Wall clock time and date at job start Tue Mar 31 2020 12:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21272 * 120.00567 * 2 1 4 4 N 1.34781 * 119.99391 * 179.97438 * 2 1 3 5 5 C 1.39462 * 119.99787 * 184.66573 * 4 2 1 6 6 C 1.39371 * 120.39935 * 324.98592 * 5 4 2 7 7 C 1.38280 * 118.43413 * 179.76854 * 6 5 4 8 8 C 1.39490 * 119.14494 * 0.48915 * 7 6 5 9 9 C 1.47921 * 119.64007 * 179.77080 * 8 7 6 10 10 O 1.21541 * 120.00318 * 359.72957 * 9 8 7 11 11 N 1.34773 * 119.99457 * 179.73014 * 9 8 7 12 12 C 1.46513 * 119.99695 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.47140 * 179.97438 * 12 11 9 14 14 H 1.09004 * 109.46839 * 304.99759 * 13 12 11 15 15 C 1.53006 * 109.47273 * 64.99462 * 13 12 11 16 16 C 1.52993 * 109.47061 * 184.99672 * 13 12 11 17 17 N 1.46497 * 109.47317 * 174.99697 * 16 13 12 18 18 C 1.36941 * 120.00502 * 179.97438 * 17 16 13 19 19 H 1.08000 * 119.99780 * 0.02562 * 18 17 16 20 20 C 1.38808 * 120.00418 * 180.02562 * 18 17 16 21 21 N 1.31628 * 119.99502 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00250 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46951 * 60.00002 * 22 20 18 24 24 H 1.48493 * 109.47141 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47124 * 300.00126 * 22 20 18 26 26 N 1.32808 * 120.71633 * 359.49726 * 8 7 6 27 27 C 1.31356 * 121.71043 * 0.25703 * 26 8 7 28 28 H 1.08999 * 109.47422 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46919 * 300.00754 * 1 2 3 30 30 H 1.09002 * 109.46620 * 59.99759 * 1 2 3 31 31 H 0.96999 * 120.00464 * 4.67350 * 4 2 1 32 32 H 1.08005 * 120.78003 * 0.02562 * 6 5 4 33 33 H 1.07996 * 120.42838 * 180.26491 * 7 6 5 34 34 H 0.96997 * 120.00814 * 359.97438 * 11 9 8 35 35 H 1.09000 * 109.47091 * 59.99827 * 12 11 9 36 36 H 1.09005 * 109.46674 * 299.99527 * 12 11 9 37 37 H 1.08994 * 109.47048 * 300.00724 * 15 13 12 38 38 H 1.09006 * 109.46366 * 59.99875 * 15 13 12 39 39 H 1.08994 * 109.47029 * 180.02562 * 15 13 12 40 40 H 1.08994 * 109.47392 * 294.99877 * 16 13 12 41 41 H 1.09007 * 109.47074 * 55.00205 * 16 13 12 42 42 H 0.97002 * 119.99796 * 0.02562 * 17 16 13 43 43 H 0.96998 * 119.99235 * 180.02562 * 21 20 18 44 44 H 1.07999 * 119.60569 * 180.02562 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0502 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 3.5719 -1.1694 0.0988 6 6 4.3227 -0.1589 -0.4994 7 6 5.6991 -0.1982 -0.3724 8 6 6.2863 -1.2463 0.3365 9 6 7.7579 -1.3018 0.4749 10 8 8.4490 -0.4399 -0.0319 11 7 8.3325 -2.3083 1.1629 12 6 9.7901 -2.3630 1.3004 13 6 10.1790 -3.5944 2.1209 14 1 9.6528 -3.5760 3.0754 15 6 9.7970 -4.8610 1.3523 16 6 11.6884 -3.5850 2.3705 17 7 12.0441 -4.6973 3.2551 18 6 13.3496 -4.8914 3.6201 19 1 14.1170 -4.2243 3.2562 20 6 13.6867 -5.9456 4.4579 21 7 12.7515 -6.7590 4.9010 22 14 15.4674 -6.2100 4.9564 23 1 15.9641 -5.0085 5.6740 24 1 15.5613 -7.3938 5.8479 25 1 16.2925 -6.4381 3.7429 26 7 5.5380 -2.1918 0.8932 27 6 4.2281 -2.1822 0.7960 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.6982 -2.0060 -0.0675 32 1 3.8405 0.6383 -1.0457 33 1 6.3118 0.5707 -0.8194 34 1 7.7810 -2.9959 1.5676 35 1 10.1413 -1.4638 1.8065 36 1 10.2461 -2.4255 0.3123 37 1 8.7217 -4.8676 1.1744 38 1 10.3232 -4.8793 0.3978 39 1 10.0737 -5.7382 1.9370 40 1 12.2142 -3.6929 1.4218 41 1 11.9734 -2.6429 2.8389 42 1 11.3550 -5.2967 3.5817 43 1 12.9870 -7.4954 5.4867 44 1 3.6527 -2.9681 1.2625 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698750001.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:16 Heat of formation + Delta-G solvation = -28.609004 kcal Electronic energy + Delta-G solvation = -25315.399190 eV Core-core repulsion = 21460.961157 eV Total energy + Delta-G solvation = -3854.438032 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.43750 -40.16212 -38.93454 -36.78392 -35.69562 -34.36898 -32.84974 -32.33057 -31.58396 -30.10408 -29.42632 -26.59202 -25.54454 -24.58353 -23.79297 -22.42049 -21.48960 -20.66084 -19.97384 -18.67867 -18.07290 -17.62043 -16.93591 -16.84935 -16.00999 -15.70719 -15.46874 -15.05749 -14.82226 -14.60431 -14.46399 -14.15855 -13.84308 -13.55775 -13.54147 -13.36566 -13.03055 -13.00097 -12.79145 -12.55938 -12.25034 -11.99289 -11.44398 -11.01997 -10.86432 -10.81298 -10.66673 -10.54393 -10.45931 -10.31026 -10.13377 -10.00387 -9.75515 -9.61856 -9.06247 -8.83749 -8.79911 -6.88349 -5.73472 -3.01667 0.21457 0.84860 1.85028 2.32378 2.62463 3.09401 3.47234 3.51232 3.52488 3.58679 3.87080 4.03373 4.31119 4.41909 4.53377 4.62346 4.67595 4.73162 4.75996 5.10437 5.14883 5.23521 5.27714 5.41296 5.46198 5.61264 5.64958 5.71411 5.87657 6.02165 6.03876 6.16170 6.20865 6.31807 6.44694 6.51988 6.61133 6.70858 6.82820 6.92149 7.25270 7.38986 7.60379 7.73432 8.16379 8.45822 9.56897 10.14749 10.49658 11.49487 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.033900 B = 0.001814 C = 0.001751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.757375 B =15435.408686 C =15984.276260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.511 3.489 3 O -0.523 6.523 4 N -0.668 5.668 5 C 0.109 3.891 6 C -0.087 4.087 7 C -0.089 4.089 8 C 0.064 3.936 9 C 0.569 3.431 10 O -0.537 6.537 11 N -0.703 5.703 12 C 0.124 3.876 13 C -0.110 4.110 14 H 0.077 0.923 15 C -0.142 4.142 16 C 0.160 3.840 17 N -0.730 5.730 18 C -0.239 4.239 19 H 0.070 0.930 20 C -0.015 4.015 21 N -0.935 5.935 22 Si 0.908 3.092 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 N -0.436 5.436 27 C 0.080 3.920 28 H 0.081 0.919 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.416 0.584 32 H 0.155 0.845 33 H 0.153 0.847 34 H 0.411 0.589 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.044 0.956 38 H 0.052 0.948 39 H 0.069 0.931 40 H 0.022 0.978 41 H 0.021 0.979 42 H 0.384 0.616 43 H 0.255 0.745 44 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.456 10.324 -12.392 33.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.300 3.700 3 O -0.397 6.397 4 N -0.315 5.315 5 C 0.012 3.988 6 C -0.115 4.115 7 C -0.111 4.111 8 C -0.074 4.074 9 C 0.353 3.647 10 O -0.414 6.414 11 N -0.354 5.354 12 C 0.001 3.999 13 C -0.130 4.130 14 H 0.096 0.904 15 C -0.199 4.199 16 C 0.032 3.968 17 N -0.375 5.375 18 C -0.370 4.370 19 H 0.088 0.912 20 C -0.210 4.210 21 N -0.584 5.584 22 Si 0.739 3.261 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 N -0.147 5.147 27 C -0.083 4.083 28 H 0.100 0.900 29 H 0.120 0.880 30 H 0.119 0.881 31 H 0.254 0.746 32 H 0.173 0.827 33 H 0.171 0.829 34 H 0.247 0.753 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.088 0.912 40 H 0.040 0.960 41 H 0.039 0.961 42 H 0.218 0.782 43 H 0.065 0.935 44 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -27.935 11.062 -12.254 32.449 hybrid contribution -0.277 -0.559 0.204 0.656 sum -28.212 10.503 -12.050 32.426 Atomic orbital electron populations 1.21866 0.90051 1.04877 1.06041 1.21162 0.91154 0.82933 0.74789 1.90764 1.70358 1.31259 1.47340 1.43541 1.04601 1.10513 1.72808 1.19029 0.83976 0.98113 0.97686 1.21733 0.93030 0.99001 0.97732 1.22082 0.94620 0.97917 0.96455 1.21199 0.94381 0.93037 0.98808 1.17743 0.85770 0.82080 0.79124 1.90798 1.63171 1.38971 1.48436 1.45918 1.08708 1.27215 1.53541 1.21504 0.78577 0.98974 1.00872 1.21551 0.98946 0.93680 0.98777 0.90436 1.21795 0.99588 0.98143 1.00406 1.20576 0.90066 0.92083 0.94042 1.42330 1.06875 1.31808 1.56488 1.19207 0.85116 1.09459 1.23231 0.91200 1.24732 0.97562 0.98172 1.00575 1.69655 1.31429 1.18858 1.38410 0.86250 0.84647 0.77145 0.78044 1.21288 1.21729 1.21294 1.67525 1.06252 1.24218 1.16739 1.22636 0.90237 0.98461 0.96958 0.90039 0.88009 0.88097 0.74643 0.82721 0.82933 0.75274 0.91087 0.91070 0.93723 0.92858 0.91154 0.95971 0.96102 0.78187 0.93523 0.81735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.23 10.39 36.01 0.37 0.15 16 2 C 0.51 2.89 7.79 -10.98 -0.09 2.81 16 3 O -0.52 -5.38 14.56 5.56 0.08 -5.30 16 4 N -0.67 -2.89 5.33 -9.74 -0.05 -2.94 16 5 C 0.11 0.83 6.32 -83.54 -0.53 0.31 16 6 C -0.09 -0.82 8.79 -39.14 -0.34 -1.17 16 7 C -0.09 -0.97 9.62 -39.10 -0.38 -1.35 16 8 C 0.06 0.78 6.75 -83.01 -0.56 0.22 16 9 C 0.57 8.19 7.80 -12.30 -0.10 8.09 16 10 O -0.54 -9.18 16.31 5.33 0.09 -9.09 16 11 N -0.70 -9.47 5.27 -61.22 -0.32 -9.80 16 12 C 0.12 1.82 5.06 -4.04 -0.02 1.80 16 13 C -0.11 -1.78 2.46 -90.62 -0.22 -2.00 16 14 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 15 C -0.14 -2.20 8.94 37.16 0.33 -1.86 16 16 C 0.16 3.26 5.65 -4.05 -0.02 3.23 16 17 N -0.73 -18.58 5.33 -59.91 -0.32 -18.90 16 18 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 19 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 20 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 21 N -0.93 -28.38 13.06 55.49 0.72 -27.65 16 22 Si 0.91 22.66 29.55 -169.99 -5.02 17.64 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 N -0.44 -4.68 9.52 -9.64 -0.09 -4.77 16 27 C 0.08 0.63 11.12 -17.33 -0.19 0.43 16 28 H 0.08 -0.10 7.92 -51.93 -0.41 -0.51 16 29 H 0.10 0.13 8.14 -51.93 -0.42 -0.30 16 30 H 0.10 0.09 8.14 -51.93 -0.42 -0.33 16 31 H 0.42 0.21 8.66 -40.82 -0.35 -0.14 16 32 H 0.16 1.46 6.31 -52.48 -0.33 1.13 16 33 H 0.15 1.60 7.63 -52.49 -0.40 1.20 16 34 H 0.41 5.04 6.97 -40.82 -0.28 4.76 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.04 0.58 7.18 -51.93 -0.37 0.21 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.07 1.25 7.18 -51.93 -0.37 0.88 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.38 10.16 6.85 -40.82 -0.28 9.88 16 43 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 44 H 0.17 0.72 8.06 -52.49 -0.42 0.30 16 LS Contribution 374.49 15.07 5.64 5.64 Total: -1.00 -36.40 374.49 -7.42 -43.82 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -6.16 Total: 8.16 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: -1.99 Total: 3.20 kcal Atomic # 7 Polarization: -64.00 SS G_CDS: -0.06 Total: -64.06 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: 0.17 Total: -14.40 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.40 -7.42 -43.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698750001.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.209 kcal (2) G-P(sol) polarization free energy of solvation -36.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds