Wall clock time and date at job start Tue Mar 31 2020 12:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.52997 * 109.47127 * 120.00132 * 2 1 3 5 5 C 1.53001 * 109.47049 * 185.00237 * 4 2 1 6 6 N 1.46496 * 109.46907 * 180.02562 * 5 4 2 7 7 C 1.36940 * 119.99895 * 179.97438 * 6 5 4 8 8 H 1.07998 * 119.99861 * 0.02562 * 7 6 5 9 9 C 1.38814 * 120.00211 * 179.97438 * 7 6 5 10 10 N 1.31621 * 119.99686 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00151 * 180.02562 * 9 7 6 12 12 H 1.48492 * 109.46915 * 90.00200 * 11 9 7 13 13 H 1.48504 * 109.46724 * 210.00426 * 11 9 7 14 14 H 1.48500 * 109.46829 * 330.00175 * 11 9 7 15 15 N 1.46500 * 109.47249 * 240.00642 * 2 1 3 16 16 C 1.34770 * 120.00256 * 84.99846 * 15 2 1 17 17 O 1.21592 * 120.00149 * 359.97438 * 16 15 2 18 18 C 1.47540 * 119.99984 * 180.02562 * 16 15 2 19 19 C 1.39797 * 120.97750 * 359.71883 * 18 16 15 20 20 N 1.32197 * 118.97631 * 179.74365 * 19 18 16 21 21 C 1.31934 * 121.13969 * 0.52497 * 20 19 18 22 22 C 1.50705 * 118.90160 * 179.72773 * 21 20 19 23 23 C 1.52997 * 117.49912 * 8.76902 * 22 21 20 24 24 C 1.52997 * 117.49615 * 300.10648 * 22 21 20 25 25 N 1.31731 * 122.19661 * 359.74560 * 21 20 19 26 26 C 1.32767 * 120.87342 * 359.97438 * 25 21 20 27 27 O 1.35279 * 120.61644 * 179.97438 * 26 25 21 28 28 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 30 30 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 31 31 H 1.08998 * 109.47192 * 305.00392 * 4 2 1 32 32 H 1.08998 * 109.46934 * 65.00238 * 4 2 1 33 33 H 1.08998 * 109.47250 * 300.00119 * 5 4 2 34 34 H 1.08998 * 109.47252 * 60.00195 * 5 4 2 35 35 H 0.96998 * 120.00501 * 359.97438 * 6 5 4 36 36 H 0.97001 * 119.99967 * 180.02562 * 10 9 7 37 37 H 0.97005 * 119.99374 * 264.99912 * 15 2 1 38 38 H 1.07994 * 120.51669 * 359.97438 * 19 18 16 39 39 H 1.09005 * 115.55027 * 154.43808 * 22 21 20 40 40 H 1.09009 * 117.49773 * 359.97438 * 23 22 21 41 41 H 1.08992 * 117.50318 * 145.02059 * 23 22 21 42 42 H 1.09004 * 117.49701 * 214.97637 * 24 22 21 43 43 H 1.08994 * 117.50041 * 359.97438 * 24 22 21 44 44 H 0.96700 * 114.00043 * 270.02770 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5649 -0.6132 1.3137 6 7 4.0532 -1.3044 2.5095 7 6 5.3954 -1.3413 2.7788 8 1 6.0938 -0.8604 2.1099 9 6 5.8581 -1.9957 3.9122 10 7 5.0069 -2.5812 4.7277 11 14 7.6889 -2.0454 4.2800 12 1 8.0589 -0.8711 5.1102 13 1 8.0121 -3.2938 5.0164 14 1 8.4508 -2.0108 3.0059 15 7 2.0184 -0.6905 -1.1962 16 6 2.1471 -0.0181 -2.3571 17 8 1.8575 1.1616 -2.4118 18 6 2.6384 -0.7136 -3.5619 19 6 2.9818 -2.0682 -3.5210 20 7 3.4129 -2.6532 -4.6254 21 6 3.5320 -1.9786 -5.7530 22 6 4.0343 -2.6944 -6.9803 23 6 4.1840 -4.2149 -6.8997 24 6 5.4277 -3.3225 -6.9111 25 7 3.2267 -0.7003 -5.8417 26 6 2.7806 -0.0314 -4.7851 27 8 2.4692 1.2815 -4.8820 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.6054 -0.2618 2.1369 32 1 1.7517 -1.7715 1.2055 33 1 3.9995 -1.0727 0.4259 34 1 3.8532 0.4370 1.3574 35 1 3.4260 -1.7359 3.1105 36 1 5.3302 -3.0382 5.5198 37 1 2.2491 -1.6317 -1.1527 38 1 2.8927 -2.6290 -2.6025 39 1 3.7206 -2.2694 -7.9338 40 1 3.9195 -4.6975 -5.9588 41 1 3.9692 -4.7903 -7.8002 42 1 6.0306 -3.3112 -7.8192 43 1 5.9812 -3.2177 -5.9780 44 1 3.2086 1.8759 -4.6949 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699140182.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:36 Heat of formation + Delta-G solvation = 8.217203 kcal Electronic energy + Delta-G solvation = -26271.170321 eV Core-core repulsion = 22418.329192 eV Total energy + Delta-G solvation = -3852.841128 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.76589 -39.72240 -38.25131 -37.01241 -36.51483 -34.43896 -33.83475 -32.45995 -31.44954 -30.35073 -27.92580 -26.27806 -24.67709 -24.07250 -22.71146 -22.49835 -21.68426 -21.09310 -20.59797 -19.01315 -18.44902 -17.96148 -17.05620 -16.78460 -16.21334 -15.66214 -15.22930 -14.99451 -14.76240 -14.59756 -14.28160 -14.10277 -13.87289 -13.52475 -13.36894 -12.89365 -12.69416 -12.47594 -12.43779 -11.92791 -11.88612 -11.59203 -11.32168 -11.26250 -11.07733 -10.90918 -10.84591 -10.83537 -10.69217 -10.62442 -10.08818 -9.93339 -9.76336 -9.73808 -9.60856 -9.11511 -8.90674 -6.97278 -5.80952 -3.10012 0.01461 0.56329 2.56755 2.78504 3.01986 3.21226 3.38959 3.40790 3.46032 3.47501 3.70534 3.87040 4.34046 4.45397 4.47834 4.52329 4.59007 4.61404 4.88427 4.94857 5.11172 5.18251 5.28905 5.30446 5.43742 5.50875 5.66769 5.67325 5.69384 5.76154 5.86591 5.87178 5.96481 6.16917 6.22464 6.27562 6.40750 6.45569 6.74085 6.79365 7.08954 7.35878 7.61376 7.65836 8.05688 8.38028 9.49224 10.06367 10.40913 11.41872 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010583 B = 0.003060 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2645.125438 B = 9147.133533 C =10953.393720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.147 3.853 3 H 0.091 0.909 4 C -0.136 4.136 5 C 0.154 3.846 6 N -0.734 5.734 7 C -0.241 4.241 8 H 0.069 0.931 9 C -0.013 4.013 10 N -0.933 5.933 11 Si 0.907 3.093 12 H -0.289 1.289 13 H -0.291 1.291 14 H -0.282 1.282 15 N -0.712 5.712 16 C 0.570 3.430 17 O -0.521 6.521 18 C -0.266 4.266 19 C 0.205 3.795 20 N -0.524 5.524 21 C 0.393 3.607 22 C -0.111 4.111 23 C -0.150 4.150 24 C -0.152 4.152 25 N -0.540 5.540 26 C 0.423 3.577 27 O -0.454 6.454 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.017 0.983 34 H 0.018 0.982 35 H 0.384 0.616 36 H 0.255 0.745 37 H 0.399 0.601 38 H 0.179 0.821 39 H 0.132 0.868 40 H 0.113 0.887 41 H 0.103 0.897 42 H 0.105 0.895 43 H 0.099 0.901 44 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.210 -0.126 -22.411 23.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.043 3.957 3 H 0.109 0.891 4 C -0.174 4.174 5 C 0.027 3.973 6 N -0.378 5.378 7 C -0.372 4.372 8 H 0.087 0.913 9 C -0.209 4.209 10 N -0.582 5.582 11 Si 0.738 3.262 12 H -0.217 1.217 13 H -0.217 1.217 14 H -0.208 1.208 15 N -0.364 5.364 16 C 0.354 3.646 17 O -0.398 6.398 18 C -0.275 4.275 19 C 0.038 3.962 20 N -0.240 5.240 21 C 0.128 3.872 22 C -0.131 4.131 23 C -0.187 4.187 24 C -0.190 4.190 25 N -0.264 5.264 26 C 0.234 3.766 27 O -0.262 6.262 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.035 0.965 34 H 0.036 0.964 35 H 0.217 0.783 36 H 0.065 0.935 37 H 0.234 0.766 38 H 0.196 0.804 39 H 0.150 0.850 40 H 0.132 0.868 41 H 0.121 0.879 42 H 0.124 0.876 43 H 0.118 0.882 44 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -6.499 0.209 -23.348 24.237 hybrid contribution 0.978 0.116 1.403 1.715 sum -5.521 0.325 -21.945 22.631 Atomic orbital electron populations 1.22170 0.95208 1.02140 1.02488 1.21036 0.93708 0.97738 0.83248 0.89061 1.22084 0.98084 1.00879 0.96361 1.20628 0.90314 0.95656 0.90750 1.42360 1.05393 1.64928 1.25119 1.19216 0.83811 1.28596 1.05601 0.91285 1.24743 0.97734 1.00811 0.97628 1.69656 1.32826 1.40622 1.15080 0.86192 0.85038 0.77085 0.77899 1.21669 1.21698 1.20770 1.46021 1.66837 1.14098 1.09488 1.17515 0.78192 0.86533 0.82311 1.90815 1.49509 1.14869 1.84561 1.22039 1.11230 0.97833 0.96446 1.23518 0.86019 0.89910 0.96733 1.68135 1.17095 1.39389 0.99337 1.22152 0.87789 0.85007 0.92286 1.20741 1.02421 0.95768 0.94181 1.23087 1.00663 0.90271 1.04710 1.23041 0.89583 1.02217 1.04148 1.67807 1.15643 1.10470 1.32526 1.19400 0.84753 0.86690 0.85725 1.84631 1.38854 1.10925 1.91785 0.92447 0.91318 0.92319 0.89994 0.91247 0.96549 0.96405 0.78282 0.93469 0.76554 0.80422 0.84980 0.86849 0.87912 0.87647 0.88205 0.72377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.79 9.48 37.16 0.35 -1.44 16 2 C 0.15 1.85 2.57 -67.93 -0.17 1.68 16 3 H 0.09 1.29 7.58 -51.93 -0.39 0.90 16 4 C -0.14 -1.96 4.87 -26.73 -0.13 -2.09 16 5 C 0.15 2.94 6.15 -4.04 -0.02 2.92 16 6 N -0.73 -18.11 5.60 -59.91 -0.34 -18.45 16 7 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 10 N -0.93 -27.87 13.06 55.49 0.72 -27.14 16 11 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 13 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 14 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 15 N -0.71 -8.31 4.49 -54.84 -0.25 -8.55 16 16 C 0.57 7.45 7.74 -12.47 -0.10 7.36 16 17 O -0.52 -8.25 14.98 -15.86 -0.24 -8.49 16 18 C -0.27 -3.14 5.92 -104.56 -0.62 -3.76 16 19 C 0.20 2.10 10.80 -16.81 -0.18 1.92 16 20 N -0.52 -5.74 9.31 -10.44 -0.10 -5.84 16 21 C 0.39 4.37 7.31 -157.13 -1.15 3.22 16 22 C -0.11 -0.92 6.23 -91.77 -0.57 -1.50 16 23 C -0.15 -1.01 10.01 -26.69 -0.27 -1.28 16 24 C -0.15 -1.04 10.24 -26.69 -0.27 -1.32 16 25 N -0.54 -6.63 10.34 -10.47 -0.11 -6.73 16 26 C 0.42 5.24 7.85 -16.19 -0.13 5.12 16 27 O -0.45 -5.36 11.81 -38.68 -0.46 -5.81 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.02 0.31 7.75 -51.93 -0.40 -0.09 16 34 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.38 9.89 7.67 -40.82 -0.31 9.58 16 36 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 37 H 0.40 3.90 6.73 -40.82 -0.27 3.62 16 38 H 0.18 1.34 6.53 -52.49 -0.34 1.00 16 39 H 0.13 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.11 0.88 7.53 -51.92 -0.39 0.49 16 41 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.41 3.16 9.06 45.56 0.41 3.57 16 LS Contribution 375.52 15.07 5.66 5.66 Total: -1.00 -34.64 375.52 -9.11 -43.75 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -5.48 Total: 10.90 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: -3.51 Total: 3.52 kcal Atomic # 7 Polarization: -66.65 SS G_CDS: -0.06 Total: -66.72 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: -0.69 Total: -14.30 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.64 -9.11 -43.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699140182.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.967 kcal (2) G-P(sol) polarization free energy of solvation -34.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds