Wall clock time and date at job start Tue Mar 31 2020 12:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21284 * 120.00074 * 2 1 4 4 N 1.34773 * 120.00425 * 179.97438 * 2 1 3 5 5 C 1.39457 * 120.00516 * 184.67119 * 4 2 1 6 6 C 1.39369 * 120.39287 * 324.98113 * 5 4 2 7 7 C 1.38287 * 118.43470 * 180.02562 * 6 5 4 8 8 C 1.39488 * 119.14534 * 359.97438 * 7 6 5 9 9 C 1.47918 * 119.64287 * 180.02562 * 8 7 6 10 10 O 1.21542 * 120.00242 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99898 * 180.02562 * 9 8 7 12 12 C 1.46497 * 120.00149 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.47594 * 179.97438 * 12 11 9 14 14 H 1.09006 * 109.46790 * 54.99547 * 13 12 11 15 15 C 1.52995 * 109.47004 * 294.99976 * 13 12 11 16 16 C 1.52999 * 109.47273 * 174.99629 * 13 12 11 17 17 N 1.46503 * 109.46953 * 185.00165 * 16 13 12 18 18 C 1.36938 * 119.99867 * 180.02562 * 17 16 13 19 19 H 1.07997 * 119.99878 * 0.02562 * 18 17 16 20 20 C 1.38807 * 119.99664 * 180.02562 * 18 17 16 21 21 N 1.31618 * 120.00567 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99827 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46999 * 59.99942 * 22 20 18 24 24 H 1.48495 * 109.47146 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47037 * 299.99787 * 22 20 18 26 26 N 1.32808 * 120.71439 * 0.02562 * 8 7 6 27 27 C 1.31353 * 121.71400 * 0.02562 * 26 8 7 28 28 H 1.09006 * 109.47130 * 239.99623 * 1 2 3 29 29 H 1.08998 * 109.47327 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.46934 * 120.00097 * 1 2 3 31 31 H 0.97002 * 120.00008 * 4.66897 * 4 2 1 32 32 H 1.08001 * 120.78521 * 0.04437 * 6 5 4 33 33 H 1.08000 * 120.43261 * 179.97438 * 7 6 5 34 34 H 0.97007 * 119.99966 * 359.97438 * 11 9 8 35 35 H 1.09005 * 109.46691 * 299.99571 * 12 11 9 36 36 H 1.09006 * 109.47026 * 59.98957 * 12 11 9 37 37 H 1.09002 * 109.47230 * 299.99882 * 15 13 12 38 38 H 1.09003 * 109.47298 * 60.00021 * 15 13 12 39 39 H 1.09000 * 109.47078 * 179.97438 * 15 13 12 40 40 H 1.09003 * 109.46771 * 305.00174 * 16 13 12 41 41 H 1.08996 * 109.46675 * 65.00369 * 16 13 12 42 42 H 0.96996 * 119.99833 * 0.02562 * 17 16 13 43 43 H 0.96998 * 120.00458 * 180.02562 * 21 20 18 44 44 H 1.07998 * 119.61282 * 179.97438 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.5720 -1.1691 0.0989 6 6 4.3226 -0.1586 -0.4993 7 6 5.6994 -0.2006 -0.3768 8 6 6.2863 -1.2455 0.3368 9 6 7.7580 -1.3009 0.4752 10 8 8.4490 -0.4392 -0.0319 11 7 8.3327 -2.3076 1.1628 12 6 9.7903 -2.3629 1.2994 13 6 10.1794 -3.5944 2.1196 14 1 9.7517 -4.4861 1.6613 15 6 9.6446 -3.4473 3.5455 16 6 11.7037 -3.7214 2.1572 17 7 12.0735 -4.9638 2.8399 18 6 13.3937 -5.2930 2.9949 19 1 14.1621 -4.6366 2.6142 20 6 13.7440 -6.4703 3.6413 21 7 12.8075 -7.2701 4.1057 22 14 15.5449 -6.9191 3.8534 23 1 16.2295 -5.8611 4.6390 24 1 15.6509 -8.2148 4.5712 25 1 16.1859 -7.0380 2.5191 26 7 5.5382 -2.1911 0.8935 27 6 4.2283 -2.1821 0.7957 28 1 -0.3634 -0.5139 0.8900 29 1 -0.3634 1.0276 0.0005 30 1 -0.3633 -0.5138 -0.8900 31 1 1.6984 -2.0058 -0.0675 32 1 3.8404 0.6387 -1.0454 33 1 6.3124 0.5657 -0.8279 34 1 7.7813 -2.9956 1.5673 35 1 10.2457 -2.4254 0.3110 36 1 10.1422 -1.4637 1.8053 37 1 10.0723 -2.5556 4.0038 38 1 8.5587 -3.3569 3.5188 39 1 9.9215 -4.3249 4.1297 40 1 12.0921 -3.7369 1.1388 41 1 12.1258 -2.8721 2.6943 42 1 11.3833 -5.5531 3.1821 43 1 13.0523 -8.0926 4.5577 44 1 3.6530 -2.9685 1.2614 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698750004.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:19 Heat of formation + Delta-G solvation = -29.106926 kcal Electronic energy + Delta-G solvation = -25317.037995 eV Core-core repulsion = 21462.578371 eV Total energy + Delta-G solvation = -3854.459624 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.43659 -40.16117 -38.93461 -36.78349 -35.69418 -34.36927 -32.84705 -32.33071 -31.57652 -30.10506 -29.43027 -26.59031 -25.54524 -24.58453 -23.79430 -22.42115 -21.48328 -20.65686 -19.97326 -18.68034 -18.06626 -17.62407 -16.93706 -16.85822 -16.01164 -15.70469 -15.47943 -15.05007 -14.81242 -14.58137 -14.47790 -14.16227 -13.85661 -13.56093 -13.51704 -13.32790 -13.07714 -12.95830 -12.82385 -12.56000 -12.25214 -11.99184 -11.44815 -11.02037 -10.86622 -10.80609 -10.66640 -10.54408 -10.45725 -10.30975 -10.13393 -10.00487 -9.75624 -9.61864 -9.06182 -8.83875 -8.79751 -6.88449 -5.73480 -3.01716 0.21575 0.84826 1.84819 2.31883 2.62273 3.09413 3.47178 3.51184 3.52417 3.58614 3.87075 4.02650 4.30954 4.46056 4.57432 4.62295 4.65956 4.69524 4.76081 5.10464 5.17598 5.23446 5.27795 5.41322 5.46282 5.61243 5.64950 5.71465 5.87958 6.02503 6.03723 6.16190 6.20958 6.32070 6.45017 6.52085 6.60984 6.71035 6.82833 6.92222 7.25284 7.38969 7.60346 7.73385 8.16385 8.45704 9.56850 10.14703 10.49650 11.49456 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.035622 B = 0.001811 C = 0.001745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.842591 B =15457.719618 C =16040.511587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.511 3.489 3 O -0.521 6.521 4 N -0.669 5.669 5 C 0.110 3.890 6 C -0.088 4.088 7 C -0.089 4.089 8 C 0.064 3.936 9 C 0.569 3.431 10 O -0.537 6.537 11 N -0.703 5.703 12 C 0.124 3.876 13 C -0.110 4.110 14 H 0.077 0.923 15 C -0.142 4.142 16 C 0.160 3.840 17 N -0.730 5.730 18 C -0.239 4.239 19 H 0.070 0.930 20 C -0.014 4.014 21 N -0.935 5.935 22 Si 0.908 3.092 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 N -0.436 5.436 27 C 0.080 3.920 28 H 0.094 0.906 29 H 0.098 0.902 30 H 0.094 0.906 31 H 0.417 0.583 32 H 0.155 0.845 33 H 0.153 0.847 34 H 0.411 0.589 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.052 0.948 38 H 0.044 0.956 39 H 0.069 0.931 40 H 0.021 0.979 41 H 0.022 0.978 42 H 0.384 0.616 43 H 0.255 0.745 44 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.678 12.237 -9.306 33.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.299 3.701 3 O -0.396 6.396 4 N -0.316 5.316 5 C 0.013 3.987 6 C -0.115 4.115 7 C -0.111 4.111 8 C -0.074 4.074 9 C 0.353 3.647 10 O -0.414 6.414 11 N -0.354 5.354 12 C 0.001 3.999 13 C -0.129 4.129 14 H 0.096 0.904 15 C -0.200 4.200 16 C 0.032 3.968 17 N -0.375 5.375 18 C -0.370 4.370 19 H 0.088 0.912 20 C -0.210 4.210 21 N -0.584 5.584 22 Si 0.739 3.261 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 N -0.147 5.147 27 C -0.083 4.083 28 H 0.113 0.887 29 H 0.117 0.883 30 H 0.112 0.888 31 H 0.254 0.746 32 H 0.173 0.827 33 H 0.171 0.829 34 H 0.247 0.753 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.088 0.912 40 H 0.039 0.961 41 H 0.040 0.960 42 H 0.218 0.782 43 H 0.065 0.935 44 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -28.156 12.968 -9.188 32.332 hybrid contribution -0.263 -0.685 0.018 0.734 sum -28.419 12.283 -9.170 32.289 Atomic orbital electron populations 1.21937 0.90026 1.06366 1.04870 1.21161 0.91171 0.82910 0.74828 1.90766 1.70504 1.31258 1.47070 1.43448 1.04589 1.10538 1.72977 1.19021 0.83939 0.98111 0.97663 1.21733 0.93032 0.99013 0.97742 1.22084 0.94616 0.97924 0.96444 1.21196 0.94380 0.93060 0.98800 1.17744 0.85771 0.82108 0.79095 1.90798 1.63176 1.39023 1.48379 1.45917 1.08713 1.27234 1.53518 1.21503 0.78571 0.99154 1.00703 1.21550 0.98561 0.96754 0.96069 0.90439 1.21796 0.99116 1.02923 0.96120 1.20578 0.89829 0.90553 0.95809 1.42328 1.05311 1.21321 1.68538 1.19206 0.84017 1.03277 1.30524 0.91197 1.24728 0.97466 0.97480 1.01345 1.69646 1.31117 1.13602 1.43987 0.86255 0.84830 0.77373 0.77654 1.21292 1.21728 1.21287 1.67521 1.06252 1.24124 1.16829 1.22634 0.90235 0.98467 0.96973 0.88721 0.88303 0.88784 0.74639 0.82721 0.82932 0.75274 0.91077 0.91086 0.92853 0.93722 0.91151 0.96104 0.95967 0.78188 0.93517 0.81737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.23 10.32 36.00 0.37 0.14 16 2 C 0.51 2.88 7.79 -10.99 -0.09 2.79 16 3 O -0.52 -5.37 14.55 5.55 0.08 -5.29 16 4 N -0.67 -2.86 5.33 -9.74 -0.05 -2.92 16 5 C 0.11 0.84 6.32 -83.55 -0.53 0.31 16 6 C -0.09 -0.83 8.79 -39.14 -0.34 -1.17 16 7 C -0.09 -0.97 9.62 -39.10 -0.38 -1.34 16 8 C 0.06 0.78 6.75 -83.02 -0.56 0.22 16 9 C 0.57 8.18 7.80 -12.30 -0.10 8.09 16 10 O -0.54 -9.18 16.31 5.33 0.09 -9.09 16 11 N -0.70 -9.47 5.27 -61.22 -0.32 -9.79 16 12 C 0.12 1.81 5.06 -4.04 -0.02 1.79 16 13 C -0.11 -1.77 2.46 -90.62 -0.22 -2.00 16 14 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 15 C -0.14 -2.22 8.94 37.15 0.33 -1.89 16 16 C 0.16 3.26 5.65 -4.04 -0.02 3.23 16 17 N -0.73 -18.57 5.33 -59.91 -0.32 -18.89 16 18 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 19 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 20 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 21 N -0.93 -28.36 13.06 55.49 0.72 -27.64 16 22 Si 0.91 22.65 29.55 -169.99 -5.02 17.62 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 N -0.44 -4.68 9.52 -9.64 -0.09 -4.77 16 27 C 0.08 0.62 11.12 -17.33 -0.19 0.43 16 28 H 0.09 -0.03 8.14 -51.93 -0.42 -0.46 16 29 H 0.10 0.20 8.12 -51.93 -0.42 -0.22 16 30 H 0.09 -0.06 8.14 -51.93 -0.42 -0.48 16 31 H 0.42 0.20 8.82 -40.82 -0.36 -0.16 16 32 H 0.16 1.46 6.31 -52.49 -0.33 1.13 16 33 H 0.15 1.60 7.63 -52.49 -0.40 1.20 16 34 H 0.41 5.04 6.97 -40.82 -0.28 4.76 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.04 0.59 7.18 -51.93 -0.37 0.22 16 39 H 0.07 1.26 7.18 -51.93 -0.37 0.89 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.38 10.15 6.85 -40.82 -0.28 9.87 16 43 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 44 H 0.17 0.72 8.06 -52.49 -0.42 0.30 16 LS Contribution 374.77 15.07 5.65 5.65 Total: -1.00 -36.39 374.77 -7.44 -43.82 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -6.17 Total: 8.13 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: -1.99 Total: 3.17 kcal Atomic # 7 Polarization: -63.94 SS G_CDS: -0.06 Total: -64.01 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: 0.17 Total: -14.38 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -36.39 -7.44 -43.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698750004.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.714 kcal (2) G-P(sol) polarization free energy of solvation -36.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds