Wall clock time and date at job start Tue Mar 31 2020 12:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47155 * 2 1 4 4 C 1.52998 * 109.47203 * 120.00034 * 2 1 3 5 5 C 1.50702 * 109.47153 * 295.00144 * 4 2 1 6 6 H 1.07999 * 119.99660 * 359.97438 * 5 4 2 7 7 C 1.37872 * 119.99967 * 180.02562 * 5 4 2 8 8 N 1.31517 * 120.00355 * 0.26486 * 7 5 4 9 9 Si 1.86804 * 119.99884 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46952 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47349 * 119.99622 * 9 7 5 12 12 H 1.48499 * 109.47025 * 239.99384 * 9 7 5 13 13 C 1.50699 * 109.46822 * 240.00112 * 2 1 3 14 14 N 1.30299 * 126.34717 * 300.02437 * 13 2 1 15 15 N 1.28529 * 110.05498 * 179.97438 * 14 13 2 16 16 C 1.31215 * 109.85775 * 0.02562 * 15 14 13 17 17 N 1.38585 * 126.46998 * 180.02562 * 16 15 14 18 18 C 1.46897 * 111.00132 * 62.19632 * 17 16 15 19 19 C 1.46896 * 110.99935 * 298.23802 * 17 16 15 20 20 C 1.53005 * 109.47243 * 190.00257 * 19 17 16 21 21 C 1.53002 * 109.47082 * 180.02562 * 20 19 17 22 22 F 1.39893 * 109.47263 * 60.00033 * 21 20 19 23 23 F 1.39899 * 109.46830 * 179.97438 * 21 20 19 24 24 F 1.39902 * 109.46829 * 299.99695 * 21 20 19 25 25 N 1.36449 * 107.05613 * 359.75587 * 16 15 14 26 26 C 1.46504 * 127.13938 * 180.24213 * 25 16 15 27 27 H 1.09000 * 109.46813 * 299.99982 * 1 2 3 28 28 H 1.08999 * 109.47167 * 59.99678 * 1 2 3 29 29 H 1.08998 * 109.47155 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47407 * 174.99568 * 4 2 1 31 31 H 1.09001 * 109.47058 * 54.99602 * 4 2 1 32 32 H 0.96997 * 119.99680 * 359.73680 * 8 7 5 33 33 H 1.09000 * 109.47427 * 54.09895 * 18 17 16 34 34 H 1.09003 * 109.46877 * 174.09543 * 18 17 16 35 35 H 1.08997 * 109.47089 * 294.09596 * 18 17 16 36 36 H 1.09006 * 109.47473 * 310.00142 * 19 17 16 37 37 H 1.08998 * 109.47321 * 70.00084 * 19 17 16 38 38 H 1.09000 * 109.46755 * 299.99873 * 20 19 17 39 39 H 1.08994 * 109.47032 * 60.00187 * 20 19 17 40 40 H 1.08997 * 109.47423 * 264.90609 * 26 25 16 41 41 H 1.09004 * 109.46923 * 24.90602 * 26 25 16 42 42 H 1.09001 * 109.47097 * 144.90222 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 0.0570 2.4766 6 1 1.0807 0.9745 2.3756 7 6 1.9933 -0.4017 3.7282 8 7 2.6814 -1.5158 3.8508 9 14 1.4997 0.5634 5.2496 10 1 0.7432 1.7750 4.8433 11 1 0.6459 -0.2854 6.1189 12 1 2.7180 0.9681 5.9959 13 6 2.0323 -0.7104 -1.2305 14 7 1.7946 -1.9489 -1.5583 15 7 2.3754 -2.2298 -2.6699 16 6 3.0205 -1.1772 -3.1142 17 7 3.7627 -1.0981 -4.2819 18 6 2.9163 -1.3279 -5.4603 19 6 4.8913 -2.0380 -4.2530 20 6 5.8235 -1.7520 -5.4321 21 6 6.9986 -2.7314 -5.4023 22 9 6.5165 -4.0413 -5.4961 23 9 7.8507 -2.4703 -6.4808 24 9 7.7029 -2.5783 -4.2032 25 7 2.8177 -0.1734 -2.2126 26 6 3.3361 1.1952 -2.2810 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 3.1263 -0.7995 1.2056 31 1 1.6054 -1.7198 1.2952 32 1 2.9381 -2.0167 3.0609 33 1 2.0696 -0.6417 -5.4389 34 1 3.4994 -1.1572 -6.3653 35 1 2.5519 -2.3551 -5.4512 36 1 5.4400 -1.9184 -3.3187 37 1 4.5160 -3.0587 -4.3258 38 1 5.2749 -1.8717 -6.3663 39 1 6.1988 -0.7314 -5.3593 40 1 4.2599 1.2630 -1.7065 41 1 3.5345 1.4570 -3.3203 42 1 2.5994 1.8838 -1.8671 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647687239.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:00 Heat of formation + Delta-G solvation = -83.924341 kcal Electronic energy + Delta-G solvation = -27425.039968 eV Core-core repulsion = 23026.346542 eV Total energy + Delta-G solvation = -4398.693426 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.42059 -47.93090 -47.87943 -42.78266 -38.22149 -35.55134 -34.64331 -32.88504 -32.19421 -28.87458 -27.54366 -27.14672 -26.65690 -24.99636 -24.01018 -22.54965 -21.98151 -20.69480 -19.41860 -18.86917 -18.70838 -17.99462 -16.92281 -16.72005 -16.39997 -16.02911 -15.43334 -14.96064 -14.76751 -14.66236 -14.40969 -14.29286 -14.03430 -14.02906 -13.76539 -13.62896 -13.50197 -13.27588 -12.90755 -12.68739 -12.42602 -12.32024 -12.10386 -11.88191 -11.65867 -11.43319 -11.22611 -10.99443 -10.82683 -10.53766 -10.19093 -10.13393 -9.95504 -9.88171 -9.07770 -8.76802 -8.50454 -8.33961 -6.37002 -4.07749 1.85803 2.17483 2.51081 3.10005 3.31921 3.42671 3.47003 3.56162 3.58930 3.68274 3.82381 4.38085 4.48642 4.51339 4.68680 4.78982 4.85408 4.89324 5.08263 5.12537 5.18342 5.28166 5.33312 5.40400 5.43988 5.51661 5.61857 5.88870 5.93788 6.08238 6.15231 6.25367 6.55907 6.63641 6.71191 6.91750 7.23568 7.30065 7.49014 8.12920 8.43451 8.84924 8.99601 9.64988 11.03410 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.018429 B = 0.002813 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.943811 B = 9951.717055 C =10724.361004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.004 3.996 3 H 0.075 0.925 4 C 0.025 3.975 5 C -0.601 4.601 6 H 0.053 0.947 7 C 0.016 3.984 8 N -0.911 5.911 9 Si 1.074 2.926 10 H -0.289 1.289 11 H -0.287 1.287 12 H -0.288 1.288 13 C 0.219 3.781 14 N -0.286 5.286 15 N -0.306 5.306 16 C 0.312 3.688 17 N -0.459 5.459 18 C 0.029 3.971 19 C 0.062 3.938 20 C -0.164 4.164 21 C 0.456 3.544 22 F -0.182 7.182 23 F -0.184 7.184 24 F -0.181 7.181 25 N -0.469 5.469 26 C 0.080 3.920 27 H 0.077 0.923 28 H 0.033 0.967 29 H 0.060 0.940 30 H 0.004 0.996 31 H 0.023 0.977 32 H 0.271 0.729 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.050 0.950 36 H 0.090 0.910 37 H 0.070 0.930 38 H 0.113 0.887 39 H 0.120 0.880 40 H 0.080 0.920 41 H 0.092 0.908 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.780 4.613 -22.458 23.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.017 4.017 3 H 0.093 0.907 4 C -0.013 4.013 5 C -0.640 4.640 6 H 0.072 0.928 7 C -0.188 4.188 8 N -0.546 5.546 9 Si 0.902 3.098 10 H -0.215 1.215 11 H -0.213 1.213 12 H -0.214 1.214 13 C -0.048 4.048 14 N -0.125 5.125 15 N -0.151 5.151 16 C -0.045 4.045 17 N -0.184 5.184 18 C -0.118 4.118 19 C -0.066 4.066 20 C -0.203 4.203 21 C 0.401 3.599 22 F -0.163 7.163 23 F -0.165 7.165 24 F -0.162 7.162 25 N -0.161 5.161 26 C -0.063 4.063 27 H 0.096 0.904 28 H 0.052 0.948 29 H 0.079 0.921 30 H 0.022 0.978 31 H 0.042 0.958 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.069 0.931 36 H 0.109 0.891 37 H 0.088 0.912 38 H 0.132 0.868 39 H 0.138 0.862 40 H 0.098 0.902 41 H 0.111 0.889 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.560 3.697 -20.800 21.845 hybrid contribution 0.540 0.467 -1.840 1.973 sum 6.100 4.164 -22.640 23.814 Atomic orbital electron populations 1.21674 0.93280 1.02562 1.00845 1.19873 0.96447 0.97581 0.87776 0.90661 1.19230 0.95379 0.96363 0.90292 1.21990 1.39588 1.10449 0.91934 0.92849 1.25822 0.94557 0.97088 1.01339 1.70697 1.35273 1.14816 1.33858 0.83481 0.76261 0.74991 0.75044 1.21489 1.21303 1.21430 1.25741 0.94043 0.91967 0.93090 1.74076 1.20234 1.11211 1.06992 1.74535 1.11107 1.22288 1.07149 1.21991 1.02769 0.86556 0.93135 1.58437 1.08833 1.52271 0.98830 1.22522 0.96812 1.01910 0.90566 1.22078 0.90765 0.95437 0.98279 1.22877 0.94185 1.00190 1.03023 1.20426 0.84580 0.81310 0.73574 1.93209 1.87800 1.39462 1.95850 1.93195 1.73319 1.93879 1.56132 1.93219 1.80912 1.95525 1.46573 1.46267 1.39496 1.12134 1.18223 1.22004 1.00686 0.79116 1.04474 0.90423 0.94825 0.92088 0.97766 0.95848 0.91846 0.90856 0.90054 0.93115 0.89106 0.91221 0.86824 0.86180 0.90153 0.88893 0.89316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.34 8.99 37.16 0.33 -2.00 16 2 C 0.00 0.09 2.71 -91.77 -0.25 -0.16 16 3 H 0.08 1.38 7.08 -51.93 -0.37 1.02 16 4 C 0.03 0.64 3.74 -27.88 -0.10 0.54 16 5 C -0.60 -16.31 8.41 -34.44 -0.29 -16.60 16 6 H 0.05 1.39 7.06 -52.49 -0.37 1.02 16 7 C 0.02 0.46 5.46 -17.82 -0.10 0.37 16 8 N -0.91 -27.88 13.65 55.43 0.76 -27.12 16 9 Si 1.07 24.82 29.90 -169.99 -5.08 19.73 16 10 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 12 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 13 C 0.22 4.22 6.58 -154.01 -1.01 3.21 16 14 N -0.29 -6.10 12.18 32.99 0.40 -5.70 16 15 N -0.31 -5.86 12.19 30.31 0.37 -5.49 16 16 C 0.31 4.84 6.38 -318.88 -2.04 2.81 16 17 N -0.46 -5.08 4.75 -182.38 -0.87 -5.95 16 18 C 0.03 0.26 9.21 60.06 0.55 0.81 16 19 C 0.06 0.63 4.63 -3.82 -0.02 0.61 16 20 C -0.16 -1.09 5.18 -26.73 -0.14 -1.23 16 21 C 0.46 3.92 3.16 37.16 0.12 4.04 16 22 F -0.18 -1.82 16.80 2.25 0.04 -1.78 16 23 F -0.18 -1.60 17.32 2.25 0.04 -1.56 16 24 F -0.18 -1.89 16.80 2.25 0.04 -1.85 16 25 N -0.47 -7.36 3.21 -121.45 -0.39 -7.75 16 26 C 0.08 0.88 10.81 59.85 0.65 1.52 16 27 H 0.08 1.47 6.95 -51.93 -0.36 1.11 16 28 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.00 0.11 8.00 -51.93 -0.42 -0.30 16 31 H 0.02 0.65 8.01 -51.93 -0.42 0.23 16 32 H 0.27 8.40 7.22 -40.82 -0.29 8.11 16 33 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 34 H 0.08 0.44 6.56 -51.93 -0.34 0.10 16 35 H 0.05 0.50 8.13 -51.93 -0.42 0.08 16 36 H 0.09 1.06 7.72 -51.93 -0.40 0.66 16 37 H 0.07 0.78 7.77 -51.93 -0.40 0.38 16 38 H 0.11 0.53 6.59 -51.93 -0.34 0.19 16 39 H 0.12 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.09 0.79 8.11 -51.93 -0.42 0.36 16 42 H 0.09 0.87 7.47 -51.93 -0.39 0.49 16 LS Contribution 360.72 15.07 5.44 5.44 Total: -1.00 -33.66 360.72 -7.41 -41.06 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: -5.85 Total: -2.93 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: -2.29 Total: -6.09 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: 0.27 Total: -52.02 kcal Atomic # 9 Polarization: -5.31 SS G_CDS: 0.11 Total: -5.19 kcal Atomic # 14 Polarization: 24.82 SS G_CDS: -5.08 Total: 19.73 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.66 -7.41 -41.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647687239.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.861 kcal (2) G-P(sol) polarization free energy of solvation -33.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds