Wall clock time and date at job start Tue Mar 31 2020 12:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46770 * 2 1 4 4 C 1.53001 * 109.46877 * 120.00017 * 2 1 3 5 5 N 1.46500 * 109.47149 * 175.00275 * 4 2 1 6 6 C 1.36939 * 120.00192 * 179.97438 * 5 4 2 7 7 H 1.07995 * 119.99760 * 359.97438 * 6 5 4 8 8 C 1.38806 * 119.99598 * 179.97438 * 6 5 4 9 9 N 1.31614 * 120.00861 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99556 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47239 * 0.02562 * 10 8 6 12 12 H 1.48498 * 109.46899 * 120.00166 * 10 8 6 13 13 H 1.48498 * 109.47423 * 240.00017 * 10 8 6 14 14 N 1.46501 * 109.47268 * 240.00040 * 2 1 3 15 15 C 1.46497 * 120.00095 * 300.00364 * 14 2 1 16 16 C 1.34774 * 119.99563 * 120.00148 * 14 2 1 17 17 O 1.21476 * 120.00742 * 5.55584 * 16 14 2 18 18 C 1.48458 * 119.99855 * 185.55726 * 16 14 2 19 19 C 1.39178 * 120.51791 * 186.35956 * 18 16 14 20 20 C 1.39606 * 118.20640 * 180.02562 * 19 18 16 21 21 O 1.35505 * 120.49249 * 180.02562 * 20 19 18 22 22 N 1.32668 * 119.01158 * 359.97438 * 20 19 18 23 23 C 1.31860 * 120.94608 * 359.97438 * 22 20 19 24 24 C 1.50701 * 119.01169 * 179.97438 * 23 22 20 25 25 C 1.52998 * 117.49472 * 8.75070 * 24 23 22 26 26 C 1.52993 * 117.49795 * 300.09279 * 24 23 22 27 27 N 1.31561 * 121.98688 * 359.71666 * 23 22 20 28 28 H 1.08997 * 109.47832 * 300.00107 * 1 2 3 29 29 H 1.09004 * 109.47067 * 59.99948 * 1 2 3 30 30 H 1.08995 * 109.47323 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47003 * 295.00230 * 4 2 1 32 32 H 1.08995 * 109.47021 * 55.00524 * 4 2 1 33 33 H 0.97000 * 119.99669 * 359.97438 * 5 4 2 34 34 H 0.97001 * 120.00753 * 179.97438 * 9 8 6 35 35 H 1.08993 * 109.47746 * 95.39362 * 15 14 2 36 36 H 1.08996 * 109.47080 * 215.40027 * 15 14 2 37 37 H 1.09005 * 109.46884 * 335.39162 * 15 14 2 38 38 H 1.07997 * 120.89929 * 359.97438 * 19 18 16 39 39 H 0.96698 * 114.00096 * 89.99667 * 21 20 19 40 40 H 1.09002 * 115.55116 * 154.41504 * 24 23 22 41 41 H 1.09006 * 117.49861 * 359.97438 * 25 24 23 42 42 H 1.09001 * 117.50164 * 145.01698 * 25 24 23 43 43 H 1.09003 * 117.49823 * 214.97619 * 26 24 23 44 44 H 1.09003 * 117.50111 * 359.97060 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.5000 -0.8264 1.1907 6 6 4.1838 -1.4379 2.2074 7 1 3.6468 -1.8424 3.0525 8 6 5.5671 -1.5379 2.1515 9 7 6.2217 -1.0446 1.1217 10 14 6.5000 -2.3715 3.5387 11 1 5.5397 -2.8372 4.5713 12 1 7.2509 -3.5345 3.0014 13 1 7.4510 -1.4061 4.1460 14 7 2.0184 -0.6906 -1.1962 15 6 1.6644 -2.0931 -1.4281 16 6 2.7932 -0.0355 -2.0832 17 8 3.1701 1.0940 -1.8429 18 6 3.1862 -0.6944 -3.3543 19 6 4.0908 -0.0827 -4.2171 20 6 4.4259 -0.7450 -5.3995 21 8 5.3023 -0.1920 -6.2727 22 7 3.8744 -1.9242 -5.6551 23 6 3.0217 -2.4711 -4.8110 24 6 2.4208 -3.8121 -5.1452 25 6 2.9905 -4.5605 -6.3519 26 6 1.6034 -3.9184 -6.4341 27 7 2.6835 -1.8838 -3.6834 28 1 -0.3635 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.7515 -0.1583 2.1369 32 1 1.6054 -1.7198 1.2951 33 1 3.9823 -0.4628 0.4317 34 1 7.1884 -1.1141 1.0828 35 1 0.7920 -2.1449 -2.0794 36 1 2.5020 -2.6058 -1.9011 37 1 1.4360 -2.5724 -0.4761 38 1 4.5213 0.8787 -3.9788 39 1 6.2244 -0.4344 -6.1112 40 1 2.0949 -4.4071 -4.2920 41 1 3.7997 -4.0827 -6.9043 42 1 3.0391 -5.6478 -6.2928 43 1 0.7399 -4.5836 -6.4291 44 1 1.4999 -3.0184 -7.0402 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698831387.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:31 Heat of formation + Delta-G solvation = 37.155352 kcal Electronic energy + Delta-G solvation = -27526.073991 eV Core-core repulsion = 23674.487715 eV Total energy + Delta-G solvation = -3851.586276 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.54192 -39.58247 -38.11160 -36.93452 -36.41290 -34.14172 -33.35613 -31.62928 -31.43905 -30.03837 -26.64221 -25.90042 -25.49433 -24.91751 -22.83670 -22.55061 -22.22687 -20.66451 -19.31296 -18.82099 -18.16764 -17.07558 -16.62189 -16.17860 -15.97518 -15.71083 -15.53500 -15.12344 -14.68302 -14.61318 -14.03926 -13.67518 -13.59132 -13.23221 -12.76787 -12.56986 -12.41086 -12.31082 -12.24994 -12.02518 -11.82393 -11.71057 -11.48508 -11.03816 -10.86464 -10.78758 -10.76235 -10.65556 -10.56983 -10.46723 -10.09921 -10.01850 -9.70023 -9.42097 -9.12275 -8.87346 -8.26851 -6.89533 -5.73417 -3.02577 0.44441 0.65854 2.76046 2.92159 3.21666 3.43314 3.48592 3.49681 3.51137 3.53895 3.94960 4.20394 4.59361 4.62741 4.64307 4.75709 4.79754 4.94982 5.14778 5.29613 5.42843 5.43415 5.45191 5.53472 5.60198 5.63040 5.69104 5.85948 5.90793 5.97249 6.01408 6.02357 6.10208 6.18903 6.35249 6.42370 6.51466 6.68173 6.72433 6.97604 7.12906 7.61087 7.71027 7.83720 8.33130 8.44126 9.55806 10.14467 10.49679 11.48963 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011400 B = 0.003987 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2455.621448 B = 7021.359014 C = 7585.637724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.123 3.877 3 H 0.101 0.899 4 C 0.144 3.856 5 N -0.728 5.728 6 C -0.238 4.238 7 H 0.070 0.930 8 C -0.013 4.013 9 N -0.930 5.930 10 Si 0.905 3.095 11 H -0.280 1.280 12 H -0.293 1.293 13 H -0.292 1.292 14 N -0.570 5.570 15 C 0.092 3.908 16 C 0.569 3.431 17 O -0.522 6.522 18 C 0.163 3.837 19 C -0.187 4.187 20 C 0.365 3.635 21 O -0.473 6.473 22 N -0.528 5.528 23 C 0.365 3.635 24 C -0.101 4.101 25 C -0.153 4.153 26 C -0.155 4.155 27 N -0.484 5.484 28 H 0.069 0.931 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.030 0.970 32 H 0.023 0.977 33 H 0.386 0.614 34 H 0.253 0.747 35 H 0.053 0.947 36 H 0.088 0.912 37 H 0.067 0.933 38 H 0.166 0.834 39 H 0.411 0.589 40 H 0.135 0.865 41 H 0.109 0.891 42 H 0.101 0.899 43 H 0.104 0.896 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.016 -4.218 -15.396 18.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.020 3.980 3 H 0.119 0.881 4 C 0.015 3.985 5 N -0.373 5.373 6 C -0.370 4.370 7 H 0.088 0.912 8 C -0.209 4.209 9 N -0.579 5.579 10 Si 0.737 3.263 11 H -0.206 1.206 12 H -0.220 1.220 13 H -0.219 1.219 14 N -0.301 5.301 15 C -0.050 4.050 16 C 0.353 3.647 17 O -0.397 6.397 18 C 0.017 3.983 19 C -0.212 4.212 20 C 0.176 3.824 21 O -0.281 6.281 22 N -0.253 5.253 23 C 0.099 3.901 24 C -0.121 4.121 25 C -0.191 4.191 26 C -0.193 4.193 27 N -0.203 5.203 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.048 0.952 32 H 0.041 0.959 33 H 0.220 0.780 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.106 0.894 37 H 0.085 0.915 38 H 0.184 0.816 39 H 0.271 0.729 40 H 0.153 0.847 41 H 0.127 0.873 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.612 -4.225 -15.510 19.262 hybrid contribution 1.730 0.265 0.881 1.959 sum -8.883 -3.960 -14.629 17.567 Atomic orbital electron populations 1.22048 0.94731 1.02335 1.02100 1.21524 0.93533 0.98506 0.84446 0.88082 1.21012 0.87134 0.96865 0.93444 1.42317 0.99687 1.70145 1.25150 1.19261 0.89439 1.29236 0.99036 0.91162 1.24739 0.96446 1.01713 0.98037 1.69698 1.07003 1.50942 1.30240 0.86140 0.79961 0.78729 0.81496 1.20553 1.21985 1.21882 1.47539 1.48377 1.12924 1.21270 1.22009 1.01626 0.80510 1.00882 1.17651 0.79239 0.85452 0.82326 1.90802 1.53977 1.18430 1.76472 1.21620 0.91825 0.89973 0.94924 1.22977 1.00555 1.04276 0.93353 1.19255 0.90433 0.86981 0.85761 1.84696 1.20451 1.69371 1.53580 1.67496 1.11859 1.11559 1.34426 1.21970 0.88752 0.94726 0.84699 1.20666 1.05337 0.91631 0.94431 1.23043 0.97485 0.99379 0.99161 1.22998 0.95360 1.03349 0.97595 1.68653 1.25123 1.08841 1.17655 0.91212 0.92645 0.92157 0.95202 0.95948 0.77986 0.93688 0.92832 0.89398 0.91462 0.81636 0.72933 0.84736 0.87253 0.88026 0.87790 0.88631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.19 37.16 0.34 -1.63 16 2 C 0.12 2.12 2.79 -67.93 -0.19 1.93 16 3 H 0.10 1.95 6.91 -51.93 -0.36 1.59 16 4 C 0.14 2.91 5.52 -4.04 -0.02 2.89 16 5 N -0.73 -18.99 5.43 -59.91 -0.33 -19.32 16 6 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 7 H 0.07 1.93 7.83 -52.49 -0.41 1.51 16 8 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 9 N -0.93 -28.88 13.06 55.49 0.72 -28.16 16 10 Si 0.91 22.71 29.55 -169.99 -5.02 17.68 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 13 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 14 N -0.57 -9.98 2.24 -174.82 -0.39 -10.37 16 15 C 0.09 1.40 8.16 59.85 0.49 1.89 16 16 C 0.57 10.81 7.37 -12.05 -0.09 10.72 16 17 O -0.52 -11.28 15.78 5.39 0.08 -11.20 16 18 C 0.16 2.72 6.59 -82.69 -0.54 2.18 16 19 C -0.19 -2.83 9.68 -38.72 -0.37 -3.21 16 20 C 0.36 4.94 7.84 -16.68 -0.13 4.81 16 21 O -0.47 -5.15 13.58 -18.21 -0.25 -5.40 16 22 N -0.53 -7.24 9.35 -10.79 -0.10 -7.34 16 23 C 0.37 4.96 7.31 -157.34 -1.15 3.81 16 24 C -0.10 -1.04 6.23 -91.78 -0.57 -1.61 16 25 C -0.15 -1.32 10.01 -26.70 -0.27 -1.58 16 26 C -0.15 -1.29 10.24 -26.70 -0.27 -1.56 16 27 N -0.48 -7.26 6.26 -7.38 -0.05 -7.31 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.71 7.67 -51.93 -0.40 0.31 16 31 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.02 0.44 6.86 -51.93 -0.36 0.09 16 33 H 0.39 10.95 7.06 -40.82 -0.29 10.66 16 34 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 35 H 0.05 0.69 8.02 -51.93 -0.42 0.27 16 36 H 0.09 1.44 5.79 -51.93 -0.30 1.13 16 37 H 0.07 1.01 6.54 -51.93 -0.34 0.68 16 38 H 0.17 2.42 7.74 -52.49 -0.41 2.02 16 39 H 0.41 2.47 9.06 45.56 0.41 2.88 16 40 H 0.13 1.25 8.14 -51.93 -0.42 0.82 16 41 H 0.11 1.06 7.53 -51.93 -0.39 0.67 16 42 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 369.30 15.07 5.57 5.57 Total: -1.00 -35.13 369.30 -8.14 -43.27 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: -5.35 Total: 11.37 kcal Atomic # 6 Polarization: 14.24 SS G_CDS: -3.03 Total: 11.21 kcal Atomic # 7 Polarization: -72.36 SS G_CDS: -0.14 Total: -72.50 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.16 Total: -16.60 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.13 -8.14 -43.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698831387.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.424 kcal (2) G-P(sol) polarization free energy of solvation -35.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds