Wall clock time and date at job start Tue Mar 31 2020 12:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47611 * 2 1 4 4 C 1.53000 * 109.47065 * 120.00880 * 2 1 3 5 5 N 1.46503 * 109.46875 * 174.99450 * 4 2 1 6 6 C 1.46497 * 120.00372 * 269.99809 * 5 4 2 7 7 C 1.36936 * 119.99643 * 90.00180 * 5 4 2 8 8 H 1.07996 * 120.00226 * 22.81438 * 7 5 4 9 9 C 1.38815 * 119.99928 * 202.81513 * 7 5 4 10 10 N 1.31617 * 119.99802 * 15.01986 * 9 7 5 11 11 Si 1.86799 * 119.99962 * 195.02402 * 9 7 5 12 12 H 1.48507 * 109.47168 * 60.00109 * 11 9 7 13 13 H 1.48500 * 109.46888 * 179.97438 * 11 9 7 14 14 H 1.48491 * 109.47127 * 299.99816 * 11 9 7 15 15 N 1.46503 * 109.46653 * 240.00618 * 2 1 3 16 16 C 1.34783 * 119.99971 * 85.00547 * 15 2 1 17 17 O 1.21585 * 120.00105 * 359.97438 * 16 15 2 18 18 C 1.47579 * 119.99903 * 179.97438 * 16 15 2 19 19 C 1.39759 * 120.07492 * 359.72294 * 18 16 15 20 20 C 1.37665 * 119.92692 * 179.81397 * 19 18 16 21 21 C 1.39137 * 120.06915 * 0.43822 * 20 19 18 22 22 N 1.39434 * 119.92091 * 179.76321 * 21 20 19 23 23 C 1.34774 * 119.99939 * 212.89653 * 22 21 20 24 24 N 1.34780 * 119.99957 * 185.28325 * 23 22 21 25 25 O 1.21576 * 120.00229 * 5.28270 * 23 22 21 26 26 C 1.39132 * 120.15173 * 359.79073 * 21 20 19 27 27 C 1.37657 * 120.07396 * 359.97438 * 26 21 20 28 28 H 1.09002 * 109.47390 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46833 * 59.99123 * 1 2 3 30 30 H 1.08998 * 109.46979 * 299.99463 * 1 2 3 31 31 H 1.08996 * 109.46708 * 294.99414 * 4 2 1 32 32 H 1.09001 * 109.47104 * 55.00094 * 4 2 1 33 33 H 1.09003 * 109.46884 * 94.47839 * 6 5 4 34 34 H 1.08998 * 109.47584 * 214.48146 * 6 5 4 35 35 H 1.09005 * 109.47107 * 334.48157 * 6 5 4 36 36 H 0.97002 * 119.99746 * 179.97438 * 10 9 7 37 37 H 0.97006 * 120.00416 * 264.99796 * 15 2 1 38 38 H 1.07998 * 120.03646 * 0.02562 * 19 18 16 39 39 H 1.07995 * 119.96619 * 180.18236 * 20 19 18 40 40 H 0.97002 * 119.99870 * 32.91184 * 22 21 20 41 41 H 0.97004 * 119.99935 * 0.02562 * 24 23 22 42 42 H 0.97006 * 119.99986 * 180.02562 * 24 23 22 43 43 H 1.08004 * 119.96474 * 179.97438 * 26 21 20 44 44 H 1.08002 * 120.03810 * 179.97438 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 7 3.5000 -0.8267 1.1903 6 6 4.1258 -1.9921 0.5608 7 6 4.2799 0.1645 1.7239 8 1 3.8792 0.8148 2.4873 9 6 5.5854 0.3332 1.2835 10 7 5.9837 -0.2429 0.1691 11 14 6.7771 1.3780 2.2724 12 1 6.9290 0.8021 3.6328 13 1 8.0978 1.3988 1.5939 14 1 6.2519 2.7630 2.3770 15 7 2.0182 -0.6905 -1.1963 16 6 2.1470 -0.0180 -2.3572 17 8 1.8575 1.1617 -2.4118 18 6 2.6393 -0.7134 -3.5622 19 6 2.9780 -2.0679 -3.4998 20 6 3.4334 -2.7146 -4.6266 21 6 3.5652 -2.0189 -5.8243 22 7 4.0313 -2.6758 -6.9625 23 6 4.7703 -2.0082 -7.8706 24 7 5.1310 -2.6114 -9.0207 25 8 5.1115 -0.8619 -7.6525 26 6 3.2334 -0.6693 -5.8887 27 6 2.7729 -0.0178 -4.7669 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5140 -0.8900 30 1 -0.3633 0.5137 0.8900 31 1 1.7517 -0.1586 2.1369 32 1 1.6054 -1.7200 1.2949 33 1 4.3522 -1.7646 -0.4808 34 1 5.0476 -2.2385 1.0877 35 1 3.4429 -2.8405 0.6073 36 1 6.8959 -0.1247 -0.1388 37 1 2.2489 -1.6317 -1.1529 38 1 2.8794 -2.6076 -2.5695 39 1 3.6924 -3.7620 -4.5798 40 1 3.8236 -3.6132 -7.1008 41 1 4.8584 -3.5259 -9.1949 42 1 5.6632 -2.1311 -9.6741 43 1 3.3373 -0.1321 -6.8199 44 1 2.5160 1.0300 -4.8175 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699472746.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:03 Heat of formation + Delta-G solvation = -11.078322 kcal Electronic energy + Delta-G solvation = -27126.758936 eV Core-core repulsion = 23273.081091 eV Total energy + Delta-G solvation = -3853.677845 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.79507 -39.52201 -37.99356 -36.24182 -34.83284 -33.96460 -33.91292 -31.50799 -30.77360 -30.34561 -28.92767 -26.15109 -25.55528 -24.05560 -22.88345 -21.78039 -21.27653 -20.34321 -19.74418 -18.65678 -18.25690 -17.40671 -16.73590 -16.20720 -15.78103 -15.39082 -14.84986 -14.81322 -14.64162 -14.24421 -14.09009 -13.65846 -13.50789 -13.31508 -13.15000 -12.87142 -12.56123 -12.40054 -12.07329 -11.84996 -11.41027 -11.17589 -11.03994 -10.79961 -10.71834 -10.61311 -10.50313 -10.29483 -10.17416 -10.04418 -9.93645 -9.79311 -9.27533 -8.85222 -8.54052 -8.32773 -8.02616 -6.70168 -5.67651 -3.12375 1.03466 1.54225 2.48530 2.80186 3.39544 3.44702 3.50104 3.50551 3.84467 4.05338 4.25064 4.56504 4.90648 5.01979 5.22134 5.41013 5.46341 5.47417 5.52880 5.57802 5.74779 5.91470 6.04723 6.06029 6.13228 6.14401 6.21919 6.30602 6.44797 6.49397 6.52653 6.56533 6.57372 6.62606 6.69325 6.95522 7.03791 7.25854 7.32527 7.51987 7.66907 7.85741 8.21902 8.23513 8.43909 8.91485 9.27371 9.90578 10.38535 11.37654 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013030 B = 0.003585 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.433460 B = 7809.157557 C = 8962.064008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.117 3.883 3 H 0.086 0.914 4 C 0.142 3.858 5 N -0.596 5.596 6 C 0.159 3.841 7 C -0.260 4.260 8 H 0.067 0.933 9 C 0.007 3.993 10 N -0.900 5.900 11 Si 0.902 3.098 12 H -0.285 1.285 13 H -0.291 1.291 14 H -0.283 1.283 15 N -0.693 5.693 16 C 0.562 3.438 17 O -0.551 6.551 18 C -0.136 4.136 19 C -0.058 4.058 20 C -0.155 4.155 21 C 0.178 3.822 22 N -0.683 5.683 23 C 0.703 3.297 24 N -0.863 5.863 25 O -0.568 6.568 26 C -0.132 4.132 27 C -0.041 4.041 28 H 0.048 0.952 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.041 0.959 33 H 0.033 0.967 34 H 0.041 0.959 35 H -0.005 1.005 36 H 0.252 0.748 37 H 0.393 0.607 38 H 0.130 0.870 39 H 0.129 0.871 40 H 0.407 0.593 41 H 0.398 0.602 42 H 0.418 0.582 43 H 0.138 0.862 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.799 -11.853 -15.406 20.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.009 3.991 3 H 0.104 0.896 4 C 0.014 3.986 5 N -0.318 5.318 6 C 0.014 3.986 7 C -0.389 4.389 8 H 0.085 0.915 9 C -0.192 4.192 10 N -0.544 5.544 11 Si 0.732 3.268 12 H -0.212 1.212 13 H -0.217 1.217 14 H -0.209 1.209 15 N -0.342 5.342 16 C 0.349 3.651 17 O -0.430 6.430 18 C -0.140 4.140 19 C -0.077 4.077 20 C -0.175 4.175 21 C 0.082 3.918 22 N -0.331 5.331 23 C 0.401 3.599 24 N -0.432 5.432 25 O -0.444 6.444 26 C -0.152 4.152 27 C -0.061 4.061 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.059 0.941 33 H 0.051 0.949 34 H 0.060 0.940 35 H 0.013 0.987 36 H 0.062 0.938 37 H 0.228 0.772 38 H 0.148 0.852 39 H 0.147 0.853 40 H 0.242 0.758 41 H 0.226 0.774 42 H 0.251 0.749 43 H 0.156 0.844 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -7.575 -10.070 -15.213 19.754 hybrid contribution 1.104 -0.642 -0.058 1.278 sum -6.472 -10.712 -15.272 19.745 Atomic orbital electron populations 1.22155 0.96905 1.01026 1.01696 1.21878 0.91626 0.99275 0.86316 0.89562 1.21204 0.85823 0.97157 0.94402 1.43876 0.99042 1.20751 1.68122 1.20854 0.94553 0.85139 0.98014 1.19096 0.94100 1.10795 1.14948 0.91493 1.24978 0.98912 0.99232 0.96093 1.70037 1.17245 1.47106 1.20007 0.86381 0.80587 0.80364 0.79473 1.21194 1.21732 1.20944 1.45691 1.65797 1.13565 1.09159 1.18025 0.77519 0.86388 0.83190 1.90714 1.51425 1.15506 1.85357 1.20075 1.04810 0.94266 0.94799 1.21073 0.95478 0.93450 0.97723 1.20679 1.05340 1.00606 0.90907 1.17584 0.96204 0.92668 0.85321 1.42444 1.54846 1.14329 1.21443 1.15964 0.78644 0.84819 0.80438 1.42971 1.61013 1.18827 1.20355 1.91048 1.58978 1.16556 1.77794 1.21062 1.00666 0.93485 1.00004 1.21131 0.94195 1.00210 0.90564 0.93248 0.92926 0.92118 0.92269 0.94079 0.94906 0.94034 0.98655 0.93784 0.77183 0.85215 0.85332 0.75789 0.77446 0.74931 0.84385 0.84503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 9.48 37.16 0.35 -2.10 16 2 C 0.12 2.25 2.88 -67.93 -0.20 2.05 16 3 H 0.09 2.02 7.58 -51.93 -0.39 1.63 16 4 C 0.14 2.79 5.33 -4.04 -0.02 2.76 16 5 N -0.60 -14.43 2.78 -181.12 -0.50 -14.93 16 6 C 0.16 3.68 7.63 59.85 0.46 4.14 16 7 C -0.26 -7.14 9.65 -15.06 -0.15 -7.29 16 8 H 0.07 1.81 7.86 -52.49 -0.41 1.40 16 9 C 0.01 0.20 5.05 -17.43 -0.09 0.11 16 10 N -0.90 -26.45 10.82 55.49 0.60 -25.85 16 11 Si 0.90 22.49 29.58 -169.99 -5.03 17.46 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 14 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 15 N -0.69 -13.12 4.36 -54.83 -0.24 -13.36 16 16 C 0.56 11.51 7.73 -12.45 -0.10 11.42 16 17 O -0.55 -13.06 16.00 5.29 0.08 -12.97 16 18 C -0.14 -2.38 5.88 -104.95 -0.62 -3.00 16 19 C -0.06 -0.84 9.53 -39.22 -0.37 -1.22 16 20 C -0.15 -1.90 9.94 -39.46 -0.39 -2.29 16 21 C 0.18 2.29 6.29 -83.74 -0.53 1.76 16 22 N -0.68 -6.37 5.33 -14.22 -0.08 -6.45 16 23 C 0.70 7.63 8.57 -86.92 -0.74 6.89 16 24 N -0.86 -4.82 8.88 27.63 0.25 -4.58 16 25 O -0.57 -9.15 14.81 5.30 0.08 -9.07 16 26 C -0.13 -1.99 8.63 -39.46 -0.34 -2.33 16 27 C -0.04 -0.70 9.58 -39.23 -0.38 -1.07 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.86 8.14 -51.92 -0.42 0.44 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 1.13 8.03 -51.93 -0.42 0.71 16 32 H 0.04 0.70 7.86 -51.93 -0.41 0.29 16 33 H 0.03 0.81 6.91 -51.93 -0.36 0.45 16 34 H 0.04 1.06 7.34 -51.93 -0.38 0.68 16 35 H -0.01 -0.10 7.84 -51.93 -0.41 -0.50 16 36 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.39 6.72 5.19 -40.82 -0.21 6.51 16 38 H 0.13 1.70 6.39 -52.49 -0.34 1.37 16 39 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 40 H 0.41 2.09 8.83 -40.82 -0.36 1.73 16 41 H 0.40 0.79 8.85 -40.82 -0.36 0.43 16 42 H 0.42 2.00 8.93 -40.82 -0.36 1.64 16 43 H 0.14 2.11 6.36 -52.48 -0.33 1.77 16 44 H 0.14 2.34 7.64 -52.49 -0.40 1.94 16 LS Contribution 366.44 15.07 5.52 5.52 Total: -1.00 -37.31 366.44 -8.40 -45.71 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -5.97 Total: 8.69 kcal Atomic # 6 Polarization: 12.94 SS G_CDS: -3.11 Total: 9.83 kcal Atomic # 7 Polarization: -65.19 SS G_CDS: 0.03 Total: -65.17 kcal Atomic # 8 Polarization: -22.20 SS G_CDS: 0.16 Total: -22.04 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.03 Total: 17.46 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -37.31 -8.40 -45.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699472746.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.628 kcal (2) G-P(sol) polarization free energy of solvation -37.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds