Wall clock time and date at job start Tue Mar 31 2020 14:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40296 * 126.01259 * 2 1 4 4 C 1.30161 * 108.30235 * 180.23193 * 3 2 1 5 5 C 1.40386 * 108.31382 * 359.84256 * 4 3 2 6 6 C 1.35342 * 107.97145 * 359.88118 * 5 4 3 7 7 N 1.39504 * 126.28488 * 180.09710 * 6 5 4 8 8 C 1.34774 * 120.00295 * 134.81001 * 7 6 5 9 9 O 1.21591 * 120.00027 * 5.28804 * 8 7 6 10 10 N 1.34776 * 119.99960 * 185.28801 * 8 7 6 11 11 C 1.47587 * 134.49147 * 180.02562 * 10 8 7 12 12 C 1.53943 * 86.11802 * 155.35421 * 11 10 8 13 13 O 1.42896 * 113.74280 * 269.15240 * 12 11 10 14 14 C 1.50699 * 113.74095 * 137.94825 * 12 11 10 15 15 H 1.08000 * 120.00167 * 17.03484 * 14 12 11 16 16 C 1.37877 * 119.99824 * 197.02751 * 14 12 11 17 17 N 1.31515 * 119.99637 * 188.63626 * 16 14 12 18 18 Si 1.86799 * 120.00166 * 8.63877 * 16 14 12 19 19 H 1.48506 * 109.47059 * 180.02562 * 18 16 14 20 20 H 1.48499 * 109.47121 * 299.99590 * 18 16 14 21 21 H 1.48498 * 109.47167 * 59.99833 * 18 16 14 22 22 C 1.47808 * 134.45737 * 359.86648 * 10 8 7 23 23 C 1.50863 * 123.68895 * 179.71761 * 5 4 3 24 24 C 1.53388 * 108.19678 * 343.57112 * 23 5 4 25 25 C 1.53032 * 109.70083 * 50.48540 * 24 23 5 26 26 C 1.50968 * 128.22755 * 180.02562 * 4 3 2 27 27 H 1.08999 * 109.46592 * 273.44561 * 1 2 3 28 28 H 1.08998 * 109.47368 * 33.44052 * 1 2 3 29 29 H 1.08997 * 109.47260 * 153.44704 * 1 2 3 30 30 H 0.96995 * 119.99678 * 314.81364 * 7 6 5 31 31 H 1.08997 * 113.76553 * 41.05205 * 11 10 8 32 32 H 1.09002 * 113.76494 * 269.65948 * 11 10 8 33 33 H 0.96705 * 114.00270 * 174.28952 * 13 12 11 34 34 H 0.97004 * 120.00647 * 354.90047 * 17 16 14 35 35 H 1.09001 * 113.77121 * 90.38178 * 22 10 8 36 36 H 1.08998 * 113.83518 * 318.91876 * 22 10 8 37 37 H 1.09000 * 109.71859 * 103.25011 * 23 5 4 38 38 H 1.08999 * 109.72073 * 223.89903 * 23 5 4 39 39 H 1.08996 * 109.43233 * 290.41371 * 24 23 5 40 40 H 1.09000 * 109.39594 * 170.52966 * 24 23 5 41 41 H 1.09000 * 109.42636 * 168.20264 * 25 24 23 42 42 H 1.08995 * 109.38090 * 48.33910 * 25 24 23 43 43 H 1.08991 * 109.71794 * 282.91624 * 26 4 3 44 44 H 1.09008 * 109.71461 * 43.52203 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2899 1.1348 0.0000 4 6 3.5298 0.7389 -0.0050 5 6 3.5446 -0.6649 -0.0047 6 6 2.2617 -1.0960 0.0033 7 7 1.8374 -2.4250 0.0082 8 6 0.8535 -2.8152 0.8425 9 8 0.2700 -1.9923 1.5214 10 7 0.5163 -4.1175 0.9244 11 6 -0.4781 -4.8816 1.7025 12 6 -0.4025 -5.9270 0.5750 13 8 -1.3536 -5.7156 -0.4703 14 6 -0.3784 -7.3507 1.0683 15 1 -0.6851 -7.5774 2.0787 16 6 0.0351 -8.3639 0.2297 17 7 -0.1028 -9.6191 0.5972 18 14 0.7913 -7.9539 -1.4285 19 1 1.1488 -9.2108 -2.1340 20 1 -0.1874 -7.1905 -2.2437 21 1 2.0131 -7.1345 -1.2263 22 6 0.9927 -5.3534 0.2683 23 6 4.8086 -1.4884 -0.0159 24 6 5.9691 -0.5790 -0.4388 25 6 5.9602 0.6960 0.4075 26 6 4.7805 1.5845 -0.0066 27 1 -0.3632 0.0618 1.0258 28 1 -0.3634 0.8575 -0.5663 29 1 -0.3633 -0.9192 -0.4594 30 1 2.2505 -3.0681 -0.5889 31 1 -1.4473 -4.3890 1.7806 32 1 -0.1038 -5.2412 2.6610 33 1 -1.2528 -6.3165 -1.2213 34 1 -0.4264 -9.8314 1.4867 35 1 1.8003 -5.8521 0.8043 36 1 1.1954 -5.2369 -0.7963 37 1 4.9973 -1.8859 0.9813 38 1 4.7067 -2.3089 -0.7262 39 1 5.8594 -0.3166 -1.4910 40 1 6.9127 -1.1046 -0.2926 41 1 6.8933 1.2385 0.2555 42 1 5.8623 0.4308 1.4601 43 1 4.9535 1.9832 -1.0060 44 1 4.6705 2.4049 0.7028 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649969928.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:33 Heat of formation + Delta-G solvation = 41.350262 kcal Electronic energy + Delta-G solvation = -27719.920422 eV Core-core repulsion = 23868.516051 eV Total energy + Delta-G solvation = -3851.404371 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.70771 -40.03798 -38.20306 -36.69195 -34.76008 -34.39314 -32.72606 -32.35313 -31.33468 -29.13893 -27.71282 -26.97552 -25.87566 -24.94395 -23.22851 -21.94932 -21.51379 -19.92140 -19.59457 -18.71202 -18.11753 -17.71927 -17.29699 -16.02626 -15.83477 -15.48721 -15.21661 -15.01298 -14.53977 -14.31885 -13.98074 -13.88474 -13.65539 -13.47974 -13.14536 -12.95426 -12.78124 -12.55716 -12.42562 -12.37161 -12.13152 -11.65730 -11.45098 -11.34139 -11.04731 -10.88811 -10.85721 -10.54412 -10.50183 -10.26887 -10.01371 -9.82857 -9.56355 -9.10180 -8.82640 -8.66399 -8.23047 -7.95829 -6.81312 -4.57544 1.85517 2.27039 2.66194 2.76422 2.96233 3.04509 3.24829 3.38079 3.92378 4.08203 4.29946 4.71575 4.74300 4.76842 4.95752 5.04341 5.09059 5.26911 5.34445 5.38936 5.42651 5.46011 5.52763 5.61541 5.68574 5.76693 5.80131 5.80777 5.83998 5.92887 5.96105 6.04151 6.08770 6.13902 6.18049 6.21290 6.23497 6.56440 6.72260 7.10581 7.22450 7.41466 7.80733 7.99272 8.17748 8.46895 8.56942 8.63789 9.19224 10.55272 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.019048 B = 0.003564 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.640284 B = 7854.993813 C = 8733.588634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.366 5.366 3 N -0.288 5.288 4 C 0.087 3.913 5 C -0.262 4.262 6 C 0.346 3.654 7 N -0.669 5.669 8 C 0.723 3.277 9 O -0.588 6.588 10 N -0.645 5.645 11 C 0.152 3.848 12 C 0.200 3.800 13 O -0.567 6.567 14 C -0.614 4.614 15 H 0.071 0.929 16 C 0.034 3.966 17 N -0.888 5.888 18 Si 1.042 2.958 19 H -0.277 1.277 20 H -0.280 1.280 21 H -0.273 1.273 22 C 0.057 3.943 23 C -0.033 4.033 24 C -0.115 4.115 25 C -0.115 4.115 26 C -0.035 4.035 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.416 0.584 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.367 0.633 34 H 0.275 0.725 35 H 0.097 0.903 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.066 0.934 43 H 0.082 0.918 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.704 15.260 -4.303 19.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.150 5.150 3 N -0.110 5.110 4 C -0.080 4.080 5 C -0.276 4.276 6 C 0.125 3.875 7 N -0.323 5.323 8 C 0.427 3.573 9 O -0.466 6.466 10 N -0.382 5.382 11 C 0.030 3.970 12 C 0.159 3.841 13 O -0.377 6.377 14 C -0.653 4.653 15 H 0.090 0.910 16 C -0.173 4.173 17 N -0.520 5.520 18 Si 0.871 3.129 19 H -0.202 1.202 20 H -0.207 1.207 21 H -0.198 1.198 22 C -0.066 4.066 23 C -0.072 4.072 24 C -0.153 4.153 25 C -0.153 4.153 26 C -0.074 4.074 27 H 0.104 0.896 28 H 0.093 0.907 29 H 0.097 0.903 30 H 0.253 0.747 31 H 0.094 0.906 32 H 0.111 0.889 33 H 0.218 0.782 34 H 0.085 0.915 35 H 0.115 0.885 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.100 0.900 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 9.697 16.741 -4.758 19.923 hybrid contribution 0.092 -0.927 0.792 1.223 sum 9.789 15.814 -3.966 19.017 Atomic orbital electron populations 1.21824 0.73591 1.02562 1.04074 1.48637 1.06718 1.02186 1.57490 1.77074 1.01073 1.06483 1.26402 1.21986 0.93352 0.93077 0.99596 1.19416 0.92492 0.94166 1.21527 1.16957 0.89160 0.80079 1.01292 1.41924 1.40664 1.06676 1.43007 1.15493 0.79498 0.82209 0.80142 1.90907 1.56161 1.50901 1.48623 1.49336 1.40313 1.02550 1.46050 1.23180 0.90792 0.87341 0.95646 1.20410 0.83659 0.94277 0.85776 1.86392 1.57334 1.62122 1.31811 1.22213 1.50415 0.90281 1.02346 0.91041 1.25838 0.94393 0.93012 1.04102 1.70790 1.41565 1.18294 1.21373 0.84141 0.77000 0.76485 0.75308 1.20204 1.20743 1.19838 1.24763 1.02658 0.82117 0.97043 1.19880 0.90160 0.95999 1.01115 1.21538 0.97886 0.95900 0.99942 1.21552 0.97162 0.96079 1.00534 1.20087 0.88511 0.96249 1.02529 0.89600 0.90677 0.90340 0.74671 0.90639 0.88940 0.78210 0.91467 0.88530 0.91797 0.91571 0.91799 0.91761 0.91610 0.91215 0.91506 0.90013 0.90157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.82 9.44 59.85 0.56 2.39 16 2 N -0.37 -6.07 3.95 -67.31 -0.27 -6.34 16 3 N -0.29 -4.64 12.55 33.74 0.42 -4.22 16 4 C 0.09 1.21 7.10 -82.36 -0.58 0.63 16 5 C -0.26 -3.69 5.91 -104.77 -0.62 -4.31 16 6 C 0.35 5.56 7.00 -153.18 -1.07 4.48 16 7 N -0.67 -10.48 5.36 -15.96 -0.09 -10.57 16 8 C 0.72 13.49 7.95 -86.92 -0.69 12.80 16 9 O -0.59 -12.33 13.45 5.29 0.07 -12.26 16 10 N -0.65 -12.15 3.61 -183.86 -0.66 -12.81 16 11 C 0.15 3.03 8.23 -2.96 -0.02 3.00 16 12 C 0.20 4.26 1.06 -90.85 -0.10 4.16 16 13 O -0.57 -12.33 13.46 -35.23 -0.47 -12.80 16 14 C -0.61 -15.12 9.06 -34.44 -0.31 -15.43 16 15 H 0.07 1.90 8.05 -52.49 -0.42 1.48 16 16 C 0.03 0.86 5.46 -17.82 -0.10 0.77 16 17 N -0.89 -24.31 13.70 55.43 0.76 -23.55 16 18 Si 1.04 20.87 24.79 -169.99 -4.21 16.66 16 19 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 20 H -0.28 -5.05 5.59 56.52 0.32 -4.73 16 21 H -0.27 -4.84 6.24 56.52 0.35 -4.49 16 22 C 0.06 1.05 5.40 -2.84 -0.02 1.03 16 23 C -0.03 -0.36 6.27 -27.60 -0.17 -0.54 16 24 C -0.12 -0.98 5.87 -26.51 -0.16 -1.14 16 25 C -0.12 -0.94 5.86 -26.52 -0.16 -1.10 16 26 C -0.03 -0.34 6.31 -27.56 -0.17 -0.51 16 27 H 0.09 1.40 7.12 -51.93 -0.37 1.03 16 28 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.08 1.23 7.05 -51.93 -0.37 0.86 16 30 H 0.42 5.55 8.44 -40.82 -0.34 5.20 16 31 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 32 H 0.09 1.75 8.09 -51.93 -0.42 1.33 16 33 H 0.37 7.42 5.52 45.56 0.25 7.67 16 34 H 0.27 7.53 8.72 -40.82 -0.36 7.17 16 35 H 0.10 1.74 8.09 -51.93 -0.42 1.32 16 36 H 0.06 1.06 6.77 -51.93 -0.35 0.71 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 43 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.08 0.73 8.14 -51.92 -0.42 0.30 16 LS Contribution 349.90 15.07 5.27 5.27 Total: -1.00 -30.37 349.90 -8.74 -39.11 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: -5.95 Total: 15.26 kcal Atomic # 6 Polarization: 9.85 SS G_CDS: -3.61 Total: 6.24 kcal Atomic # 7 Polarization: -57.65 SS G_CDS: 0.17 Total: -57.48 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: -0.40 Total: -25.06 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.21 Total: 16.66 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.37 -8.74 -39.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649969928.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.460 kcal (2) G-P(sol) polarization free energy of solvation -30.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds