Wall clock time and date at job start Tue Mar 31 2020 12:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 C 1.52999 * 109.47114 * 239.99813 * 2 1 3 5 5 C 1.52997 * 109.47080 * 174.99701 * 4 2 1 6 6 N 1.46503 * 109.47297 * 180.02562 * 5 4 2 7 7 C 1.36935 * 120.00080 * 180.02562 * 6 5 4 8 8 H 1.07998 * 120.00128 * 359.97438 * 7 6 5 9 9 C 1.38813 * 119.99818 * 179.97438 * 7 6 5 10 10 N 1.31618 * 120.00038 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00060 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47162 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.47345 * 120.00013 * 11 9 7 14 14 H 1.48497 * 109.47349 * 240.00296 * 11 9 7 15 15 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 16 16 C 1.34777 * 119.99828 * 274.72131 * 15 2 1 17 17 O 1.21593 * 119.99949 * 0.28071 * 16 15 2 18 18 C 1.47533 * 119.99975 * 180.27938 * 16 15 2 19 19 C 1.39796 * 120.98330 * 359.71784 * 18 16 15 20 20 N 1.32189 * 118.98653 * 179.73899 * 19 18 16 21 21 C 1.31942 * 121.13653 * 0.53486 * 20 19 18 22 22 C 1.50693 * 118.90263 * 179.72487 * 21 20 19 23 23 C 1.52997 * 117.49992 * 8.76363 * 22 21 20 24 24 C 1.53007 * 117.49768 * 300.10539 * 22 21 20 25 25 N 1.31728 * 122.19218 * 359.74340 * 21 20 19 26 26 C 1.32768 * 120.87538 * 359.97438 * 25 21 20 27 27 O 1.35286 * 120.61489 * 179.97438 * 26 25 21 28 28 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 29 29 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 30 30 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47492 * 295.00122 * 4 2 1 32 32 H 1.09007 * 109.47243 * 54.99904 * 4 2 1 33 33 H 1.09002 * 109.47641 * 299.99883 * 5 4 2 34 34 H 1.08998 * 109.46968 * 60.00255 * 5 4 2 35 35 H 0.96998 * 119.99912 * 359.97438 * 6 5 4 36 36 H 0.97003 * 120.00102 * 179.97438 * 10 9 7 37 37 H 0.97001 * 120.00384 * 95.00578 * 15 2 1 38 38 H 1.08010 * 120.50797 * 0.02562 * 19 18 16 39 39 H 1.09002 * 115.55101 * 154.43620 * 22 21 20 40 40 H 1.09005 * 117.50025 * 0.02562 * 23 22 21 41 41 H 1.09004 * 117.50142 * 145.01899 * 23 22 21 42 42 H 1.08994 * 117.49556 * 214.98148 * 24 22 21 43 43 H 1.08992 * 117.49727 * 359.97438 * 24 22 21 44 44 H 0.96696 * 114.00223 * 270.03158 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5647 -0.6133 -1.3137 6 7 4.0531 -1.3034 -2.5102 7 6 5.3952 -1.3400 -2.7796 8 1 6.0936 -0.8598 -2.1104 9 6 5.8579 -1.9944 -3.9130 10 7 5.0066 -2.5792 -4.7289 11 14 7.6886 -2.0438 -4.2811 12 1 8.4271 -1.3167 -3.2175 13 1 8.1469 -3.4557 -4.3245 14 1 7.9473 -1.3988 -5.5934 15 7 2.0183 -0.6906 1.1962 16 6 2.1523 -0.0169 2.3557 17 8 1.8631 1.1629 2.4103 18 6 2.6499 -0.7109 3.5588 19 6 2.9829 -2.0681 3.5207 20 7 3.4299 -2.6491 4.6207 21 6 3.5549 -1.9731 5.7469 22 6 4.0637 -2.6872 6.9724 23 6 4.6011 -4.1080 6.7900 24 6 3.2541 -3.8818 7.4811 25 7 3.2493 -0.6948 5.8357 26 6 2.7978 -0.0273 4.7805 27 8 2.4852 1.2853 4.8778 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.7516 -1.7715 -1.2056 32 1 1.6053 -0.2618 -2.1370 33 1 3.8532 0.4370 -1.3574 34 1 3.9994 -1.0727 -0.4260 35 1 3.4258 -1.7350 -3.1111 36 1 5.3299 -3.0361 -5.5212 37 1 2.2491 -1.6318 1.1526 38 1 2.8808 -2.6322 2.6053 39 1 4.5511 -2.0563 7.7158 40 1 4.5870 -4.5261 5.7834 41 1 5.4419 -4.4121 7.4136 42 1 3.2092 -4.0369 8.5590 43 1 2.3533 -4.1507 6.9295 44 1 1.5658 1.4533 5.1259 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699140181.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:33 Heat of formation + Delta-G solvation = 8.526377 kcal Electronic energy + Delta-G solvation = -26254.672823 eV Core-core repulsion = 22401.845101 eV Total energy + Delta-G solvation = -3852.827722 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.77020 -39.72498 -38.26245 -37.02310 -36.51383 -34.43066 -33.83782 -32.46129 -31.44210 -30.35295 -27.92565 -26.28367 -24.68181 -24.06554 -22.72752 -22.50016 -21.68222 -21.08704 -20.60126 -19.02661 -18.45601 -17.95744 -17.05545 -16.79603 -16.12554 -15.78508 -15.22574 -14.98233 -14.73338 -14.55697 -14.34258 -14.09631 -13.86868 -13.51418 -13.35983 -12.89702 -12.69002 -12.51481 -12.42959 -11.93986 -11.89137 -11.60052 -11.32920 -11.25939 -11.06602 -10.91400 -10.84799 -10.84047 -10.68891 -10.60594 -10.04128 -9.93745 -9.75874 -9.73547 -9.61053 -9.11782 -8.89593 -6.95576 -5.79540 -3.08407 0.01135 0.56117 2.56292 2.78666 3.00066 3.21969 3.37478 3.41933 3.48129 3.50124 3.69662 3.86667 4.33759 4.44401 4.47384 4.53125 4.59083 4.60561 4.88178 4.94591 5.10105 5.17506 5.27032 5.28763 5.44145 5.51965 5.65272 5.66024 5.68212 5.75266 5.86623 5.86722 5.95450 6.17279 6.21413 6.28488 6.40618 6.45356 6.76121 6.81047 7.08296 7.35662 7.61074 7.68650 8.05508 8.39485 9.50854 10.07787 10.42472 11.43374 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011030 B = 0.002981 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2537.929707 B = 9391.375349 C =11042.654270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.146 3.854 3 H 0.092 0.908 4 C -0.136 4.136 5 C 0.153 3.847 6 N -0.734 5.734 7 C -0.239 4.239 8 H 0.070 0.930 9 C -0.014 4.014 10 N -0.934 5.934 11 Si 0.906 3.094 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.291 1.291 15 N -0.712 5.712 16 C 0.570 3.430 17 O -0.521 6.521 18 C -0.266 4.266 19 C 0.205 3.795 20 N -0.524 5.524 21 C 0.393 3.607 22 C -0.111 4.111 23 C -0.149 4.149 24 C -0.152 4.152 25 N -0.540 5.540 26 C 0.423 3.577 27 O -0.452 6.452 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.019 0.981 34 H 0.017 0.983 35 H 0.383 0.617 36 H 0.255 0.745 37 H 0.399 0.601 38 H 0.179 0.821 39 H 0.133 0.867 40 H 0.114 0.886 41 H 0.103 0.897 42 H 0.105 0.895 43 H 0.098 0.902 44 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.171 -1.111 23.484 25.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.042 3.958 3 H 0.110 0.890 4 C -0.174 4.174 5 C 0.026 3.974 6 N -0.378 5.378 7 C -0.371 4.371 8 H 0.088 0.912 9 C -0.210 4.210 10 N -0.582 5.582 11 Si 0.738 3.262 12 H -0.205 1.205 13 H -0.218 1.218 14 H -0.218 1.218 15 N -0.364 5.364 16 C 0.354 3.646 17 O -0.397 6.397 18 C -0.275 4.275 19 C 0.038 3.962 20 N -0.239 5.239 21 C 0.128 3.872 22 C -0.131 4.131 23 C -0.187 4.187 24 C -0.190 4.190 25 N -0.264 5.264 26 C 0.234 3.766 27 O -0.260 6.260 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.037 0.963 34 H 0.035 0.965 35 H 0.217 0.783 36 H 0.065 0.935 37 H 0.234 0.766 38 H 0.196 0.804 39 H 0.151 0.849 40 H 0.132 0.868 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.116 0.884 44 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -9.339 -0.474 24.130 25.879 hybrid contribution 0.239 -0.090 -1.210 1.237 sum -9.099 -0.564 22.920 24.666 Atomic orbital electron populations 1.22161 0.95204 1.02089 1.02428 1.21041 0.93664 0.97817 0.83281 0.89029 1.22082 0.98112 1.00839 0.96352 1.20637 0.90303 0.95735 0.90747 1.42365 1.05409 1.64972 1.25051 1.19271 0.83813 1.28446 1.05527 0.91210 1.24741 0.97746 1.00862 0.97634 1.69666 1.32714 1.40773 1.15082 0.86122 0.85049 0.77250 0.77825 1.20547 1.21809 1.21808 1.46020 1.66801 1.14036 1.09580 1.17516 0.78186 0.86441 0.82410 1.90815 1.49708 1.14664 1.84552 1.22039 1.11143 0.96802 0.97541 1.23520 0.85854 0.90100 0.96727 1.68137 1.16344 1.40183 0.99265 1.22147 0.87800 0.85120 0.92169 1.20741 1.06427 0.90909 0.95005 1.23098 0.97028 0.94981 1.03581 1.23021 0.96257 0.98616 1.01131 1.67802 1.16214 1.09747 1.32663 1.19404 0.86598 0.84142 0.86451 1.84668 1.34629 1.15941 1.90726 0.92416 0.91311 0.92451 0.91257 0.89995 0.96349 0.96519 0.78300 0.93544 0.76558 0.80418 0.84946 0.86798 0.87854 0.87689 0.88366 0.72618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 9.49 37.16 0.35 -1.35 16 2 C 0.15 1.84 2.58 -67.93 -0.17 1.66 16 3 H 0.09 1.32 7.57 -51.93 -0.39 0.93 16 4 C -0.14 -1.97 4.87 -26.73 -0.13 -2.10 16 5 C 0.15 2.99 6.15 -4.04 -0.02 2.96 16 6 N -0.73 -18.33 5.60 -59.91 -0.34 -18.67 16 7 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 10 N -0.93 -28.08 13.06 55.49 0.72 -27.35 16 11 Si 0.91 22.49 29.55 -169.99 -5.02 17.47 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 13 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 14 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 15 N -0.71 -8.29 4.49 -54.85 -0.25 -8.54 16 16 C 0.57 7.45 7.75 -12.47 -0.10 7.35 16 17 O -0.52 -8.24 14.98 -15.86 -0.24 -8.48 16 18 C -0.27 -3.13 5.92 -104.57 -0.62 -3.75 16 19 C 0.20 2.10 10.80 -16.82 -0.18 1.92 16 20 N -0.52 -5.74 9.31 -10.44 -0.10 -5.83 16 21 C 0.39 4.37 7.31 -157.13 -1.15 3.22 16 22 C -0.11 -0.92 6.23 -91.77 -0.57 -1.49 16 23 C -0.15 -1.03 10.01 -26.70 -0.27 -1.29 16 24 C -0.15 -0.97 10.24 -26.69 -0.27 -1.24 16 25 N -0.54 -6.62 10.34 -10.47 -0.11 -6.73 16 26 C 0.42 5.24 7.85 -16.19 -0.13 5.11 16 27 O -0.45 -5.34 11.81 -38.70 -0.46 -5.79 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.02 0.33 7.75 -51.93 -0.40 -0.08 16 35 H 0.38 9.96 7.67 -40.82 -0.31 9.65 16 36 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 37 H 0.40 3.89 6.73 -40.82 -0.27 3.62 16 38 H 0.18 1.33 6.53 -52.48 -0.34 0.99 16 39 H 0.13 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.11 0.91 7.53 -51.93 -0.39 0.52 16 41 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.41 2.91 9.06 45.56 0.41 3.32 16 LS Contribution 375.52 15.07 5.66 5.66 Total: -1.00 -35.19 375.52 -9.11 -44.30 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -5.48 Total: 10.34 kcal Atomic # 6 Polarization: 7.14 SS G_CDS: -3.51 Total: 3.63 kcal Atomic # 7 Polarization: -67.06 SS G_CDS: -0.06 Total: -67.12 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: -0.69 Total: -14.28 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.19 -9.11 -44.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699140181.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.829 kcal (2) G-P(sol) polarization free energy of solvation -35.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds