Wall clock time and date at job start Tue Mar 31 2020 12:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42896 * 114.00584 * 2 1 4 4 C 1.53000 * 109.47648 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.47242 * 179.97438 * 4 3 2 6 6 C 1.37736 * 127.18834 * 275.58518 * 5 4 3 7 7 C 1.47138 * 126.49989 * 0.02562 * 6 5 4 8 8 C 1.36247 * 125.95951 * 164.71641 * 7 6 5 9 9 C 1.40831 * 106.72729 * 179.88267 * 8 7 6 10 10 C 1.34788 * 107.06887 * 0.37273 * 9 8 7 11 11 O 1.34324 * 108.72348 * 359.76751 * 10 9 8 12 12 N 1.31498 * 106.99346 * 179.97438 * 6 5 4 13 13 N 1.28507 * 109.92401 * 0.02562 * 12 6 5 14 14 C 1.31334 * 110.14983 * 0.02562 * 13 12 6 15 15 N 1.38452 * 126.35007 * 180.02562 * 14 13 12 16 16 C 1.46896 * 111.00277 * 294.14622 * 15 14 13 17 17 C 1.46909 * 110.99779 * 58.10246 * 15 14 13 18 18 H 1.09001 * 109.46870 * 300.00014 * 17 15 14 19 19 C 1.53001 * 109.46852 * 59.99735 * 17 15 14 20 20 C 1.50697 * 109.46938 * 179.97438 * 17 15 14 21 21 H 1.07999 * 119.99897 * 359.97438 * 20 17 15 22 22 C 1.37878 * 119.99624 * 179.97438 * 20 17 15 23 23 N 1.31513 * 120.00449 * 359.97438 * 22 20 17 24 24 Si 1.86807 * 119.99739 * 179.97438 * 22 20 17 25 25 H 1.48496 * 109.46988 * 60.00360 * 24 22 20 26 26 H 1.48505 * 109.46970 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.46997 * 299.99828 * 24 22 20 28 28 H 1.09003 * 109.47383 * 300.00798 * 1 2 3 29 29 H 1.09010 * 109.47001 * 60.00275 * 1 2 3 30 30 H 1.08995 * 109.47396 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47262 * 59.98995 * 3 2 1 32 32 H 1.09007 * 109.46731 * 299.99608 * 3 2 1 33 33 H 1.09000 * 109.47010 * 59.99425 * 4 3 2 34 34 H 1.09000 * 109.46951 * 300.00084 * 4 3 2 35 35 H 1.08003 * 126.63886 * 359.97438 * 8 7 6 36 36 H 1.07995 * 126.46364 * 180.13637 * 9 8 7 37 37 H 1.07997 * 125.63855 * 179.74426 * 10 9 8 38 38 H 1.09002 * 109.46972 * 65.45922 * 16 15 14 39 39 H 1.08997 * 109.47216 * 185.45856 * 16 15 14 40 40 H 1.08995 * 109.47068 * 305.45755 * 16 15 14 41 41 H 1.09009 * 109.46611 * 179.97438 * 19 17 15 42 42 H 1.08997 * 109.47479 * 299.99928 * 19 17 15 43 43 H 1.09001 * 109.47155 * 60.00454 * 19 17 15 44 44 H 0.97000 * 120.00507 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 4.1314 2.5228 0.0000 6 6 4.3729 3.3261 -1.0925 7 6 4.0793 3.0038 -2.4978 8 6 4.0445 3.8906 -3.5315 9 6 3.7293 3.1522 -4.6886 10 6 3.5803 1.8673 -4.3095 11 8 3.7923 1.7809 -2.9859 12 7 4.9146 4.4361 -0.6411 13 7 5.0261 4.3804 0.6379 14 6 4.5643 3.2342 1.0828 15 7 4.5223 2.8238 2.4044 16 6 5.8770 2.6478 2.9445 17 6 3.7471 3.7653 3.2236 18 1 4.2089 4.7517 3.1784 19 6 2.3157 3.8472 2.6894 20 6 3.7231 3.2863 4.6522 21 1 4.2323 2.3736 4.9243 22 6 3.0510 4.0133 5.6118 23 7 2.4314 5.1250 5.2805 24 14 3.0206 3.4192 7.3826 25 1 4.4096 3.3381 7.9014 26 1 2.2371 4.3710 8.2106 27 1 2.3902 2.0760 7.4432 28 1 -0.3634 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6886 1.8464 0.8899 32 1 1.6887 1.8463 -0.8901 33 1 3.8575 0.6434 -0.8891 34 1 3.8567 0.6438 0.8909 35 1 4.2252 4.9539 -3.4750 36 1 3.6229 3.5425 -5.6899 37 1 3.3313 1.0436 -4.9620 38 1 6.3825 3.6130 2.9792 39 1 5.8160 2.2332 3.9506 40 1 6.4377 1.9668 2.3043 41 1 1.7405 4.5455 3.2975 42 1 2.3328 4.1935 1.6560 43 1 1.8540 2.8609 2.7346 44 1 1.9583 5.6363 5.9555 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649014299.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:58 Heat of formation + Delta-G solvation = 72.692675 kcal Electronic energy + Delta-G solvation = -28067.416042 eV Core-core repulsion = 24217.370780 eV Total energy + Delta-G solvation = -3850.045262 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.89721 -42.32300 -38.04404 -37.13640 -34.98755 -33.28561 -32.97958 -31.23727 -29.87857 -29.32743 -28.14100 -26.43243 -25.64447 -24.44295 -23.68561 -22.93808 -21.99702 -21.40398 -20.36159 -19.48681 -17.91341 -17.07216 -16.52193 -16.43583 -16.15697 -15.99300 -15.63257 -15.29982 -15.07898 -14.75292 -14.53350 -13.73544 -13.52537 -13.27468 -13.10982 -12.96420 -12.73455 -12.43682 -12.36887 -11.90343 -11.64714 -11.51032 -11.31114 -11.17223 -11.01569 -10.83767 -10.47931 -10.38836 -10.27497 -10.21400 -10.15479 -9.99992 -9.72687 -9.47636 -9.17230 -8.56705 -8.02235 -7.82323 -6.11898 -4.18928 1.00650 2.08395 2.25802 2.51655 2.69224 3.26272 3.27181 3.32056 3.33871 3.70984 4.27223 4.37116 4.56073 4.68180 4.83092 4.89480 4.91884 5.19377 5.20534 5.25935 5.31035 5.33372 5.50948 5.54667 5.57131 5.66721 5.68779 5.76874 5.89189 6.01619 6.22209 6.26943 6.30954 6.53722 6.64219 6.70938 6.85262 6.87587 6.95847 7.02049 7.28772 7.54262 7.67153 7.82929 8.10516 8.35414 8.83766 8.96241 9.46171 10.94978 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015781 B = 0.004064 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.819019 B = 6888.498004 C = 7886.398030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.386 6.386 3 C 0.050 3.950 4 C 0.119 3.881 5 N -0.462 5.462 6 C 0.222 3.778 7 C 0.062 3.938 8 C -0.151 4.151 9 C -0.211 4.211 10 C -0.029 4.029 11 O -0.173 6.173 12 N -0.250 5.250 13 N -0.308 5.308 14 C 0.401 3.599 15 N -0.474 5.474 16 C 0.049 3.951 17 C 0.226 3.774 18 H 0.025 0.975 19 C -0.132 4.132 20 C -0.513 4.513 21 H 0.067 0.933 22 C 0.064 3.936 23 N -0.888 5.888 24 Si 0.902 3.098 25 H -0.276 1.276 26 H -0.287 1.287 27 H -0.276 1.276 28 H 0.046 0.954 29 H 0.040 0.960 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.049 0.951 33 H 0.098 0.902 34 H 0.116 0.884 35 H 0.160 0.840 36 H 0.155 0.845 37 H 0.207 0.793 38 H 0.038 0.962 39 H 0.093 0.907 40 H 0.045 0.955 41 H 0.094 0.906 42 H 0.001 0.999 43 H 0.033 0.967 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.161 -9.047 -16.606 18.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.304 6.304 3 C -0.027 4.027 4 C -0.004 4.004 5 N -0.157 5.157 6 C -0.041 4.041 7 C 0.010 3.990 8 C -0.173 4.173 9 C -0.230 4.230 10 C -0.097 4.097 11 O -0.068 6.068 12 N -0.094 5.094 13 N -0.152 5.152 14 C 0.047 3.953 15 N -0.202 5.202 16 C -0.098 4.098 17 C 0.122 3.878 18 H 0.042 0.958 19 C -0.190 4.190 20 C -0.552 4.552 21 H 0.085 0.915 22 C -0.138 4.138 23 N -0.526 5.526 24 Si 0.729 3.271 25 H -0.201 1.201 26 H -0.213 1.213 27 H -0.202 1.202 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.106 0.894 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.116 0.884 34 H 0.134 0.866 35 H 0.178 0.822 36 H 0.172 0.828 37 H 0.224 0.776 38 H 0.056 0.944 39 H 0.111 0.889 40 H 0.064 0.936 41 H 0.112 0.888 42 H 0.020 0.980 43 H 0.052 0.948 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.820 -8.441 -16.243 18.323 hybrid contribution -0.663 -0.525 0.714 1.107 sum -1.483 -8.966 -15.529 17.993 Atomic orbital electron populations 1.22757 0.80329 1.02781 1.00371 1.87756 1.20247 1.26823 1.95574 1.22759 0.92717 0.85462 1.01791 1.21521 0.92478 0.80304 1.06106 1.46394 1.46744 1.16078 1.06487 1.20929 1.07108 0.91032 0.85041 1.18353 1.08221 0.83143 0.89330 1.21816 1.04062 1.00969 0.90459 1.21793 1.07682 0.93371 1.00183 1.24179 1.04959 0.99583 0.81017 1.84088 1.68637 1.30790 1.23310 1.74436 1.14826 1.16209 1.03968 1.74812 1.21829 1.16607 1.01994 1.22869 0.95495 0.87258 0.89683 1.59294 1.16332 1.50183 0.94368 1.22240 0.86218 1.00407 1.00965 1.19460 0.89157 0.88949 0.90274 0.95773 1.21867 0.99741 1.00816 0.96566 1.20995 1.34004 1.09247 0.90929 0.91477 1.24905 0.95032 0.94752 0.99161 1.69880 1.33773 1.14847 1.34078 0.86503 0.78237 0.78489 0.83859 1.20101 1.21261 1.20167 0.93492 0.94181 0.89365 0.91158 0.93275 0.88352 0.86622 0.82231 0.82767 0.77594 0.94363 0.88882 0.93622 0.88790 0.98041 0.94831 0.92611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 101.05 1.11 1.48 16 2 O -0.39 -5.39 10.70 -35.23 -0.38 -5.76 16 3 C 0.05 0.75 6.26 37.16 0.23 0.98 16 4 C 0.12 1.80 6.22 -4.04 -0.03 1.78 16 5 N -0.46 -8.31 2.84 -114.79 -0.33 -8.64 16 6 C 0.22 3.97 7.89 -153.73 -1.21 2.76 16 7 C 0.06 0.91 7.07 -36.69 -0.26 0.65 16 8 C -0.15 -1.90 10.84 -39.32 -0.43 -2.33 16 9 C -0.21 -2.01 10.88 -39.82 -0.43 -2.45 16 10 C -0.03 -0.26 12.08 29.51 0.36 0.10 16 11 O -0.17 -2.18 9.19 4.36 0.04 -2.14 16 12 N -0.25 -5.13 12.22 32.49 0.40 -4.73 16 13 N -0.31 -6.90 12.08 30.34 0.37 -6.53 16 14 C 0.40 8.37 5.03 -318.71 -1.60 6.77 16 15 N -0.47 -10.20 4.62 -176.05 -0.81 -11.01 16 16 C 0.05 0.95 9.15 60.06 0.55 1.50 16 17 C 0.23 5.63 1.99 -68.86 -0.14 5.50 16 18 H 0.02 0.70 8.06 -51.93 -0.42 0.28 16 19 C -0.13 -3.22 8.55 37.16 0.32 -2.90 16 20 C -0.51 -13.38 7.94 -34.44 -0.27 -13.65 16 21 H 0.07 1.69 6.40 -52.49 -0.34 1.36 16 22 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 23 N -0.89 -24.69 11.32 55.43 0.63 -24.06 16 24 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 25 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 27 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.04 0.39 8.14 -51.92 -0.42 -0.04 16 30 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 1.20 6.84 -51.93 -0.36 0.85 16 32 H 0.05 0.71 8.14 -51.92 -0.42 0.29 16 33 H 0.10 1.32 6.87 -51.93 -0.36 0.96 16 34 H 0.12 1.77 8.10 -51.93 -0.42 1.35 16 35 H 0.16 1.92 8.06 -52.48 -0.42 1.50 16 36 H 0.15 1.03 8.06 -52.49 -0.42 0.60 16 37 H 0.21 0.97 8.06 -52.49 -0.42 0.55 16 38 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.09 1.78 6.29 -51.93 -0.33 1.45 16 40 H 0.04 0.77 8.11 -51.93 -0.42 0.35 16 41 H 0.09 2.51 6.07 -51.92 -0.32 2.20 16 42 H 0.00 0.01 7.22 -51.93 -0.38 -0.36 16 43 H 0.03 0.78 7.16 -51.93 -0.37 0.41 16 44 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 368.37 15.07 5.55 5.55 Total: -1.00 -30.91 368.37 -7.67 -38.57 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -6.21 Total: 1.46 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: -1.90 Total: 1.78 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: 0.25 Total: -54.97 kcal Atomic # 8 Polarization: -7.57 SS G_CDS: -0.34 Total: -7.90 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.91 -7.67 -38.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649014299.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.267 kcal (2) G-P(sol) polarization free energy of solvation -30.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds