Wall clock time and date at job start Tue Mar 31 2020 12:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 114.00029 * 2 1 4 4 C 1.52997 * 109.47346 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47419 * 176.19823 * 4 3 2 6 6 C 1.37731 * 127.18176 * 84.83089 * 5 4 3 7 7 C 1.47131 * 126.50771 * 359.97438 * 6 5 4 8 8 C 1.36252 * 125.96464 * 194.71764 * 7 6 5 9 9 C 1.40819 * 106.72722 * 180.02562 * 8 7 6 10 10 C 1.34788 * 107.07624 * 359.97438 * 9 8 7 11 11 O 1.34328 * 108.71774 * 0.24286 * 10 9 8 12 12 N 1.31511 * 106.98722 * 179.73656 * 6 5 4 13 13 N 1.28502 * 109.91999 * 0.25759 * 12 6 5 14 14 C 1.31325 * 110.15450 * 0.02562 * 13 12 6 15 15 N 1.38453 * 126.34945 * 180.02562 * 14 13 12 16 16 C 1.46908 * 110.99643 * 306.57301 * 15 14 13 17 17 C 1.46900 * 111.00618 * 70.52450 * 15 14 13 18 18 H 1.09006 * 109.46782 * 55.00010 * 17 15 14 19 19 C 1.52996 * 109.47192 * 295.00508 * 17 15 14 20 20 C 1.50702 * 109.47259 * 175.00075 * 17 15 14 21 21 H 1.07993 * 120.00211 * 0.02562 * 20 17 15 22 22 C 1.37875 * 119.99810 * 180.02562 * 20 17 15 23 23 N 1.31520 * 120.00038 * 0.02562 * 22 20 17 24 24 Si 1.86794 * 120.00003 * 180.02562 * 22 20 17 25 25 H 1.48501 * 109.47113 * 359.97438 * 24 22 20 26 26 H 1.48492 * 109.47500 * 119.99889 * 24 22 20 27 27 H 1.48505 * 109.47016 * 239.99953 * 24 22 20 28 28 H 1.08992 * 109.47173 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47115 * 300.00254 * 1 2 3 30 30 H 1.09001 * 109.47191 * 59.99845 * 1 2 3 31 31 H 1.09002 * 109.47180 * 59.99809 * 3 2 1 32 32 H 1.09007 * 109.47500 * 300.00257 * 3 2 1 33 33 H 1.09003 * 109.47025 * 56.20082 * 4 3 2 34 34 H 1.08998 * 109.47403 * 296.20098 * 4 3 2 35 35 H 1.08001 * 126.63684 * 0.02562 * 8 7 6 36 36 H 1.08003 * 126.46781 * 180.02562 * 9 8 7 37 37 H 1.08000 * 125.64424 * 179.97438 * 10 9 8 38 38 H 1.08997 * 109.46896 * 54.46451 * 16 15 14 39 39 H 1.09003 * 109.47233 * 174.46653 * 16 15 14 40 40 H 1.08997 * 109.47099 * 294.46206 * 16 15 14 41 41 H 1.09004 * 109.47118 * 299.99927 * 19 17 15 42 42 H 1.08999 * 109.47517 * 59.99329 * 19 17 15 43 43 H 1.09002 * 109.47113 * 179.97438 * 19 17 15 44 44 H 0.96999 * 119.99546 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.1311 2.5199 -0.0909 6 6 4.3845 3.3912 0.9453 7 6 4.1066 3.1597 2.3714 8 6 4.0937 4.1091 3.3486 9 6 3.7850 3.4473 4.5526 10 6 3.6254 2.1419 4.2572 11 8 3.8252 1.9706 2.9399 12 7 4.9268 4.4673 0.4185 13 7 5.0222 4.3306 -0.8556 14 6 4.5477 3.1622 -1.2222 15 7 4.4877 2.6697 -2.5147 16 6 3.8053 3.6160 -3.4075 17 6 5.8294 2.3457 -3.0176 18 1 6.3194 1.6579 -2.3283 19 6 6.6552 3.6287 -3.1309 20 6 5.7150 1.7004 -4.3746 21 1 4.7429 1.5467 -4.8193 22 6 6.8514 1.3061 -5.0485 23 7 8.0352 1.4928 -4.5068 24 14 6.7097 0.5069 -6.7309 25 1 5.2782 0.4109 -7.1143 26 1 7.4367 1.3281 -7.7319 27 1 7.3013 -0.8544 -6.6836 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8465 -0.8900 33 1 3.8529 0.5859 -0.8531 34 1 3.8615 0.7039 0.9229 35 1 4.2836 5.1649 3.2238 36 1 3.6925 3.9003 5.5287 37 1 3.3819 1.3620 4.9634 38 1 4.2901 4.5901 -3.3433 39 1 3.8582 3.2507 -4.4331 40 1 2.7613 3.7093 -3.1084 41 1 6.1652 4.3165 -3.8201 42 1 6.7379 4.0955 -2.1494 43 1 7.6509 3.3882 -3.5036 44 1 8.8347 1.2158 -4.9811 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649014298.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:55 Heat of formation + Delta-G solvation = 76.980756 kcal Electronic energy + Delta-G solvation = -27861.720491 eV Core-core repulsion = 24011.861174 eV Total energy + Delta-G solvation = -3849.859317 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.89677 -42.32591 -38.13618 -37.32078 -35.02096 -33.27745 -32.91099 -31.25029 -29.88035 -28.90287 -27.97593 -26.51415 -25.39766 -25.22942 -23.77153 -22.85081 -22.02479 -21.18479 -20.37436 -19.48523 -17.95679 -17.00710 -16.63124 -16.32745 -16.15811 -15.93967 -15.80297 -15.25750 -15.15650 -14.91182 -14.47484 -13.67302 -13.57295 -13.16812 -13.08728 -12.98564 -12.74221 -12.43893 -12.34767 -11.73535 -11.66287 -11.47811 -11.33075 -11.28621 -10.96753 -10.85896 -10.63820 -10.39439 -10.24813 -10.16263 -10.06105 -9.93047 -9.87318 -9.47466 -8.95224 -8.49216 -8.09080 -7.76108 -6.10378 -4.16948 1.00568 2.09391 2.25085 2.50727 2.68219 3.25693 3.26423 3.33917 3.37291 3.65123 4.28829 4.37544 4.57654 4.68339 4.81719 4.83152 4.89725 5.11135 5.17446 5.19881 5.21971 5.27262 5.46727 5.47335 5.50197 5.66534 5.70428 5.78323 5.89003 6.03047 6.24566 6.29120 6.31376 6.54187 6.73528 6.81746 6.88598 6.92394 6.99649 7.10297 7.42494 7.57255 7.70211 7.85421 8.20324 8.37582 8.86180 8.96066 9.48136 10.96446 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014100 B = 0.004016 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.297294 B = 6971.020074 C = 8090.456855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.383 6.383 3 C 0.057 3.943 4 C 0.115 3.885 5 N -0.462 5.462 6 C 0.221 3.779 7 C 0.062 3.938 8 C -0.152 4.152 9 C -0.212 4.212 10 C -0.028 4.028 11 O -0.173 6.173 12 N -0.253 5.253 13 N -0.303 5.303 14 C 0.396 3.604 15 N -0.471 5.471 16 C 0.044 3.956 17 C 0.223 3.777 18 H 0.038 0.962 19 C -0.173 4.173 20 C -0.508 4.508 21 H 0.068 0.932 22 C 0.063 3.937 23 N -0.888 5.888 24 Si 0.901 3.099 25 H -0.272 1.272 26 H -0.284 1.284 27 H -0.284 1.284 28 H 0.089 0.911 29 H 0.040 0.960 30 H 0.044 0.956 31 H 0.050 0.950 32 H 0.060 0.940 33 H 0.120 0.880 34 H 0.100 0.900 35 H 0.160 0.840 36 H 0.155 0.845 37 H 0.208 0.792 38 H 0.043 0.957 39 H 0.094 0.906 40 H 0.044 0.956 41 H 0.033 0.967 42 H 0.032 0.968 43 H 0.088 0.912 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.215 -0.306 14.986 19.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.301 6.301 3 C -0.020 4.020 4 C -0.008 4.008 5 N -0.156 5.156 6 C -0.041 4.041 7 C 0.010 3.990 8 C -0.174 4.174 9 C -0.231 4.231 10 C -0.097 4.097 11 O -0.068 6.068 12 N -0.097 5.097 13 N -0.148 5.148 14 C 0.042 3.958 15 N -0.197 5.197 16 C -0.103 4.103 17 C 0.119 3.881 18 H 0.056 0.944 19 C -0.232 4.232 20 C -0.547 4.547 21 H 0.086 0.914 22 C -0.140 4.140 23 N -0.526 5.526 24 Si 0.729 3.271 25 H -0.196 1.196 26 H -0.210 1.210 27 H -0.210 1.210 28 H 0.107 0.893 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.139 0.861 34 H 0.118 0.882 35 H 0.177 0.823 36 H 0.172 0.828 37 H 0.224 0.776 38 H 0.061 0.939 39 H 0.112 0.888 40 H 0.063 0.937 41 H 0.052 0.948 42 H 0.051 0.949 43 H 0.106 0.894 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.588 0.087 14.631 19.301 hybrid contribution -0.275 -0.796 -0.617 1.044 sum -12.863 -0.709 14.013 19.035 Atomic orbital electron populations 1.22756 0.80423 1.02930 1.00110 1.87817 1.20124 1.26696 1.95488 1.22643 0.92932 0.85426 1.01040 1.21578 0.92041 0.80673 1.06511 1.46340 1.46908 1.15632 1.06728 1.20926 1.07145 0.90097 0.85953 1.18363 1.08268 0.83719 0.88649 1.21795 1.04214 1.00669 0.90690 1.21787 1.07708 0.93812 0.99769 1.24189 1.04955 0.98841 0.81709 1.84096 1.68820 1.31945 1.21946 1.74436 1.14601 1.18287 1.02353 1.74858 1.20091 1.16203 1.03660 1.22950 0.95584 0.88192 0.89069 1.59455 1.25028 1.40661 0.94597 1.22279 0.95856 0.94367 0.97805 1.19470 0.79239 0.93665 0.95764 0.94440 1.22448 1.04128 0.97647 0.99028 1.21016 0.93266 1.39414 1.00980 0.91432 1.24912 0.95122 0.95725 0.98202 1.69920 0.97607 1.46869 1.38194 0.86388 0.78238 0.78944 0.83531 1.19626 1.20988 1.20996 0.89265 0.94153 0.93766 0.93163 0.92164 0.86149 0.88181 0.82258 0.82777 0.77586 0.93860 0.88766 0.93708 0.94772 0.94880 0.89376 0.92781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.44 16 2 O -0.38 -5.02 10.70 -35.23 -0.38 -5.40 16 3 C 0.06 0.77 6.26 37.16 0.23 1.00 16 4 C 0.12 1.77 6.23 -4.04 -0.03 1.74 16 5 N -0.46 -8.34 2.84 -114.80 -0.33 -8.67 16 6 C 0.22 3.95 7.89 -153.73 -1.21 2.74 16 7 C 0.06 0.91 7.07 -36.69 -0.26 0.65 16 8 C -0.15 -1.88 10.84 -39.32 -0.43 -2.31 16 9 C -0.21 -2.00 10.88 -39.83 -0.43 -2.44 16 10 C -0.03 -0.26 12.08 29.51 0.36 0.10 16 11 O -0.17 -2.21 9.17 4.35 0.04 -2.17 16 12 N -0.25 -5.10 12.22 32.49 0.40 -4.70 16 13 N -0.30 -6.60 9.68 30.33 0.29 -6.31 16 14 C 0.40 8.23 6.21 -318.73 -1.98 6.25 16 15 N -0.47 -10.12 4.74 -176.04 -0.83 -10.96 16 16 C 0.04 0.86 8.65 60.07 0.52 1.38 16 17 C 0.22 5.57 2.31 -68.87 -0.16 5.41 16 18 H 0.04 1.05 8.11 -51.93 -0.42 0.63 16 19 C -0.17 -4.35 8.20 37.16 0.30 -4.05 16 20 C -0.51 -13.29 7.80 -34.44 -0.27 -13.56 16 21 H 0.07 1.73 6.81 -52.49 -0.36 1.37 16 22 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 23 N -0.89 -24.85 11.32 55.43 0.63 -24.23 16 24 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 25 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 27 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 28 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.12 2.01 8.11 -51.93 -0.42 1.59 16 34 H 0.10 1.42 6.85 -51.93 -0.36 1.06 16 35 H 0.16 1.86 8.06 -52.49 -0.42 1.43 16 36 H 0.15 1.01 8.06 -52.48 -0.42 0.59 16 37 H 0.21 1.00 8.06 -52.49 -0.42 0.58 16 38 H 0.04 0.86 6.54 -51.93 -0.34 0.52 16 39 H 0.09 1.86 6.29 -51.93 -0.33 1.53 16 40 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.03 0.82 6.60 -51.93 -0.34 0.48 16 42 H 0.03 0.82 5.94 -51.93 -0.31 0.51 16 43 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 44 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 364.95 15.07 5.50 5.50 Total: -1.00 -30.95 364.95 -8.16 -39.11 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -6.13 Total: 2.23 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: -2.33 Total: -0.06 kcal Atomic # 7 Polarization: -55.02 SS G_CDS: 0.16 Total: -54.86 kcal Atomic # 8 Polarization: -7.23 SS G_CDS: -0.34 Total: -7.56 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.95 -8.16 -39.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649014298.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.093 kcal (2) G-P(sol) polarization free energy of solvation -30.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds