Wall clock time and date at job start Tue Mar 31 2020 12:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.46904 * 2 1 4 4 C 1.50703 * 109.47235 * 119.99560 * 2 1 3 5 5 O 1.21282 * 119.99670 * 120.00379 * 4 2 1 6 6 N 1.34772 * 120.00154 * 300.00238 * 4 2 1 7 7 C 1.46505 * 119.99980 * 0.02562 * 6 4 2 8 8 C 1.46496 * 120.00055 * 180.02562 * 6 4 2 9 9 C 1.50702 * 109.47286 * 90.00156 * 8 6 4 10 10 H 1.07996 * 120.00085 * 359.97438 * 9 8 6 11 11 C 1.37876 * 119.99792 * 180.02562 * 9 8 6 12 12 N 1.31523 * 119.99797 * 179.97438 * 11 9 8 13 13 Si 1.86789 * 120.00384 * 359.97438 * 11 9 8 14 14 H 1.48500 * 109.47413 * 89.99771 * 13 11 9 15 15 H 1.48506 * 109.47340 * 209.99934 * 13 11 9 16 16 H 1.48502 * 109.47219 * 329.99610 * 13 11 9 17 17 N 1.46900 * 109.47458 * 240.00027 * 2 1 3 18 18 C 1.47145 * 110.99939 * 69.07973 * 17 2 1 19 19 C 1.52931 * 108.67162 * 165.29182 * 18 17 2 20 20 C 1.50673 * 109.86028 * 50.55558 * 19 18 17 21 21 N 1.32301 * 118.99322 * 163.12285 * 20 19 18 22 22 N 1.28209 * 122.43158 * 179.86482 * 21 20 19 23 23 C 1.32376 * 122.14189 * 359.91178 * 22 21 20 24 24 O 1.35692 * 120.22752 * 180.11809 * 23 22 21 25 25 C 1.39195 * 119.54121 * 0.13907 * 23 22 21 26 26 C 1.38141 * 121.38897 * 343.06738 * 20 19 18 27 27 C 1.46746 * 110.99705 * 306.04456 * 17 2 1 28 28 H 1.09003 * 109.47275 * 300.00030 * 1 2 3 29 29 H 1.08993 * 109.47577 * 60.00600 * 1 2 3 30 30 H 1.09005 * 109.47145 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47086 * 89.99785 * 7 6 4 32 32 H 1.09001 * 109.46741 * 210.00002 * 7 6 4 33 33 H 1.08999 * 109.47089 * 329.99989 * 7 6 4 34 34 H 1.09005 * 109.47071 * 210.00192 * 8 6 4 35 35 H 1.08998 * 109.47393 * 329.99827 * 8 6 4 36 36 H 0.96995 * 120.00079 * 179.97438 * 12 11 9 37 37 H 1.08999 * 109.60744 * 285.04507 * 18 17 2 38 38 H 1.09004 * 109.60375 * 45.37864 * 18 17 2 39 39 H 1.09008 * 109.40366 * 170.67482 * 19 18 17 40 40 H 1.08999 * 109.40966 * 290.50973 * 19 18 17 41 41 H 0.96704 * 113.99745 * 270.02038 * 24 23 22 42 42 H 1.08003 * 121.03488 * 179.97438 * 25 23 22 43 43 H 1.09001 * 109.32469 * 295.83094 * 27 17 2 44 44 H 1.09003 * 109.32315 * 55.28690 * 27 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.7297 -1.6964 1.1192 6 7 1.7067 -0.2498 2.4546 7 6 0.8640 0.9410 2.5890 8 6 2.1956 -0.9400 3.6508 9 6 3.5229 -0.3559 4.0607 10 1 3.9590 0.4487 3.4873 11 6 4.1810 -0.8493 5.1671 12 7 5.3397 -0.3399 5.5246 13 14 3.4272 -2.2414 6.1585 14 1 3.8872 -3.5436 5.6126 15 1 3.8484 -2.1231 7.5777 16 1 1.9467 -2.1644 6.0737 17 7 2.0197 -0.6925 -1.1994 18 6 1.7331 0.0885 -2.4131 19 6 2.5668 -0.4737 -3.5653 20 6 2.3848 -1.9671 -3.6478 21 7 2.7380 -2.5959 -4.7570 22 7 2.6143 -3.8643 -4.8975 23 6 2.1247 -4.6346 -3.9387 24 8 2.0132 -5.9736 -4.1283 25 6 1.7248 -4.0616 -2.7349 26 6 1.8600 -2.6874 -2.5923 27 6 1.4350 -2.0340 -1.3076 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.1838 0.6426 2.6225 32 1 1.1217 1.4666 3.5084 33 1 1.0270 1.5996 1.7360 34 1 1.4776 -0.8149 4.4614 35 1 2.3171 -2.0013 3.4338 36 1 5.8025 -0.6867 6.3032 37 1 0.6735 0.0104 -2.6565 38 1 1.9939 1.1335 -2.2458 39 1 2.2451 -0.0174 -4.5015 40 1 3.6193 -0.2472 -3.3950 41 1 1.1671 -6.2480 -4.5078 42 1 1.3217 -4.6672 -1.9367 43 1 1.7684 -2.6418 -0.4664 44 1 0.3480 -1.9567 -1.2847 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647146070.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:09 Heat of formation + Delta-G solvation = 14.018183 kcal Electronic energy + Delta-G solvation = -27503.462680 eV Core-core repulsion = 23650.873101 eV Total energy + Delta-G solvation = -3852.589579 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.62714 -40.01977 -38.28228 -37.40906 -35.07192 -34.14868 -33.36182 -32.56093 -30.67517 -29.73299 -28.21288 -26.73351 -26.10139 -24.81978 -23.79415 -23.42506 -21.99017 -20.42334 -19.08833 -18.70225 -17.69406 -17.03516 -16.86988 -16.28257 -16.01340 -15.86576 -15.42356 -14.89053 -14.72421 -14.59700 -14.24610 -13.86886 -13.76801 -13.34744 -13.18452 -12.94801 -12.66287 -12.48471 -12.47328 -12.32307 -12.16339 -11.97187 -11.91765 -11.57979 -11.47543 -11.30597 -11.00442 -10.94151 -10.56641 -10.18927 -10.07047 -9.64793 -9.56533 -9.50848 -9.04888 -8.62164 -8.39648 -7.77068 -6.11628 -4.10843 0.55468 0.61282 3.04041 3.20905 3.25355 3.28658 3.31538 3.33463 3.40898 3.84985 4.01530 4.23744 4.26694 4.36111 4.63130 4.70322 4.77374 4.86468 4.93772 5.00053 5.04535 5.12806 5.21271 5.27230 5.34888 5.38536 5.52019 5.54910 5.58953 5.72505 5.73172 5.77143 5.79163 5.87340 6.03354 6.11366 6.57518 6.77083 6.79010 6.90663 7.06283 7.25677 7.56734 8.15656 8.43031 8.51019 8.87600 8.93621 9.48129 11.01794 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015698 B = 0.003397 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.215610 B = 8240.977061 C = 9154.420037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.065 3.935 3 H 0.111 0.889 4 C 0.513 3.487 5 O -0.523 6.523 6 N -0.596 5.596 7 C 0.080 3.920 8 C 0.217 3.783 9 C -0.530 4.530 10 H 0.075 0.925 11 C 0.072 3.928 12 N -0.896 5.896 13 Si 0.876 3.124 14 H -0.274 1.274 15 H -0.285 1.285 16 H -0.266 1.266 17 N -0.507 5.507 18 C 0.049 3.951 19 C -0.058 4.058 20 C 0.075 3.925 21 N -0.218 5.218 22 N -0.262 5.262 23 C 0.250 3.750 24 O -0.473 6.473 25 C -0.136 4.136 26 C -0.045 4.045 27 C 0.078 3.922 28 H 0.085 0.915 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.048 0.952 32 H 0.076 0.924 33 H 0.061 0.939 34 H 0.030 0.970 35 H 0.036 0.964 36 H 0.265 0.735 37 H 0.043 0.957 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.102 0.898 41 H 0.402 0.598 42 H 0.156 0.844 43 H 0.124 0.876 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.893 0.109 -16.319 22.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C -0.046 4.046 3 H 0.129 0.871 4 C 0.298 3.702 5 O -0.398 6.398 6 N -0.329 5.329 7 C -0.063 4.063 8 C 0.097 3.903 9 C -0.568 4.568 10 H 0.093 0.907 11 C -0.130 4.130 12 N -0.535 5.535 13 Si 0.703 3.297 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.191 1.191 17 N -0.230 5.230 18 C -0.080 4.080 19 C -0.097 4.097 20 C -0.070 4.070 21 N -0.064 5.064 22 N -0.114 5.114 23 C 0.065 3.935 24 O -0.278 6.278 25 C -0.166 4.166 26 C -0.056 4.056 27 C -0.049 4.049 28 H 0.103 0.897 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.066 0.934 32 H 0.095 0.905 33 H 0.080 0.920 34 H 0.048 0.952 35 H 0.054 0.946 36 H 0.075 0.925 37 H 0.062 0.938 38 H 0.111 0.889 39 H 0.114 0.886 40 H 0.120 0.880 41 H 0.260 0.740 42 H 0.174 0.826 43 H 0.142 0.858 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.685 -0.531 -17.441 22.176 hybrid contribution -2.049 -0.834 1.894 2.913 sum -15.735 -1.364 -15.547 22.162 Atomic orbital electron populations 1.22708 0.95692 1.03283 1.04039 1.21714 0.93941 0.99227 0.89765 0.87090 1.20043 0.80985 0.85256 0.83909 1.90641 1.36831 1.26617 1.85757 1.47802 1.49982 1.28442 1.06639 1.21827 0.93453 0.88005 1.03051 1.19658 0.95351 0.93639 0.81665 1.21318 1.03101 1.20385 1.12032 0.90724 1.24863 0.94625 0.96443 0.97074 1.69896 1.14731 1.42279 1.26545 0.86855 0.79919 0.83316 0.79585 1.19918 1.21046 1.19131 1.62160 1.58082 1.01555 1.01205 1.22270 0.97810 0.98444 0.89443 1.20412 1.03003 0.87266 0.99006 1.22592 0.94973 0.98985 0.90415 1.73040 1.12123 1.00730 1.20501 1.72798 1.12141 0.99324 1.27145 1.20749 0.96030 0.85655 0.91034 1.84823 1.42387 1.15564 1.85053 1.22435 1.00132 0.94864 0.99188 1.20663 0.95150 0.93356 0.96456 1.21298 0.97305 0.91395 0.94952 0.89676 0.91682 0.91795 0.93362 0.90505 0.92006 0.95245 0.94614 0.92525 0.93838 0.88909 0.88640 0.88030 0.74018 0.82617 0.85808 0.92019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.84 8.08 37.16 0.30 -1.54 16 2 C 0.07 0.83 1.93 -68.87 -0.13 0.70 16 3 H 0.11 1.28 7.16 -51.93 -0.37 0.91 16 4 C 0.51 9.50 6.83 -10.99 -0.07 9.43 16 5 O -0.52 -11.99 13.88 5.56 0.08 -11.91 16 6 N -0.60 -11.28 2.86 -182.95 -0.52 -11.80 16 7 C 0.08 1.08 8.80 59.85 0.53 1.61 16 8 C 0.22 5.08 4.23 -5.19 -0.02 5.06 16 9 C -0.53 -14.89 9.94 -34.44 -0.34 -15.23 16 10 H 0.07 2.31 8.06 -52.49 -0.42 1.89 16 11 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 12 N -0.90 -27.42 13.96 55.43 0.77 -26.65 16 13 Si 0.88 21.20 27.47 -169.99 -4.67 16.53 16 14 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 15 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 16 H -0.27 -6.00 6.54 56.52 0.37 -5.63 16 17 N -0.51 -6.50 4.38 -229.70 -1.01 -7.51 16 18 C 0.05 0.45 4.98 -3.73 -0.02 0.43 16 19 C -0.06 -0.57 6.21 -27.93 -0.17 -0.75 16 20 C 0.07 0.95 6.73 -82.44 -0.56 0.39 16 21 N -0.22 -3.14 11.40 33.56 0.38 -2.76 16 22 N -0.26 -3.83 11.52 30.49 0.35 -3.48 16 23 C 0.25 3.12 7.86 -16.96 -0.13 2.99 16 24 O -0.47 -4.82 13.58 -18.78 -0.25 -5.07 16 25 C -0.14 -1.58 9.83 -39.01 -0.38 -1.97 16 26 C -0.05 -0.57 5.79 -104.66 -0.61 -1.17 16 27 C 0.08 0.98 4.47 -5.27 -0.02 0.96 16 28 H 0.08 0.73 4.53 -51.93 -0.24 0.50 16 29 H 0.06 0.47 7.01 -51.93 -0.36 0.10 16 30 H 0.06 0.62 6.23 -51.93 -0.32 0.30 16 31 H 0.05 0.52 6.95 -51.93 -0.36 0.16 16 32 H 0.08 1.11 8.07 -51.93 -0.42 0.69 16 33 H 0.06 0.66 6.01 -51.93 -0.31 0.35 16 34 H 0.03 0.65 7.13 -51.93 -0.37 0.28 16 35 H 0.04 0.90 6.85 -51.93 -0.36 0.54 16 36 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 37 H 0.04 0.34 7.23 -51.93 -0.38 -0.04 16 38 H 0.09 0.70 7.86 -51.93 -0.41 0.29 16 39 H 0.10 0.74 8.14 -51.92 -0.42 0.32 16 40 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 41 H 0.40 1.76 9.06 45.56 0.41 2.17 16 42 H 0.16 1.46 8.06 -52.48 -0.42 1.04 16 43 H 0.12 1.92 5.95 -51.93 -0.31 1.61 16 44 H 0.06 0.64 5.92 -51.93 -0.31 0.33 16 LS Contribution 347.60 15.07 5.24 5.24 Total: -1.00 -37.15 347.60 -6.32 -43.48 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -4.96 Total: 1.03 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: -1.74 Total: 2.89 kcal Atomic # 7 Polarization: -52.17 SS G_CDS: -0.02 Total: -52.19 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: -0.18 Total: -16.98 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.67 Total: 16.53 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -37.15 -6.32 -43.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647146070.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.495 kcal (2) G-P(sol) polarization free energy of solvation -37.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds