Wall clock time and date at job start Tue Mar 31 2020 13:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46496 * 109.47002 * 2 1 4 4 C 1.46497 * 120.00246 * 278.11955 * 3 2 1 5 5 C 1.52992 * 109.47387 * 270.00324 * 4 3 2 6 6 N 1.46504 * 109.47413 * 179.97438 * 5 4 3 7 7 C 1.36940 * 120.00260 * 180.02562 * 6 5 4 8 8 H 1.08000 * 119.99758 * 359.97438 * 7 6 5 9 9 C 1.38802 * 119.99985 * 180.02562 * 7 6 5 10 10 N 1.31622 * 120.00301 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00221 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46963 * 59.99598 * 11 9 7 13 13 H 1.48499 * 109.47280 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.46892 * 299.99802 * 11 9 7 15 15 C 1.34783 * 120.00023 * 98.12741 * 3 2 1 16 16 O 1.21507 * 119.99977 * 177.79930 * 15 3 2 17 17 C 1.48161 * 119.99828 * 357.78992 * 15 3 2 18 18 C 1.39979 * 120.88828 * 317.63791 * 17 15 3 19 19 C 1.37999 * 119.15445 * 180.02562 * 18 17 15 20 20 N 1.31878 * 120.99492 * 0.02562 * 19 18 17 21 21 C 1.32280 * 121.95806 * 359.66335 * 20 19 18 22 22 N 1.39416 * 119.63854 * 180.30936 * 21 20 19 23 23 C 1.34782 * 119.99797 * 5.94172 * 22 21 20 24 24 C 1.50702 * 119.99830 * 184.80251 * 23 22 21 25 25 O 1.21276 * 120.00102 * 4.80561 * 23 22 21 26 26 C 1.39016 * 120.72593 * 0.63187 * 21 20 19 27 27 H 1.09001 * 109.47305 * 199.05776 * 1 2 3 28 28 H 1.09000 * 109.47145 * 319.06188 * 1 2 3 29 29 H 1.08998 * 109.47023 * 79.05339 * 1 2 3 30 30 H 1.08996 * 109.46863 * 239.99799 * 2 1 3 31 31 H 1.09003 * 109.46925 * 120.00130 * 2 1 3 32 32 H 1.09000 * 109.46721 * 30.00562 * 4 3 2 33 33 H 1.09001 * 109.47337 * 150.00268 * 4 3 2 34 34 H 1.09000 * 109.47384 * 299.99832 * 5 4 3 35 35 H 1.09005 * 109.47030 * 60.00203 * 5 4 3 36 36 H 0.96996 * 119.99435 * 0.02562 * 6 5 4 37 37 H 0.96997 * 120.00264 * 180.02562 * 10 9 7 38 38 H 1.08000 * 120.42271 * 359.97438 * 18 17 15 39 39 H 1.08007 * 119.50256 * 180.02562 * 19 18 17 40 40 H 0.96999 * 120.00335 * 185.93125 * 22 21 20 41 41 H 1.08996 * 109.47209 * 0.02562 * 24 23 22 42 42 H 1.09004 * 109.46814 * 119.99828 * 24 23 22 43 43 H 1.08996 * 109.47539 * 239.99793 * 24 23 22 44 44 H 1.08007 * 120.53053 * 179.67940 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0935 2.1316 -1.2560 5 6 3.4660 1.9168 -1.8970 6 7 3.5410 2.6667 -3.1533 7 6 4.6828 2.6256 -3.9082 8 1 5.5282 2.0406 -3.5772 9 6 4.7540 3.3365 -5.0982 10 7 3.7243 4.0507 -5.5009 11 14 6.3118 3.2810 -6.1277 12 1 6.5893 1.8788 -6.5302 13 1 6.1332 4.1179 -7.3413 14 1 7.4510 3.8017 -5.3300 15 6 2.3985 1.9616 1.1555 16 8 2.8411 3.0932 1.1502 17 6 2.2767 1.2198 2.4323 18 6 1.1383 0.4552 2.7133 19 6 1.0621 -0.2209 3.9139 20 7 2.0423 -0.1552 4.7937 21 6 3.1389 0.5495 4.5688 22 7 4.1481 0.5801 5.5302 23 6 4.0583 -0.1989 6.6264 24 6 5.0926 -0.0874 7.7167 25 8 3.1451 -0.9895 6.7354 26 6 3.2933 1.2654 3.3872 27 1 -0.3634 -0.9713 0.3356 28 1 -0.3633 0.7763 0.6734 29 1 -0.3633 0.1951 -1.0090 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.3164 1.7815 -1.9353 33 1 1.9488 3.1930 -1.0543 34 1 4.2432 2.2668 -1.2176 35 1 3.6107 0.8554 -2.0987 36 1 2.7819 3.1924 -3.4503 37 1 3.7739 4.5472 -6.3326 38 1 0.3296 0.3959 1.9999 39 1 0.1865 -0.8129 4.1363 40 1 4.9150 1.1618 5.4101 41 1 5.8280 0.6694 7.4440 42 1 4.6073 0.1979 8.6502 43 1 5.5904 -1.0486 7.8451 44 1 4.1878 1.8439 3.2090 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699210067.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:20 Heat of formation + Delta-G solvation = 7.613591 kcal Electronic energy + Delta-G solvation = -26329.173995 eV Core-core repulsion = 22476.306692 eV Total energy + Delta-G solvation = -3852.867303 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.30494 -40.11347 -38.84779 -36.41429 -35.32907 -34.65222 -32.91032 -31.75358 -31.23212 -30.48729 -29.23908 -27.91772 -25.13742 -23.80151 -23.62677 -23.28824 -21.83576 -20.97055 -19.54771 -18.30368 -17.47201 -17.20323 -16.89361 -16.71081 -15.92366 -15.88172 -15.58677 -15.00185 -14.69022 -14.39669 -14.27844 -14.11741 -14.00496 -13.72717 -13.51776 -13.23180 -13.08213 -12.98048 -12.70036 -12.63570 -12.30689 -11.87346 -11.40910 -11.28380 -11.04252 -10.98705 -10.90379 -10.69022 -10.61568 -10.20665 -10.14023 -9.95104 -9.74442 -9.34769 -8.87784 -8.65716 -8.60577 -6.94472 -5.76749 -3.06239 0.64369 0.75388 2.27013 2.40917 2.73880 2.92854 3.44421 3.48468 3.49859 3.61089 3.97819 4.16033 4.46461 4.59949 4.62623 4.67284 4.69839 4.79062 4.87002 4.95270 5.02751 5.13501 5.31259 5.33285 5.38604 5.51060 5.56192 5.58474 5.63912 5.74081 5.78132 5.85924 5.99624 6.01873 6.10693 6.35893 6.49562 6.70132 6.77517 6.86026 7.35245 7.60540 7.68976 7.91384 8.08345 8.41644 9.52526 10.08208 10.43373 11.46035 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.018224 B = 0.002502 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.095623 B =11189.863795 C =12236.624566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.094 3.906 3 N -0.596 5.596 4 C 0.108 3.892 5 C 0.143 3.857 6 N -0.730 5.730 7 C -0.239 4.239 8 H 0.069 0.931 9 C -0.014 4.014 10 N -0.933 5.933 11 Si 0.909 3.091 12 H -0.286 1.286 13 H -0.290 1.290 14 H -0.286 1.286 15 C 0.554 3.446 16 O -0.519 6.519 17 C -0.047 4.047 18 C -0.191 4.191 19 C 0.129 3.871 20 N -0.469 5.469 21 C 0.356 3.644 22 N -0.662 5.662 23 C 0.502 3.498 24 C -0.169 4.169 25 O -0.481 6.481 26 C -0.156 4.156 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.023 0.977 35 H 0.018 0.982 36 H 0.384 0.616 37 H 0.256 0.744 38 H 0.158 0.842 39 H 0.165 0.835 40 H 0.419 0.581 41 H 0.078 0.922 42 H 0.099 0.901 43 H 0.098 0.902 44 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.213 -10.429 23.952 26.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.029 4.029 3 N -0.328 5.328 4 C -0.014 4.014 5 C 0.014 3.986 6 N -0.375 5.375 7 C -0.370 4.370 8 H 0.087 0.913 9 C -0.210 4.210 10 N -0.582 5.582 11 Si 0.740 3.260 12 H -0.213 1.213 13 H -0.216 1.216 14 H -0.212 1.212 15 C 0.341 3.659 16 O -0.394 6.394 17 C -0.058 4.058 18 C -0.212 4.212 19 C -0.029 4.029 20 N -0.184 5.184 21 C 0.125 3.875 22 N -0.310 5.310 23 C 0.288 3.712 24 C -0.229 4.229 25 O -0.350 6.350 26 C -0.180 4.180 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.041 0.959 35 H 0.036 0.964 36 H 0.218 0.782 37 H 0.066 0.934 38 H 0.175 0.825 39 H 0.182 0.818 40 H 0.257 0.743 41 H 0.097 0.903 42 H 0.117 0.883 43 H 0.117 0.883 44 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -4.495 -10.896 24.838 27.493 hybrid contribution 1.120 0.934 -1.636 2.191 sum -3.375 -9.963 23.202 25.475 Atomic orbital electron populations 1.22416 0.95735 1.02356 1.03158 1.21821 0.94567 0.82494 1.04019 1.47857 1.63567 1.14215 1.07165 1.21759 0.99321 0.97349 0.82965 1.20898 0.93665 0.95210 0.88795 1.42193 1.16972 1.57399 1.20908 1.19150 0.92730 1.24306 1.00833 0.91267 1.24750 0.97834 0.99999 0.98370 1.69648 1.29854 1.34914 1.23777 0.86235 0.82739 0.77315 0.79695 1.21257 1.21626 1.21232 1.18241 0.78316 0.86153 0.83222 1.90842 1.44022 1.18152 1.86403 1.20106 0.94876 0.96203 0.94661 1.22939 0.99569 0.98531 1.00192 1.22627 0.96041 0.95747 0.88472 1.67459 0.99964 1.18152 1.32779 1.18298 0.88492 0.93190 0.87526 1.43806 1.22568 1.44184 1.20484 1.21102 0.87357 0.80138 0.82557 1.21872 0.98255 1.05038 0.97692 1.90833 1.33312 1.33662 1.77181 1.21511 1.01363 1.02470 0.92690 0.91015 0.91617 0.91458 0.89609 0.89813 0.90094 0.89536 0.95908 0.96387 0.78241 0.93412 0.82532 0.81831 0.74326 0.90288 0.88290 0.88339 0.83721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.38 8.79 37.16 0.33 -1.05 16 2 C 0.09 0.94 5.59 -4.04 -0.02 0.92 16 3 N -0.60 -8.21 2.47 -174.69 -0.43 -8.64 16 4 C 0.11 1.81 5.52 -4.05 -0.02 1.78 16 5 C 0.14 2.98 6.58 -4.04 -0.03 2.96 16 6 N -0.73 -18.92 5.60 -59.91 -0.34 -19.26 16 7 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 10 N -0.93 -28.45 13.06 55.49 0.72 -27.73 16 11 Si 0.91 22.63 29.55 -169.99 -5.02 17.61 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 13 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 14 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 15 C 0.55 8.34 7.35 -12.18 -0.09 8.25 16 16 O -0.52 -9.91 16.58 5.36 0.09 -9.82 16 17 C -0.05 -0.57 5.01 -104.68 -0.52 -1.09 16 18 C -0.19 -1.85 7.66 -39.02 -0.30 -2.14 16 19 C 0.13 1.27 11.16 -17.62 -0.20 1.07 16 20 N -0.47 -5.86 7.90 -12.41 -0.10 -5.96 16 21 C 0.36 3.99 7.41 -154.76 -1.15 2.85 16 22 N -0.66 -5.48 5.39 -11.44 -0.06 -5.54 16 23 C 0.50 4.57 7.89 -10.98 -0.09 4.48 16 24 C -0.17 -0.70 10.39 36.01 0.37 -0.33 16 25 O -0.48 -6.63 15.40 5.56 0.09 -6.55 16 26 C -0.16 -1.76 9.62 -38.80 -0.37 -2.14 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.52 6.31 -51.93 -0.33 0.19 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.09 0.86 8.13 -51.93 -0.42 0.44 16 31 H 0.08 0.76 5.52 -51.93 -0.29 0.47 16 32 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 33 H 0.09 1.60 7.45 -51.93 -0.39 1.22 16 34 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.38 10.31 7.67 -40.82 -0.31 10.00 16 37 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 38 H 0.16 1.22 3.50 -52.49 -0.18 1.04 16 39 H 0.16 1.14 8.06 -52.48 -0.42 0.72 16 40 H 0.42 1.90 8.54 -40.82 -0.35 1.55 16 41 H 0.08 0.13 7.92 -51.93 -0.41 -0.28 16 42 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.15 1.48 8.06 -52.48 -0.42 1.06 16 LS Contribution 369.94 15.07 5.57 5.57 Total: -1.00 -38.45 369.94 -7.84 -46.28 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -6.03 Total: 5.94 kcal Atomic # 6 Polarization: 10.41 SS G_CDS: -2.33 Total: 8.08 kcal Atomic # 7 Polarization: -66.92 SS G_CDS: -0.20 Total: -67.12 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: 0.17 Total: -16.37 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -38.45 -7.84 -46.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699210067.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.896 kcal (2) G-P(sol) polarization free energy of solvation -38.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds