Wall clock time and date at job start Tue Mar 31 2020 12:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47065 * 2 1 4 4 C 1.50698 * 109.47476 * 240.00292 * 2 1 3 5 5 O 1.21281 * 120.00283 * 268.50347 * 4 2 1 6 6 N 1.34775 * 120.00196 * 88.49579 * 4 2 1 7 7 C 1.46507 * 119.99944 * 354.91431 * 6 4 2 8 8 C 1.46500 * 120.00398 * 174.91374 * 6 4 2 9 9 C 1.50699 * 109.47367 * 89.99915 * 8 6 4 10 10 H 1.08003 * 119.99908 * 0.02562 * 9 8 6 11 11 C 1.37872 * 120.00256 * 179.97438 * 9 8 6 12 12 N 1.31519 * 119.99934 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00212 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.46912 * 90.00350 * 13 11 9 15 15 H 1.48499 * 109.47217 * 210.00134 * 13 11 9 16 16 H 1.48503 * 109.47133 * 330.00277 * 13 11 9 17 17 N 1.46899 * 109.47222 * 120.00293 * 2 1 3 18 18 C 1.47143 * 111.00157 * 299.59392 * 17 2 1 19 19 C 1.52937 * 108.67141 * 165.30761 * 18 17 2 20 20 C 1.50682 * 109.85324 * 50.61459 * 19 18 17 21 21 N 1.32289 * 118.99439 * 163.12959 * 20 19 18 22 22 N 1.28211 * 122.43152 * 179.58230 * 21 20 19 23 23 C 1.32367 * 122.14024 * 0.03089 * 22 21 20 24 24 O 1.35692 * 120.22712 * 180.02562 * 23 22 21 25 25 C 1.39198 * 119.54312 * 0.07627 * 23 22 21 26 26 C 1.38132 * 121.38141 * 342.88864 * 20 19 18 27 27 C 1.46738 * 110.99989 * 176.53474 * 17 2 1 28 28 H 1.08999 * 109.47081 * 187.76988 * 1 2 3 29 29 H 1.09001 * 109.47404 * 307.76587 * 1 2 3 30 30 H 1.08996 * 109.47436 * 67.77156 * 1 2 3 31 31 H 1.09004 * 109.47031 * 91.47768 * 7 6 4 32 32 H 1.08999 * 109.47348 * 211.48389 * 7 6 4 33 33 H 1.09000 * 109.46617 * 331.47859 * 7 6 4 34 34 H 1.09004 * 109.47534 * 210.00339 * 8 6 4 35 35 H 1.09004 * 109.46905 * 330.00053 * 8 6 4 36 36 H 0.97003 * 119.99995 * 179.97438 * 12 11 9 37 37 H 1.08998 * 109.60118 * 285.07789 * 18 17 2 38 38 H 1.09001 * 109.59935 * 45.56182 * 18 17 2 39 39 H 1.08994 * 109.40806 * 290.49911 * 19 18 17 40 40 H 1.09004 * 109.34218 * 170.69177 * 19 18 17 41 41 H 0.96705 * 113.99700 * 270.01898 * 24 23 22 42 42 H 1.08005 * 121.03445 * 179.97438 * 25 23 22 43 43 H 1.09005 * 109.32650 * 295.83905 * 27 17 2 44 44 H 1.09007 * 109.32535 * 55.47813 * 27 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.2604 -1.9009 -1.1928 6 7 2.2282 -0.0226 -2.3729 7 6 1.8481 1.3901 -2.4518 8 6 2.8211 -0.6876 -3.5358 9 6 1.7286 -1.2893 -4.3816 10 1 0.6958 -1.1863 -4.0830 11 6 2.0474 -1.9704 -5.5372 12 7 3.3050 -2.0954 -5.9011 13 14 0.6931 -2.7156 -6.5860 14 1 0.2421 -1.7208 -7.5921 15 1 1.2116 -3.9216 -7.2802 16 1 -0.4510 -3.0968 -5.7194 17 7 2.0197 -0.6925 1.1994 18 6 1.5559 -0.0198 2.4231 19 6 1.7703 -0.9601 3.6100 20 6 3.1853 -1.4779 3.6035 21 7 3.6733 -2.0243 4.7051 22 7 4.8649 -2.4928 4.7706 23 6 5.6917 -2.4614 3.7374 24 8 6.9451 -2.9691 3.8498 25 6 5.2670 -1.9030 2.5352 26 6 3.9756 -1.3973 2.4735 27 6 3.4842 -0.7842 1.1926 28 1 -0.3633 -1.0182 0.1389 29 1 -0.3634 0.6294 0.8124 30 1 -0.3634 0.3887 -0.9512 31 1 2.6992 2.0115 -2.1732 32 1 1.5426 1.6278 -3.4707 33 1 1.0195 1.5820 -1.7700 34 1 3.3782 0.0402 -4.1258 35 1 3.4955 -1.4751 -3.1993 36 1 3.5293 -2.5750 -6.7140 37 1 2.1257 0.8969 2.5748 38 1 0.4958 0.2167 2.3309 39 1 1.0776 -1.7985 3.5377 40 1 1.5872 -0.4180 4.5378 41 1 7.6049 -2.3262 4.1440 42 1 5.9217 -1.8644 1.6771 43 1 3.8031 -1.4007 0.3521 44 1 3.9077 0.2148 1.0883 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647146071.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:13 Heat of formation + Delta-G solvation = 2.275516 kcal Electronic energy + Delta-G solvation = -27424.466351 eV Core-core repulsion = 23571.367572 eV Total energy + Delta-G solvation = -3853.098779 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.60713 -39.83755 -38.22617 -37.32981 -34.87949 -34.13062 -33.28683 -32.60645 -30.67286 -30.01818 -27.88368 -26.10604 -26.01245 -24.98021 -23.80457 -23.22747 -22.06592 -20.61462 -19.08996 -18.54346 -17.81037 -16.89404 -16.57225 -16.32718 -15.97744 -15.77109 -15.44089 -15.01864 -14.70931 -14.26652 -14.14696 -13.87690 -13.78894 -13.32477 -13.21121 -12.63782 -12.57603 -12.45057 -12.24750 -12.19204 -12.05488 -11.94919 -11.74070 -11.56761 -11.47934 -11.21428 -10.95141 -10.89101 -10.62649 -10.19211 -10.09329 -9.67778 -9.61854 -9.52458 -8.95187 -8.47671 -8.43787 -7.72362 -6.08598 -4.13226 0.55014 0.60855 3.04283 3.19336 3.27466 3.31441 3.35017 3.38562 3.46766 3.88907 4.02302 4.23168 4.26323 4.41288 4.63851 4.72217 4.88178 4.91925 4.96971 5.04489 5.12892 5.22077 5.26215 5.26802 5.40904 5.47761 5.53390 5.60945 5.70571 5.72465 5.75078 5.80186 5.83793 6.00448 6.08773 6.24825 6.71515 6.77793 7.00976 7.07796 7.34247 7.46262 7.87510 8.17863 8.31878 8.50470 8.85103 9.01672 9.52178 10.99527 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016354 B = 0.003286 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.670997 B = 8519.198637 C = 9478.612453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.065 3.935 3 H 0.060 0.940 4 C 0.505 3.495 5 O -0.518 6.518 6 N -0.603 5.603 7 C 0.080 3.920 8 C 0.248 3.752 9 C -0.525 4.525 10 H 0.057 0.943 11 C 0.061 3.939 12 N -0.896 5.896 13 Si 0.898 3.102 14 H -0.280 1.280 15 H -0.285 1.285 16 H -0.274 1.274 17 N -0.509 5.509 18 C 0.045 3.955 19 C -0.057 4.057 20 C 0.075 3.925 21 N -0.219 5.219 22 N -0.261 5.261 23 C 0.251 3.749 24 O -0.473 6.473 25 C -0.134 4.134 26 C -0.046 4.046 27 C 0.085 3.915 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.042 0.958 32 H 0.075 0.925 33 H 0.058 0.942 34 H 0.032 0.968 35 H 0.041 0.959 36 H 0.263 0.737 37 H 0.042 0.958 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.095 0.905 41 H 0.403 0.597 42 H 0.158 0.842 43 H 0.116 0.884 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.303 10.319 17.368 20.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.047 4.047 3 H 0.078 0.922 4 C 0.290 3.710 5 O -0.393 6.393 6 N -0.336 5.336 7 C -0.064 4.064 8 C 0.128 3.872 9 C -0.564 4.564 10 H 0.076 0.924 11 C -0.141 4.141 12 N -0.535 5.535 13 Si 0.725 3.275 14 H -0.207 1.207 15 H -0.211 1.211 16 H -0.198 1.198 17 N -0.234 5.234 18 C -0.083 4.083 19 C -0.096 4.096 20 C -0.069 4.069 21 N -0.064 5.064 22 N -0.113 5.113 23 C 0.066 3.934 24 O -0.278 6.278 25 C -0.164 4.164 26 C -0.057 4.057 27 C -0.043 4.043 28 H 0.095 0.905 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.061 0.939 32 H 0.094 0.906 33 H 0.077 0.923 34 H 0.050 0.950 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.060 0.940 38 H 0.116 0.884 39 H 0.119 0.881 40 H 0.113 0.887 41 H 0.261 0.739 42 H 0.175 0.825 43 H 0.134 0.866 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.020 8.135 18.562 20.267 hybrid contribution 0.341 1.146 -2.161 2.470 sum 0.321 9.281 16.401 18.848 Atomic orbital electron populations 1.21805 0.91850 1.03855 1.02340 1.21729 0.97660 0.95719 0.89570 0.92248 1.20054 0.79342 0.87652 0.83938 1.90698 1.50235 1.14302 1.84102 1.48205 1.61319 1.10472 1.13619 1.21701 0.98819 0.82705 1.03184 1.19280 0.93911 0.92922 0.81040 1.21408 0.93412 1.34835 1.06753 0.92433 1.24933 0.95639 0.95927 0.97598 1.69926 1.16647 1.42309 1.24571 0.86498 0.81998 0.78783 0.80174 1.20657 1.21071 1.19837 1.62058 1.08662 1.51648 1.01077 1.22345 1.02167 0.94778 0.89030 1.20407 0.89966 1.00367 0.98826 1.22584 0.98242 0.96052 0.90044 1.73039 1.04417 1.06177 1.22793 1.72794 0.99104 1.12967 1.26485 1.20744 0.88478 0.93525 0.90626 1.84820 1.14129 1.39598 1.89259 1.22475 0.97149 0.97058 0.99752 1.20611 0.92965 0.95796 0.96354 1.21115 0.88335 1.00000 0.94893 0.90548 0.91807 0.91099 0.93899 0.90591 0.92313 0.95002 0.94057 0.92699 0.93981 0.88447 0.88079 0.88660 0.73933 0.82480 0.86567 0.92440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 8.48 37.16 0.31 -1.32 16 2 C 0.06 0.87 1.60 -68.87 -0.11 0.76 16 3 H 0.06 0.67 6.93 -51.93 -0.36 0.31 16 4 C 0.51 9.69 5.84 -10.99 -0.06 9.63 16 5 O -0.52 -12.41 14.93 5.56 0.08 -12.33 16 6 N -0.60 -11.90 2.86 -182.95 -0.52 -12.42 16 7 C 0.08 1.15 9.80 59.85 0.59 1.74 16 8 C 0.25 6.21 5.13 -5.19 -0.03 6.18 16 9 C -0.53 -14.53 9.39 -34.44 -0.32 -14.85 16 10 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 11 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 12 N -0.90 -26.18 13.29 55.43 0.74 -25.44 16 13 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 14 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 15 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 16 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 17 N -0.51 -6.63 4.29 -229.70 -0.99 -7.61 16 18 C 0.05 0.42 5.41 -3.72 -0.02 0.40 16 19 C -0.06 -0.55 6.21 -27.92 -0.17 -0.72 16 20 C 0.08 0.95 6.73 -82.44 -0.56 0.39 16 21 N -0.22 -3.11 11.40 33.56 0.38 -2.73 16 22 N -0.26 -3.81 11.52 30.49 0.35 -3.46 16 23 C 0.25 3.17 7.86 -16.96 -0.13 3.03 16 24 O -0.47 -4.91 13.58 -18.78 -0.25 -5.16 16 25 C -0.13 -1.60 9.83 -39.01 -0.38 -1.99 16 26 C -0.05 -0.59 5.79 -104.65 -0.61 -1.19 16 27 C 0.08 1.11 4.78 -5.27 -0.03 1.08 16 28 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.06 0.52 6.54 -51.93 -0.34 0.18 16 30 H 0.07 0.84 7.00 -51.93 -0.36 0.47 16 31 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 1.14 8.08 -51.93 -0.42 0.72 16 33 H 0.06 0.67 5.36 -51.93 -0.28 0.39 16 34 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 35 H 0.04 1.17 7.50 -51.93 -0.39 0.78 16 36 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 37 H 0.04 0.34 8.05 -51.93 -0.42 -0.07 16 38 H 0.10 0.73 5.86 -51.93 -0.30 0.42 16 39 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.40 1.86 9.06 45.56 0.41 2.28 16 42 H 0.16 1.57 8.06 -52.48 -0.42 1.15 16 43 H 0.12 1.89 6.25 -51.93 -0.32 1.56 16 44 H 0.06 0.65 8.13 -51.93 -0.42 0.22 16 LS Contribution 358.63 15.07 5.40 5.40 Total: -1.00 -35.89 358.63 -6.73 -42.62 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -5.28 Total: -0.22 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: -1.62 Total: 4.76 kcal Atomic # 7 Polarization: -51.62 SS G_CDS: -0.04 Total: -51.66 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -0.17 Total: -17.49 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.89 -6.73 -42.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647146071.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.898 kcal (2) G-P(sol) polarization free energy of solvation -35.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds