3 N -0.986 5.986 4 C 0.228 3.772 5 C -0.531 4.531 6 H 0.077 0.923 7 C 0.074 3.926 8 N -0.895 5.895 9 Si 0.871 3.129 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.265 1.265 13 S 2.778 3.222 14 O -0.959 6.959 15 O -0.990 6.990 16 N -1.007 6.007 17 C 0.118 3.882 18 C -0.134 4.134 19 C -0.098 4.098 20 C -0.071 4.071 21 C -0.135 4.135 22 C 0.086 3.914 23 O -0.568 6.568 24 C 0.131 3.869 25 H 0.060 0.940 26 H 0.050 0.950 27 H 0.059 0.941 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.033 0.967 31 H 0.028 0.972 32 H 0.265 0.735 33 H 0.064 0.936 34 H 0.092 0.908 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.054 0.946 41 H 0.058 0.942 42 H 0.050 0.950 43 H 0.046 0.954 44 H 0.376 0.624 45 H 0.067 0.933 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.815 4.446 13.186 21.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.010 4.010 3 N -0.826 5.826 4 C 0.105 3.895 5 C -0.571 4.571 6 H 0.095 0.905 7 C -0.129 4.129 8 N -0.533 5.533 9 Si 0.698 3.302 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.190 1.190 13 S 2.788 3.212 14 O -0.942 6.942 15 O -0.974 6.974 16 N -0.845 5.845 17 C -0.008 4.008 18 C -0.173 4.173 19 C -0.136 4.136 20 C -0.073 4.073 21 C -0.192 4.192 22 C 0.008 3.992 23 O -0.373 6.373 24 C 0.005 3.995 25 H 0.079 0.921 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.105 0.895 29 H 0.095 0.905 30 H 0.050 0.950 31 H 0.046 0.954 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.110 0.890 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.068 0.932 43 H 0.064 0.936 44 H 0.223 0.777 45 H 0.085 0.915 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -14.542 3.974 13.662 20.345 hybrid contribution -1.149 1.123 -1.176 1.991 sum -15.692 5.097 12.485 20.690 Atomic orbital electron populations 1.22268 0.97183 1.01401 1.02130 1.21166 0.92998 0.82948 1.03869 1.57565 1.81022 1.21436 1.22597 1.19399 0.98256 0.90759 0.81106 1.21379 1.01586 1.28511 1.05581 0.90481 1.24863 0.95093 0.96103 0.96849 1.69897 1.21598 1.43826 1.17990 0.86937 0.81953 0.82269 0.79070 1.19798 1.20965 1.18953 1.02107 0.73166 0.73298 0.72640 1.93621 1.63021 1.53986 1.83607 1.93516 1.80512 1.57748 1.65674 1.58389 1.46400 1.26377 1.53368 1.21407 0.96459 0.94872 0.88038 1.21926 1.01827 0.96204 0.97353 1.21429 0.97392 0.95784 0.99004 1.20870 0.96886 0.93124 0.96402 1.21776 0.95052 1.01610 1.00804 1.22148 0.98803 0.91056 0.87202 1.86460 1.86154 1.31050 1.33661 1.21291 1.00824 0.82100 0.95279 0.92127 0.93076 0.92233 0.89516 0.90451 0.94954 0.95433 0.92527 0.91780 0.88969 0.91057 0.91136 0.91069 0.92230 0.92057 0.92739 0.92316 0.93156 0.93578 0.77732 0.91516 0.88861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.24 10.23 37.16 0.38 -1.86 16 2 C 0.12 1.97 6.41 -4.04 -0.03 1.94 16 3 N -0.99 -19.78 2.83 -115.66 -0.33 -20.11 16 4 C 0.23 5.29 4.18 -5.19 -0.02 5.27 16 5 C -0.53 -15.06 9.94 -34.44 -0.34 -15.40 16 6 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 7 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 8 N -0.89 -27.45 13.96 55.43 0.77 -26.68 16 9 Si 0.87 20.83 27.47 -169.99 -4.67 16.16 16 10 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.26 -5.84 6.54 56.52 0.37 -5.47 16 13 S 2.78 54.63 6.09 -107.50 -0.65 53.97 16 14 O -0.96 -22.39 15.76 -57.17 -0.90 -23.29 16 15 O -0.99 -20.62 15.22 -57.17 -0.87 -21.49 16 16 N -1.01 -14.73 2.70 -113.51 -0.31 -15.03 16 17 C 0.12 1.39 6.01 -3.71 -0.02 1.37 16 18 C -0.13 -1.40 5.74 -26.61 -0.15 -1.55 16 19 C -0.10 -1.01 4.59 -26.70 -0.12 -1.13 16 20 C -0.07 -0.83 0.60 -154.39 -0.09 -0.92 16 21 C -0.14 -1.80 7.65 37.16 0.28 -1.51 16 22 C 0.09 0.84 5.92 37.16 0.22 1.06 16 23 O -0.57 -5.32 12.40 -35.23 -0.44 -5.75 16 24 C 0.13 1.73 5.13 -3.71 -0.02 1.71 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.61 6.99 -51.93 -0.36 0.25 16 27 H 0.06 0.81 8.13 -51.93 -0.42 0.39 16 28 H 0.09 1.54 8.12 -51.93 -0.42 1.12 16 29 H 0.08 1.25 6.94 -51.93 -0.36 0.89 16 30 H 0.03 0.71 7.16 -51.93 -0.37 0.34 16 31 H 0.03 0.64 6.93 -51.93 -0.36 0.28 16 32 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 33 H 0.06 0.63 7.52 -51.93 -0.39 0.24 16 34 H 0.09 1.15 6.79 -51.93 -0.35 0.79 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.81 6.47 -51.93 -0.34 0.48 16 37 H 0.07 0.75 7.65 -51.93 -0.40 0.35 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.76 7.85 -51.93 -0.41 0.36 16 40 H 0.05 0.79 6.15 -51.93 -0.32 0.47 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.38 1.87 9.12 45.56 0.42 2.29 16 45 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.09 1.39 7.08 -51.93 -0.37 1.02 16 LS Contribution 365.29 15.07 5.50 5.50 Total: -1.00 -34.89 365.29 -8.90 -43.80 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -7.00 Total: 1.92 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: -0.01 Total: -9.01 kcal Atomic # 7 Polarization: -61.96 SS G_CDS: 0.14 Total: -61.82 kcal Atomic # 8 Polarization: -48.33 SS G_CDS: -2.21 Total: -50.54 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.67 Total: 16.16 kcal Atomic # 16 Polarization: 54.63 SS G_CDS: -0.65 Total: 53.97 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.89 -8.90 -43.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645759382.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.518 kcal (2) G-P(sol) polarization free energy of solvation -34.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds