Wall clock time and date at job start Tue Mar 31 2020 12:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.47048 * 2 1 4 4 C 1.53001 * 109.46927 * 240.00438 * 2 1 3 5 5 N 1.46502 * 109.47258 * 185.00122 * 4 2 1 6 6 C 1.36935 * 120.00121 * 179.97438 * 5 4 2 7 7 H 1.07998 * 119.99848 * 359.97438 * 6 5 4 8 8 C 1.38817 * 120.00025 * 179.97438 * 6 5 4 9 9 N 1.31612 * 119.99590 * 359.97438 * 8 6 5 10 10 Si 1.86792 * 119.99859 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47431 * 90.00018 * 10 8 6 12 12 H 1.48506 * 109.46986 * 209.99929 * 10 8 6 13 13 H 1.48501 * 109.47259 * 329.99574 * 10 8 6 14 14 N 1.46498 * 109.47528 * 120.00197 * 2 1 3 15 15 C 1.46494 * 119.99895 * 59.99485 * 14 2 1 16 16 C 1.34779 * 119.99857 * 240.00277 * 14 2 1 17 17 O 1.21472 * 119.99865 * 2.31709 * 16 14 2 18 18 C 1.48447 * 119.99694 * 182.32682 * 16 14 2 19 19 C 1.39186 * 120.51904 * 172.92270 * 18 16 14 20 20 C 1.39593 * 118.20928 * 180.02562 * 19 18 16 21 21 O 1.35505 * 120.49530 * 180.02562 * 20 19 18 22 22 N 1.32675 * 119.01517 * 0.26696 * 20 19 18 23 23 C 1.31857 * 120.93928 * 359.44652 * 22 20 19 24 24 C 1.50701 * 119.00832 * 180.28670 * 23 22 20 25 25 C 1.52996 * 117.49575 * 9.02428 * 24 23 22 26 26 C 1.52996 * 117.49941 * 300.36605 * 24 23 22 27 27 N 1.31557 * 121.98925 * 0.57124 * 23 22 20 28 28 H 1.08991 * 109.46951 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46773 * 299.99815 * 1 2 3 30 30 H 1.08999 * 109.47071 * 59.99448 * 1 2 3 31 31 H 1.09002 * 109.47207 * 304.99768 * 4 2 1 32 32 H 1.09003 * 109.47632 * 64.99590 * 4 2 1 33 33 H 0.97001 * 119.99719 * 359.97438 * 5 4 2 34 34 H 0.97002 * 119.99961 * 180.02562 * 9 8 6 35 35 H 1.08997 * 109.47298 * 263.84199 * 15 14 2 36 36 H 1.09009 * 109.47021 * 23.84453 * 15 14 2 37 37 H 1.09003 * 109.46945 * 143.83845 * 15 14 2 38 38 H 1.07997 * 120.89249 * 359.97438 * 19 18 16 39 39 H 0.96704 * 114.00367 * 89.99087 * 21 20 19 40 40 H 1.09002 * 115.54947 * 154.69320 * 24 23 22 41 41 H 1.09005 * 117.50078 * 0.02562 * 25 24 23 42 42 H 1.09008 * 117.50292 * 145.01816 * 25 24 23 43 43 H 1.09004 * 117.49959 * 214.97581 * 26 24 23 44 44 H 1.09000 * 117.49871 * 359.97299 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5001 -0.8264 -1.1907 6 6 4.1837 -1.4388 -2.2069 7 1 3.6466 -1.8446 -3.0514 8 6 5.5673 -1.5380 -2.1516 9 7 6.2218 -1.0429 -1.1227 10 14 6.4998 -2.3740 -3.5375 11 1 6.8615 -1.3680 -4.5682 12 1 7.7356 -2.9961 -2.9978 13 1 5.6438 -3.4226 -4.1481 14 7 2.0185 -0.6906 1.1961 15 6 1.6645 -2.0931 1.4279 16 6 2.7933 -0.0356 2.0833 17 8 3.0520 1.1390 1.9128 18 6 3.3308 -0.7496 3.2686 19 6 4.2481 -0.1291 4.1117 20 6 4.7224 -0.8453 5.2120 21 8 5.6161 -0.2858 6.0632 22 7 4.2890 -2.0836 5.4093 23 6 3.4149 -2.6345 4.5901 24 6 2.9472 -4.0416 4.8591 25 6 3.3540 -4.6790 6.1891 26 6 4.0065 -5.1452 4.8853 27 7 2.9428 -1.9948 3.5419 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 1.6054 -1.7197 -1.2953 32 1 1.7516 -0.1582 -2.1371 33 1 3.9825 -0.4622 -0.4320 34 1 7.1886 -1.1119 -1.0842 35 1 0.8004 -2.1451 2.0902 36 1 1.4229 -2.5688 0.4773 37 1 2.5070 -2.6091 1.8886 38 1 4.5844 0.8790 3.9192 39 1 5.2115 0.1908 6.8010 40 1 1.9657 -4.2954 4.4586 41 1 3.9595 -4.0805 6.8697 42 1 2.6403 -5.3526 6.6636 43 1 3.7218 -6.1253 4.5024 44 1 5.0416 -4.8537 4.7075 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698831386.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:28 Heat of formation + Delta-G solvation = 39.466514 kcal Electronic energy + Delta-G solvation = -27626.342428 eV Core-core repulsion = 23774.856371 eV Total energy + Delta-G solvation = -3851.486057 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.52836 -39.57740 -38.09994 -36.90393 -36.41283 -34.13410 -33.35066 -31.61280 -31.42244 -30.03140 -26.63327 -25.88121 -25.48683 -24.89225 -22.82925 -22.49077 -22.21570 -20.64923 -19.31398 -18.80508 -18.15270 -17.06361 -16.63927 -16.22989 -15.92537 -15.65051 -15.54127 -15.03186 -14.72100 -14.58989 -14.03367 -13.63803 -13.59106 -13.22234 -12.76798 -12.54672 -12.40503 -12.30983 -12.25133 -12.04096 -11.82753 -11.66014 -11.48506 -10.98355 -10.84746 -10.77674 -10.73395 -10.60216 -10.52432 -10.44098 -10.09105 -10.03496 -9.68528 -9.35472 -9.07992 -8.85647 -8.25545 -6.88981 -5.72019 -3.01466 0.47072 0.68273 2.74280 2.99193 3.20846 3.45152 3.47477 3.49604 3.51846 3.60370 3.97982 4.21963 4.60795 4.66817 4.67346 4.78677 4.84328 4.97835 5.15653 5.30601 5.43453 5.46998 5.51781 5.54555 5.61584 5.66780 5.70946 5.89290 5.94818 5.97675 6.01842 6.04791 6.10222 6.18943 6.36032 6.49785 6.54163 6.69956 6.74529 6.98359 7.14452 7.61479 7.71659 7.85756 8.33149 8.45261 9.56728 10.14864 10.49774 11.50318 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010290 B = 0.004357 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2720.369566 B = 6425.464272 C = 7170.073149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.122 3.878 3 H 0.101 0.899 4 C 0.144 3.856 5 N -0.728 5.728 6 C -0.240 4.240 7 H 0.070 0.930 8 C -0.012 4.012 9 N -0.930 5.930 10 Si 0.906 3.094 11 H -0.290 1.290 12 H -0.292 1.292 13 H -0.282 1.282 14 N -0.568 5.568 15 C 0.079 3.921 16 C 0.570 3.430 17 O -0.527 6.527 18 C 0.164 3.836 19 C -0.187 4.187 20 C 0.365 3.635 21 O -0.470 6.470 22 N -0.528 5.528 23 C 0.366 3.634 24 C -0.102 4.102 25 C -0.154 4.154 26 C -0.153 4.153 27 N -0.483 5.483 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.023 0.977 32 H 0.031 0.969 33 H 0.385 0.615 34 H 0.254 0.746 35 H 0.050 0.950 36 H 0.066 0.934 37 H 0.104 0.896 38 H 0.166 0.834 39 H 0.407 0.593 40 H 0.134 0.866 41 H 0.108 0.892 42 H 0.100 0.900 43 H 0.105 0.895 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.040 -3.574 16.320 20.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.019 3.981 3 H 0.119 0.881 4 C 0.015 3.985 5 N -0.373 5.373 6 C -0.372 4.372 7 H 0.088 0.912 8 C -0.209 4.209 9 N -0.578 5.578 10 Si 0.737 3.263 11 H -0.217 1.217 12 H -0.219 1.219 13 H -0.208 1.208 14 N -0.299 5.299 15 C -0.064 4.064 16 C 0.354 3.646 17 O -0.402 6.402 18 C 0.018 3.982 19 C -0.212 4.212 20 C 0.176 3.824 21 O -0.277 6.277 22 N -0.253 5.253 23 C 0.099 3.901 24 C -0.122 4.122 25 C -0.191 4.191 26 C -0.191 4.191 27 N -0.202 5.202 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.041 0.959 32 H 0.048 0.952 33 H 0.219 0.781 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.085 0.915 37 H 0.122 0.878 38 H 0.183 0.817 39 H 0.266 0.734 40 H 0.152 0.848 41 H 0.127 0.873 42 H 0.119 0.881 43 H 0.123 0.877 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -10.729 -4.083 15.843 19.565 hybrid contribution 0.950 0.691 -0.439 1.254 sum -9.779 -3.393 15.404 18.559 Atomic orbital electron populations 1.22040 0.94729 1.02286 1.02101 1.21535 0.93630 0.98516 0.84392 0.88056 1.21020 0.87118 0.96901 0.93431 1.42293 0.99673 1.70154 1.25156 1.19204 0.89416 1.29436 0.99100 0.91204 1.24745 0.96451 1.01653 0.98018 1.69682 1.07123 1.50816 1.30227 0.86205 0.79525 0.79017 0.81521 1.21715 1.21853 1.20781 1.47559 1.47937 1.13074 1.21301 1.22273 1.02227 0.80776 1.01078 1.17642 0.79086 0.85967 0.81858 1.90783 1.58916 1.15184 1.75344 1.21607 0.92769 0.89539 0.94296 1.22950 0.97953 1.04021 0.96238 1.19245 0.86254 0.87478 0.89427 1.84766 1.30946 1.71167 1.40815 1.67482 1.12526 1.12115 1.33190 1.22019 0.87701 0.95353 0.85026 1.20660 1.00860 0.86316 1.04355 1.23033 1.03296 1.02364 0.90444 1.23028 0.97797 0.97376 1.00942 1.68662 1.27665 1.07333 1.16519 0.92195 0.92624 0.91235 0.95931 0.95176 0.78139 0.93582 0.93184 0.91495 0.87812 0.81667 0.73378 0.84830 0.87315 0.88138 0.87655 0.88384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.20 37.16 0.34 -1.64 16 2 C 0.12 2.13 2.79 -67.93 -0.19 1.94 16 3 H 0.10 1.97 6.90 -51.93 -0.36 1.61 16 4 C 0.14 2.93 5.52 -4.04 -0.02 2.91 16 5 N -0.73 -19.15 5.43 -59.90 -0.33 -19.47 16 6 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 7 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 8 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 9 N -0.93 -29.29 13.06 55.49 0.72 -28.56 16 10 Si 0.91 22.97 29.55 -169.99 -5.02 17.94 16 11 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 12 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 13 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 14 N -0.57 -10.01 2.24 -174.82 -0.39 -10.41 16 15 C 0.08 1.21 8.37 59.84 0.50 1.71 16 16 C 0.57 10.87 7.38 -12.05 -0.09 10.78 16 17 O -0.53 -11.27 15.77 5.39 0.09 -11.19 16 18 C 0.16 2.79 6.64 -82.69 -0.55 2.24 16 19 C -0.19 -2.88 9.68 -38.72 -0.37 -3.26 16 20 C 0.36 5.05 7.84 -16.68 -0.13 4.92 16 21 O -0.47 -5.24 13.58 -18.21 -0.25 -5.49 16 22 N -0.53 -7.42 9.35 -10.79 -0.10 -7.52 16 23 C 0.37 5.10 7.31 -157.34 -1.15 3.96 16 24 C -0.10 -1.09 6.23 -91.78 -0.57 -1.66 16 25 C -0.15 -1.34 10.01 -26.70 -0.27 -1.61 16 26 C -0.15 -1.51 10.24 -26.70 -0.27 -1.78 16 27 N -0.48 -7.42 6.12 -7.38 -0.05 -7.47 16 28 H 0.06 0.71 7.67 -51.93 -0.40 0.31 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 32 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.38 11.01 7.06 -40.82 -0.29 10.72 16 34 H 0.25 7.77 8.31 -40.82 -0.34 7.43 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 1.02 6.54 -51.92 -0.34 0.68 16 37 H 0.10 1.73 5.25 -51.94 -0.27 1.46 16 38 H 0.17 2.45 7.75 -52.49 -0.41 2.04 16 39 H 0.41 2.11 9.06 45.56 0.41 2.52 16 40 H 0.13 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.11 1.06 7.54 -51.93 -0.39 0.67 16 42 H 0.10 0.66 8.14 -51.92 -0.42 0.23 16 43 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 369.02 15.07 5.56 5.56 Total: -1.00 -35.73 369.02 -8.11 -43.85 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -5.33 Total: 11.77 kcal Atomic # 6 Polarization: 14.02 SS G_CDS: -3.02 Total: 11.00 kcal Atomic # 7 Polarization: -73.30 SS G_CDS: -0.14 Total: -73.44 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -0.16 Total: -16.68 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -5.02 Total: 17.94 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.73 -8.11 -43.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698831386.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.313 kcal (2) G-P(sol) polarization free energy of solvation -35.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds