Wall clock time and date at job start Tue Mar 31 2020 13:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42902 * 109.47093 * 2 1 4 4 C 1.42898 * 113.99955 * 179.97438 * 3 2 1 5 5 H 1.09008 * 110.28992 * 30.68281 * 4 3 2 6 6 C 1.54000 * 110.32756 * 268.54556 * 4 3 2 7 7 N 1.47487 * 107.08183 * 242.41362 * 6 4 3 8 8 C 1.34776 * 127.03159 * 154.51775 * 7 6 4 9 9 O 1.21521 * 119.99744 * 186.24357 * 8 7 6 10 10 C 1.48136 * 120.00232 * 6.23815 * 8 7 6 11 11 C 1.40115 * 121.14267 * 9.26906 * 10 8 7 12 12 C 1.38499 * 117.81888 * 179.97438 * 11 10 8 13 13 N 1.31915 * 119.97122 * 0.24599 * 12 11 10 14 14 N 1.28270 * 122.51670 * 359.47147 * 13 12 11 15 15 C 1.31922 * 122.32606 * 0.54201 * 14 13 12 16 16 C 1.48124 * 105.93388 * 334.77900 * 7 6 4 17 17 C 1.54595 * 103.41892 * 39.02531 * 16 7 6 18 18 H 1.08996 * 110.57749 * 81.17342 * 17 16 7 19 19 C 1.53004 * 110.82871 * 204.44484 * 17 16 7 20 20 N 1.46500 * 109.47221 * 288.56391 * 19 17 16 21 21 C 1.36936 * 119.99647 * 180.02562 * 20 19 17 22 22 H 1.07996 * 120.00607 * 359.97438 * 21 20 19 23 23 C 1.38816 * 119.99720 * 180.02562 * 21 20 19 24 24 N 1.31614 * 120.00055 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 119.99948 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.47430 * 359.97438 * 25 23 21 27 27 H 1.48503 * 109.47210 * 119.99434 * 25 23 21 28 28 H 1.48497 * 109.47289 * 239.99424 * 25 23 21 29 29 H 1.08999 * 109.47339 * 300.00478 * 1 2 3 30 30 H 1.09004 * 109.46650 * 60.00261 * 1 2 3 31 31 H 1.09000 * 109.46934 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47339 * 239.99522 * 2 1 3 33 33 H 1.08998 * 109.47000 * 119.99491 * 2 1 3 34 34 H 1.09000 * 109.91174 * 123.05396 * 6 4 3 35 35 H 1.08994 * 109.91491 * 1.77345 * 6 4 3 36 36 H 1.08000 * 121.08815 * 359.94825 * 11 10 8 37 37 H 1.08009 * 120.00894 * 179.97438 * 12 11 10 38 38 H 1.08004 * 120.17309 * 179.75523 * 15 14 13 39 39 H 1.08998 * 110.66124 * 157.50967 * 16 7 6 40 40 H 1.09002 * 110.65932 * 280.62188 * 16 7 6 41 41 H 1.09007 * 109.46906 * 48.56756 * 19 17 16 42 42 H 1.09000 * 109.47053 * 168.56291 * 19 17 16 43 43 H 0.96994 * 120.00163 * 359.97438 * 20 19 17 44 44 H 0.97001 * 120.00477 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8773 0.6133 -0.5208 6 6 3.9607 1.5391 1.4444 7 7 4.6219 2.8491 1.5922 8 6 4.8008 3.5440 2.7331 9 8 5.2639 4.6668 2.6943 10 6 4.4329 2.9390 4.0343 11 6 4.0799 1.5865 4.1306 12 6 3.7485 1.0925 5.3813 13 7 3.7675 1.8907 6.4314 14 7 4.0946 3.1284 6.3508 15 6 4.4266 3.6974 5.2078 16 6 5.0435 3.2479 0.2293 17 6 3.8646 2.7894 -0.6594 18 1 3.0549 3.5184 -0.6277 19 6 4.3276 2.5540 -2.0986 20 7 4.6180 3.8413 -2.7349 21 6 5.0507 3.8809 -4.0335 22 1 5.1784 2.9633 -4.5884 23 6 5.3263 5.1006 -4.6363 24 7 5.1712 6.2189 -3.9598 25 14 5.9174 5.1547 -6.4074 26 1 6.0094 3.7719 -6.9411 27 1 4.9577 5.9387 -7.2258 28 1 7.2553 5.7965 -6.4634 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 4.6792 0.7386 1.6205 35 1 3.1326 1.4598 2.1486 36 1 4.0662 0.9502 3.2580 37 1 3.4705 0.0551 5.4961 38 1 4.6925 4.7438 5.1794 39 1 5.1733 4.3283 0.1676 40 1 5.9607 2.7324 -0.0557 41 1 5.2279 1.9393 -2.0947 42 1 3.5413 2.0432 -2.6543 43 1 4.5030 4.6655 -2.2366 44 1 5.3635 7.0713 -4.3811 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692042049.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:48 Heat of formation + Delta-G solvation = 16.195264 kcal Electronic energy + Delta-G solvation = -26966.394027 eV Core-core repulsion = 23113.898853 eV Total energy + Delta-G solvation = -3852.495174 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.62238 -40.21564 -38.65223 -36.76472 -35.00596 -33.81182 -32.86776 -32.21391 -31.42560 -29.79182 -28.70832 -26.61106 -25.28572 -24.58877 -23.73107 -22.97872 -22.02884 -20.59293 -20.21355 -18.30303 -17.60778 -17.29442 -17.11947 -16.93056 -15.99123 -15.94958 -15.63189 -15.20213 -15.02120 -14.72497 -14.52859 -14.16717 -13.83922 -13.69277 -13.30758 -13.16781 -12.97355 -12.67733 -12.51598 -12.25016 -11.85554 -11.53695 -11.36535 -11.34434 -11.15230 -10.85179 -10.83000 -10.66565 -10.59790 -10.51172 -10.46391 -10.12526 -9.99864 -9.82841 -9.64326 -8.96376 -8.88501 -6.99094 -5.80161 -3.10472 -0.04725 0.47384 2.45944 2.51616 3.26925 3.41079 3.41920 3.46606 3.48974 3.71613 3.82184 4.04184 4.07264 4.20803 4.32725 4.52474 4.63918 4.73986 4.82559 4.94215 4.97744 5.01828 5.10322 5.12684 5.16713 5.21689 5.41284 5.47960 5.50749 5.57342 5.62335 5.69207 5.75217 5.90624 5.93143 5.98564 6.13464 6.22600 6.58297 6.63145 7.07375 7.19206 7.65694 7.77705 8.25704 8.37253 9.48982 10.04151 10.38518 11.42284 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013762 B = 0.003257 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.164984 B = 8594.207112 C =10266.395668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.053 3.947 3 O -0.370 6.370 4 C 0.083 3.917 5 H 0.086 0.914 6 C 0.063 3.937 7 N -0.607 5.607 8 C 0.578 3.422 9 O -0.515 6.515 10 C -0.120 4.120 11 C -0.109 4.109 12 C 0.036 3.964 13 N -0.231 5.231 14 N -0.243 5.243 15 C 0.095 3.905 16 C 0.115 3.885 17 C -0.102 4.102 18 H 0.098 0.902 19 C 0.167 3.833 20 N -0.731 5.731 21 C -0.244 4.244 22 H 0.071 0.929 23 C -0.011 4.011 24 N -0.929 5.929 25 Si 0.907 3.093 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.291 1.291 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.053 0.947 33 H 0.045 0.955 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.173 0.827 37 H 0.179 0.821 38 H 0.186 0.814 39 H 0.100 0.900 40 H 0.084 0.916 41 H 0.022 0.978 42 H 0.026 0.974 43 H 0.385 0.615 44 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.532 -16.619 15.449 23.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.024 4.024 3 O -0.288 6.288 4 C 0.024 3.976 5 H 0.104 0.896 6 C -0.061 4.061 7 N -0.341 5.341 8 C 0.365 3.635 9 O -0.391 6.391 10 C -0.135 4.135 11 C -0.138 4.138 12 C -0.128 4.128 13 N -0.073 5.073 14 N -0.084 5.084 15 C -0.070 4.070 16 C -0.006 4.006 17 C -0.122 4.122 18 H 0.116 0.884 19 C 0.038 3.962 20 N -0.376 5.376 21 C -0.375 4.375 22 H 0.089 0.911 23 C -0.208 4.208 24 N -0.577 5.577 25 Si 0.738 3.262 26 H -0.206 1.206 27 H -0.218 1.218 28 H -0.218 1.218 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.099 0.901 35 H 0.110 0.890 36 H 0.190 0.810 37 H 0.196 0.804 38 H 0.203 0.797 39 H 0.118 0.882 40 H 0.102 0.898 41 H 0.040 0.960 42 H 0.044 0.956 43 H 0.219 0.781 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.565 -15.662 16.991 23.769 hybrid contribution 0.610 -0.170 -2.432 2.513 sum -4.955 -15.832 14.560 22.072 Atomic orbital electron populations 1.21745 0.93722 1.02136 1.03353 1.22561 0.95781 0.83983 1.00044 1.88058 1.19926 1.26221 1.94642 1.23059 0.81763 0.99754 0.93051 0.89619 1.23200 0.97547 0.85779 0.99555 1.48583 1.57213 1.20583 1.07740 1.17484 0.79208 0.84796 0.82032 1.90859 1.44759 1.17336 1.86135 1.21243 1.00919 0.95260 0.96078 1.23611 0.93631 0.95629 1.00941 1.24376 0.96698 1.02239 0.89449 1.72872 1.07531 0.98825 1.28096 1.73161 1.07940 1.04006 1.23259 1.24628 0.91861 1.02551 0.87910 1.22656 0.97063 1.03402 0.77442 1.22564 0.97917 0.95696 0.96023 0.88382 1.20607 0.96883 0.90514 0.88156 1.42341 1.80659 1.02161 1.12448 1.19219 1.36970 0.92648 0.88627 0.91095 1.24760 1.02268 0.95373 0.98372 1.69666 1.54864 0.96914 1.36300 0.86124 0.78079 0.77290 0.84689 1.20565 1.21827 1.21824 0.91999 0.91542 0.91188 0.92900 0.93629 0.90124 0.89042 0.81029 0.80410 0.79717 0.88189 0.89793 0.96002 0.95580 0.78100 0.93431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 10.28 37.16 0.38 -0.77 16 2 C 0.05 0.43 6.51 37.16 0.24 0.67 16 3 O -0.37 -4.29 9.94 -35.23 -0.35 -4.64 16 4 C 0.08 0.90 3.04 -25.36 -0.08 0.82 16 5 H 0.09 0.78 7.56 -51.92 -0.39 0.39 16 6 C 0.06 0.55 4.82 -2.98 -0.01 0.54 16 7 N -0.61 -7.56 3.29 -170.98 -0.56 -8.13 16 8 C 0.58 7.94 7.85 -12.20 -0.10 7.84 16 9 O -0.52 -8.99 16.68 5.35 0.09 -8.90 16 10 C -0.12 -1.33 5.90 -104.57 -0.62 -1.94 16 11 C -0.11 -0.86 8.53 -38.78 -0.33 -1.19 16 12 C 0.04 0.28 11.30 -17.42 -0.20 0.08 16 13 N -0.23 -2.58 11.48 30.53 0.35 -2.23 16 14 N -0.24 -2.99 11.49 30.78 0.35 -2.64 16 15 C 0.10 1.09 10.90 -16.96 -0.18 0.90 16 16 C 0.12 1.69 6.46 -2.31 -0.01 1.67 16 17 C -0.10 -1.51 2.80 -88.93 -0.25 -1.76 16 18 H 0.10 1.67 8.08 -51.93 -0.42 1.26 16 19 C 0.17 3.03 5.58 -4.04 -0.02 3.01 16 20 N -0.73 -17.70 5.52 -59.90 -0.33 -18.03 16 21 C -0.24 -6.61 9.99 -15.06 -0.15 -6.76 16 22 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 23 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 24 N -0.93 -27.86 13.06 55.49 0.72 -27.14 16 25 Si 0.91 22.07 29.55 -169.99 -5.02 17.04 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 28 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.05 0.41 8.10 -51.93 -0.42 -0.01 16 33 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.08 0.48 7.47 -51.93 -0.39 0.09 16 35 H 0.09 0.71 5.77 -51.93 -0.30 0.41 16 36 H 0.17 0.92 3.74 -52.49 -0.20 0.72 16 37 H 0.18 0.65 8.06 -52.48 -0.42 0.23 16 38 H 0.19 1.94 7.77 -52.48 -0.41 1.53 16 39 H 0.10 1.75 7.81 -51.93 -0.41 1.35 16 40 H 0.08 1.17 7.93 -51.93 -0.41 0.76 16 41 H 0.02 0.39 7.99 -51.93 -0.41 -0.03 16 42 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.39 9.95 7.67 -40.82 -0.31 9.64 16 44 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 366.60 15.07 5.52 5.52 Total: -1.00 -34.33 366.60 -6.80 -41.14 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -6.15 Total: 5.32 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: -1.43 Total: 2.69 kcal Atomic # 7 Polarization: -58.70 SS G_CDS: 0.53 Total: -58.17 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: -0.26 Total: -13.55 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.33 -6.80 -41.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692042049.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.332 kcal (2) G-P(sol) polarization free energy of solvation -34.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds