Wall clock time and date at job start Tue Mar 31 2020 12:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46903 * 2 1 4 4 C 1.53007 * 109.46548 * 240.00644 * 2 1 3 5 5 N 1.46502 * 109.46634 * 184.99817 * 4 2 1 6 6 C 1.46493 * 120.00180 * 269.99629 * 5 4 2 7 7 C 1.36938 * 119.99766 * 90.00154 * 5 4 2 8 8 H 1.08003 * 120.00286 * 24.02748 * 7 5 4 9 9 C 1.38811 * 119.99613 * 204.02876 * 7 5 4 10 10 N 1.31618 * 120.00413 * 11.56261 * 9 7 5 11 11 Si 1.86806 * 119.99596 * 191.56352 * 9 7 5 12 12 H 1.48498 * 109.47377 * 60.00222 * 11 9 7 13 13 H 1.48505 * 109.46606 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.47251 * 299.99479 * 11 9 7 15 15 N 1.46496 * 109.47216 * 120.00710 * 2 1 3 16 16 C 1.34775 * 120.00040 * 274.99279 * 15 2 1 17 17 O 1.21593 * 119.99761 * 0.02562 * 16 15 2 18 18 C 1.47585 * 120.00053 * 179.97438 * 16 15 2 19 19 C 1.39745 * 120.07360 * 359.73051 * 18 16 15 20 20 C 1.37667 * 119.92438 * 179.73860 * 19 18 16 21 21 C 1.39134 * 120.07179 * 0.53220 * 20 19 18 22 22 N 1.39429 * 119.92323 * 179.69518 * 21 20 19 23 23 C 1.34783 * 119.99741 * 144.91072 * 22 21 20 24 24 N 1.34781 * 119.99905 * 184.52965 * 23 22 21 25 25 O 1.21575 * 120.00074 * 4.53440 * 23 22 21 26 26 C 1.39135 * 120.15044 * 359.72289 * 21 20 19 27 27 C 1.37659 * 120.07331 * 0.02562 * 26 21 20 28 28 H 1.08993 * 109.47400 * 59.98973 * 1 2 3 29 29 H 1.09004 * 109.46430 * 299.99542 * 1 2 3 30 30 H 1.08998 * 109.47230 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46902 * 304.99458 * 4 2 1 32 32 H 1.09001 * 109.47331 * 65.00201 * 4 2 1 33 33 H 1.09000 * 109.47140 * 87.58635 * 6 5 4 34 34 H 1.08996 * 109.47602 * 207.58727 * 6 5 4 35 35 H 1.09007 * 109.47330 * 327.58946 * 6 5 4 36 36 H 0.96999 * 119.99970 * 179.97438 * 10 9 7 37 37 H 0.96998 * 120.00220 * 95.00179 * 15 2 1 38 38 H 1.08001 * 120.04304 * 359.97438 * 19 18 16 39 39 H 1.07999 * 119.96345 * 180.25607 * 20 19 18 40 40 H 0.97001 * 120.00727 * 324.90685 * 22 21 20 41 41 H 0.96997 * 119.99812 * 0.02562 * 24 23 22 42 42 H 0.97002 * 119.99803 * 179.97438 * 24 23 22 43 43 H 1.07993 * 119.96404 * 179.97438 * 26 21 20 44 44 H 1.08006 * 120.03898 * 179.97438 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2494 5 7 3.5000 -0.8263 -1.1908 6 6 4.3342 0.2341 -1.7614 7 6 4.0849 -1.9158 -0.6026 8 1 3.5436 -2.8479 -0.5336 9 6 5.3736 -1.8223 -0.0952 10 7 5.9479 -0.6447 0.0297 11 14 6.2926 -3.3681 0.4104 12 1 6.4337 -4.2665 -0.7635 13 1 7.6391 -2.9998 0.9172 14 1 5.5357 -4.0665 1.4802 15 7 2.0184 -0.6907 1.1960 16 6 2.1473 -0.0185 2.3570 17 8 1.8577 1.1612 2.4118 18 6 2.6387 -0.7145 3.5621 19 6 2.9655 -2.0719 3.5025 20 6 3.4287 -2.7168 4.6271 21 6 3.5612 -2.0213 5.8248 22 7 4.0246 -2.6790 6.9635 23 6 4.8012 -2.0253 7.8502 24 7 5.3243 -2.6850 8.9028 25 8 5.0299 -0.8407 7.7005 26 6 3.2316 -0.6710 5.8890 27 6 2.7727 -0.0189 4.7669 28 1 -0.3634 0.5139 -0.8898 29 1 -0.3632 0.5138 0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 1.6053 -1.7197 -1.2953 32 1 1.7516 -0.1581 -2.1371 33 1 4.5044 1.0061 -1.0110 34 1 5.2904 -0.1848 -2.0749 35 1 3.8286 0.6702 -2.6231 36 1 6.8482 -0.5794 0.3847 37 1 2.2491 -1.6319 1.1524 38 1 2.8584 -2.6136 2.5743 39 1 3.6854 -3.7648 4.5807 40 1 3.7881 -3.6071 7.1177 41 1 5.1420 -3.6302 9.0219 42 1 5.8835 -2.2146 9.5407 43 1 3.3352 -0.1342 6.8203 44 1 2.5167 1.0292 4.8174 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699472747.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:06 Heat of formation + Delta-G solvation = -11.904247 kcal Electronic energy + Delta-G solvation = -27469.658422 eV Core-core repulsion = 23615.944762 eV Total energy + Delta-G solvation = -3853.713660 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.71445 -39.41267 -37.90079 -36.19668 -34.75471 -33.92101 -33.85877 -31.53118 -30.69794 -30.23629 -28.80559 -26.13651 -25.56992 -23.95402 -22.76250 -21.74758 -21.27918 -20.30582 -19.57261 -18.58902 -18.15657 -17.39537 -16.60679 -16.14917 -15.69669 -15.37548 -14.88555 -14.72838 -14.59558 -14.18537 -14.00917 -13.70212 -13.41106 -13.19745 -13.08168 -12.78283 -12.48182 -12.33404 -12.08752 -11.77268 -11.37115 -11.23768 -11.07605 -10.83821 -10.71682 -10.51801 -10.36630 -10.19918 -10.14626 -10.05522 -9.98505 -9.82693 -9.17803 -8.73703 -8.53736 -8.25330 -7.93765 -6.73584 -5.74457 -3.20010 1.13612 1.65777 2.55128 2.87850 3.30996 3.39190 3.42193 3.47464 3.97182 4.12019 4.35827 4.46104 5.03751 5.15737 5.34792 5.37745 5.54648 5.56660 5.59525 5.69380 5.72775 5.95053 6.04272 6.16495 6.21265 6.24494 6.30485 6.34265 6.49054 6.52139 6.57918 6.61618 6.65146 6.76410 6.81712 6.95793 7.14790 7.37443 7.40603 7.58952 7.69741 7.79704 8.29740 8.38300 8.40842 9.03733 9.21520 9.85594 10.37167 11.31187 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012490 B = 0.004429 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.272189 B = 6320.622367 C = 7781.079803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.118 3.882 3 H 0.077 0.923 4 C 0.141 3.859 5 N -0.597 5.597 6 C 0.163 3.837 7 C -0.263 4.263 8 H 0.064 0.936 9 C 0.012 3.988 10 N -0.894 5.894 11 Si 0.894 3.106 12 H -0.285 1.285 13 H -0.291 1.291 14 H -0.281 1.281 15 N -0.681 5.681 16 C 0.561 3.439 17 O -0.561 6.561 18 C -0.132 4.132 19 C -0.056 4.056 20 C -0.154 4.154 21 C 0.172 3.828 22 N -0.683 5.683 23 C 0.703 3.297 24 N -0.863 5.863 25 O -0.570 6.570 26 C -0.132 4.132 27 C -0.046 4.046 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.048 0.952 32 H 0.052 0.948 33 H 0.019 0.981 34 H 0.054 0.946 35 H -0.006 1.006 36 H 0.254 0.746 37 H 0.402 0.598 38 H 0.134 0.866 39 H 0.127 0.873 40 H 0.406 0.594 41 H 0.397 0.603 42 H 0.418 0.582 43 H 0.142 0.858 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.854 -8.088 12.751 16.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.010 3.990 3 H 0.095 0.905 4 C 0.013 3.987 5 N -0.319 5.319 6 C 0.018 3.982 7 C -0.392 4.392 8 H 0.082 0.918 9 C -0.188 4.188 10 N -0.537 5.537 11 Si 0.724 3.276 12 H -0.211 1.211 13 H -0.217 1.217 14 H -0.208 1.208 15 N -0.330 5.330 16 C 0.348 3.652 17 O -0.442 6.442 18 C -0.136 4.136 19 C -0.075 4.075 20 C -0.175 4.175 21 C 0.077 3.923 22 N -0.331 5.331 23 C 0.402 3.598 24 N -0.432 5.432 25 O -0.446 6.446 26 C -0.152 4.152 27 C -0.065 4.065 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.037 0.963 34 H 0.072 0.928 35 H 0.012 0.988 36 H 0.064 0.936 37 H 0.239 0.761 38 H 0.152 0.848 39 H 0.145 0.855 40 H 0.242 0.758 41 H 0.225 0.775 42 H 0.250 0.750 43 H 0.160 0.840 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -6.704 -6.225 12.568 15.545 hybrid contribution 1.061 -2.065 0.801 2.456 sum -5.643 -8.290 13.369 16.712 Atomic orbital electron populations 1.22159 0.96933 1.01194 1.01547 1.21817 0.91734 0.98478 0.86950 0.90493 1.21200 0.86075 0.97811 0.93621 1.43850 0.98860 1.22573 1.66599 1.20773 0.93930 0.90659 0.92800 1.18991 0.98309 0.88940 1.32982 0.91803 1.25001 0.98881 0.95931 0.98968 1.70035 1.14559 1.21307 1.47819 0.86521 0.79621 0.83097 0.78386 1.21146 1.21724 1.20769 1.45621 1.64718 1.14270 1.08438 1.18034 0.77516 0.86325 0.83360 1.90690 1.52201 1.15657 1.85604 1.20078 1.04611 0.94183 0.94757 1.21161 0.94972 0.93560 0.97834 1.20734 1.05067 1.00661 0.91028 1.17594 0.96830 0.92714 0.85188 1.42406 1.52556 1.15702 1.22400 1.15963 0.78652 0.85233 0.79943 1.42961 1.57180 1.14224 1.28833 1.91016 1.64246 1.13548 1.75795 1.21174 1.00401 0.93511 1.00110 1.21143 0.94569 1.00176 0.90635 0.92305 0.92907 0.93063 0.93399 0.92995 0.96266 0.92752 0.98797 0.93591 0.76089 0.84818 0.85505 0.75827 0.77464 0.74977 0.84015 0.84603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.47 9.48 37.16 0.35 -2.12 16 2 C 0.12 2.27 2.88 -67.93 -0.20 2.07 16 3 H 0.08 1.72 7.58 -51.93 -0.39 1.33 16 4 C 0.14 2.74 5.37 -4.04 -0.02 2.72 16 5 N -0.60 -14.26 2.81 -181.12 -0.51 -14.77 16 6 C 0.16 4.02 9.03 59.84 0.54 4.56 16 7 C -0.26 -6.62 8.00 -15.06 -0.12 -6.74 16 8 H 0.06 1.53 7.85 -52.48 -0.41 1.12 16 9 C 0.01 0.32 5.08 -17.43 -0.09 0.24 16 10 N -0.89 -25.65 10.74 55.49 0.60 -25.06 16 11 Si 0.89 20.88 29.57 -169.99 -5.03 15.85 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 14 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 15 N -0.68 -13.60 4.44 -54.83 -0.24 -13.85 16 16 C 0.56 11.94 7.73 -12.45 -0.10 11.84 16 17 O -0.56 -13.41 16.00 5.28 0.08 -13.33 16 18 C -0.13 -2.50 5.88 -104.95 -0.62 -3.12 16 19 C -0.06 -0.93 9.53 -39.23 -0.37 -1.31 16 20 C -0.15 -2.21 9.94 -39.46 -0.39 -2.61 16 21 C 0.17 2.46 6.30 -83.74 -0.53 1.94 16 22 N -0.68 -7.24 5.32 -14.22 -0.08 -7.31 16 23 C 0.70 8.34 8.67 -86.91 -0.75 7.58 16 24 N -0.86 -5.64 8.88 27.63 0.25 -5.39 16 25 O -0.57 -9.57 14.59 5.30 0.08 -9.49 16 26 C -0.13 -2.14 8.66 -39.46 -0.34 -2.48 16 27 C -0.05 -0.81 9.58 -39.22 -0.38 -1.19 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.87 8.04 -51.93 -0.42 0.45 16 32 H 0.05 0.92 7.92 -51.93 -0.41 0.51 16 33 H 0.02 0.52 7.75 -51.93 -0.40 0.12 16 34 H 0.05 1.44 6.86 -51.93 -0.36 1.08 16 35 H -0.01 -0.14 7.93 -51.93 -0.41 -0.55 16 36 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 37 H 0.40 7.76 5.42 -40.82 -0.22 7.53 16 38 H 0.13 2.16 6.39 -52.49 -0.34 1.82 16 39 H 0.13 1.47 8.06 -52.49 -0.42 1.04 16 40 H 0.41 2.62 8.83 -40.82 -0.36 2.26 16 41 H 0.40 1.19 8.85 -40.82 -0.36 0.83 16 42 H 0.42 2.34 8.93 -40.82 -0.36 1.98 16 43 H 0.14 2.31 6.20 -52.49 -0.33 1.98 16 44 H 0.14 2.41 7.64 -52.48 -0.40 2.01 16 LS Contribution 366.76 15.07 5.53 5.53 Total: -1.00 -35.29 366.76 -8.33 -43.62 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: -6.00 Total: 12.80 kcal Atomic # 6 Polarization: 14.40 SS G_CDS: -3.01 Total: 11.39 kcal Atomic # 7 Polarization: -66.39 SS G_CDS: 0.01 Total: -66.38 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: 0.16 Total: -22.82 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.03 Total: 15.85 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.29 -8.33 -43.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699472747.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.721 kcal (2) G-P(sol) polarization free energy of solvation -35.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds