Wall clock time and date at job start Tue Mar 31 2020 12:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08990 * 109.47268 * 2 1 4 4 N 1.46500 * 109.47047 * 120.00405 * 2 1 3 5 5 C 1.36935 * 120.00013 * 274.99583 * 4 2 1 6 6 H 1.08003 * 119.99637 * 0.02562 * 5 4 2 7 7 C 1.38806 * 120.00076 * 180.02562 * 5 4 2 8 8 N 1.31620 * 120.00416 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00149 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.46841 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47693 * 119.99785 * 9 7 5 12 12 H 1.48503 * 109.46878 * 240.00346 * 9 7 5 13 13 C 1.53001 * 109.46833 * 239.99929 * 2 1 3 14 14 H 1.08998 * 110.88937 * 300.11365 * 13 2 1 15 15 C 1.55152 * 111.00619 * 176.18168 * 13 2 1 16 16 C 1.54320 * 102.94659 * 206.42563 * 15 13 2 17 17 N 1.47025 * 107.26929 * 22.19210 * 16 15 13 18 18 C 1.34776 * 125.64624 * 181.09390 * 17 16 15 19 19 O 1.21681 * 119.99678 * 179.97438 * 18 17 16 20 20 C 1.46808 * 120.00118 * 359.95790 * 18 17 16 21 21 C 1.36352 * 125.84619 * 179.71484 * 20 18 17 22 22 C 1.41311 * 107.00816 * 179.85310 * 21 20 18 23 23 C 1.47393 * 126.46160 * 180.19438 * 22 21 20 24 24 N 1.34781 * 119.99837 * 180.28452 * 23 22 21 25 25 O 1.21609 * 120.00268 * 0.27971 * 23 22 21 26 26 C 1.38211 * 107.07216 * 0.41295 * 22 21 20 27 27 N 1.34258 * 108.39720 * 359.74531 * 26 22 21 28 28 H 0.97004 * 125.39019 * 180.02562 * 27 26 22 29 29 C 1.47422 * 108.70609 * 1.06211 * 17 16 15 30 30 H 1.09007 * 109.46845 * 54.91148 * 1 2 3 31 31 H 1.09000 * 109.46666 * 294.91517 * 1 2 3 32 32 H 1.08997 * 109.47251 * 174.91604 * 1 2 3 33 33 H 0.96999 * 119.99796 * 94.99331 * 4 2 1 34 34 H 0.97001 * 120.00377 * 180.02562 * 8 7 5 35 35 H 1.08998 * 110.71873 * 324.79158 * 15 13 2 36 36 H 1.08999 * 110.71948 * 88.06012 * 15 13 2 37 37 H 1.09000 * 109.88349 * 262.77445 * 16 15 13 38 38 H 1.09002 * 110.01309 * 141.68183 * 16 15 13 39 39 H 1.08002 * 126.50021 * 359.96786 * 21 20 18 40 40 H 0.97004 * 119.99799 * 359.97438 * 24 23 22 41 41 H 0.96997 * 119.99612 * 180.02562 * 24 23 22 42 42 H 1.08001 * 125.79913 * 179.77020 * 26 22 21 43 43 H 1.08991 * 110.37006 * 217.03438 * 29 17 16 44 44 H 1.09005 * 110.46086 * 94.74987 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1492 -0.0076 2.3757 6 1 1.8920 1.0402 2.4243 7 6 2.6124 -0.6619 3.5089 8 7 2.9254 -1.9390 3.4498 9 14 2.7902 0.2697 5.1182 10 1 2.3754 1.6819 4.9211 11 1 1.9301 -0.3596 6.1522 12 1 4.2073 0.2277 5.5605 13 6 2.0400 -0.7213 -1.2493 14 1 1.6878 -1.7525 -1.2736 15 6 3.5879 -0.6591 -1.3345 16 6 3.8557 -0.7752 -2.8498 17 7 2.6288 -0.3560 -3.5432 18 6 2.4496 -0.3351 -4.8788 19 8 1.3869 0.0318 -5.3443 20 6 3.5365 -0.7548 -5.7720 21 6 3.4836 -0.7860 -7.1342 22 6 4.7408 -1.2463 -7.5862 23 6 5.1508 -1.4382 -8.9889 24 7 6.3876 -1.8919 -9.2735 25 8 4.3730 -1.1872 -9.8895 26 6 5.5118 -1.4875 -6.4648 27 7 4.7826 -1.1902 -5.3773 28 1 5.0854 -1.2692 -4.4591 29 6 1.6270 0.0369 -2.5356 30 1 -0.3633 0.5908 -0.8410 31 1 -0.3632 0.4329 0.9320 32 1 -0.3633 -1.0236 -0.0911 33 1 2.2490 -1.6319 1.1525 34 1 3.2487 -2.3963 4.2418 35 1 3.9575 0.2912 -0.9492 36 1 4.0375 -1.4948 -0.7983 37 1 4.0922 -1.8078 -3.1065 38 1 4.6827 -0.1241 -3.1335 39 1 2.6412 -0.5094 -7.7509 40 1 7.0080 -2.0918 -8.5551 41 1 6.6575 -2.0177 -10.1966 42 1 6.5282 -1.8526 -6.4635 43 1 0.6300 -0.2689 -2.8526 44 1 1.6574 1.1135 -2.3677 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699946875.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:04 Heat of formation + Delta-G solvation = -12.608104 kcal Electronic energy + Delta-G solvation = -26360.629119 eV Core-core repulsion = 22506.884938 eV Total energy + Delta-G solvation = -3853.744181 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.99055 -39.89752 -38.97816 -37.82138 -35.39054 -33.97284 -32.65482 -31.62922 -30.84399 -29.89208 -29.18151 -27.56195 -24.98615 -23.76300 -23.65188 -21.70612 -21.61500 -20.55461 -19.90135 -19.76541 -18.37517 -17.30605 -17.04715 -16.71719 -16.37138 -16.22752 -15.55908 -15.07283 -14.82066 -14.36030 -14.11713 -14.06415 -13.81734 -13.69973 -13.54452 -13.22403 -12.86225 -12.78109 -12.58886 -12.50791 -12.25079 -11.84251 -11.32441 -10.97899 -10.85562 -10.69223 -10.55359 -10.39051 -10.29190 -10.23389 -9.98805 -9.94543 -9.72538 -9.47745 -9.00332 -8.93599 -8.64139 -7.05277 -5.85420 -3.14067 1.11409 1.52285 2.55950 2.78073 3.04097 3.33458 3.33795 3.36742 3.43493 3.44986 4.22433 4.39358 4.48459 4.49890 4.58622 4.70715 4.80289 4.92219 5.05333 5.16293 5.43225 5.45551 5.51440 5.63772 5.75584 5.78132 5.84995 5.89567 5.98671 6.08878 6.16547 6.20794 6.32596 6.39650 6.45822 6.49288 6.55843 6.78632 6.80790 7.02253 7.07467 7.30260 7.63242 7.95141 8.05507 8.33044 9.44841 10.00973 10.35932 11.37150 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.028096 B = 0.002311 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.348887 B =12114.270413 C =12879.016252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.185 3.815 3 H 0.050 0.950 4 N -0.722 5.722 5 C -0.236 4.236 6 H 0.071 0.929 7 C -0.013 4.013 8 N -0.933 5.933 9 Si 0.905 3.095 10 H -0.280 1.280 11 H -0.292 1.292 12 H -0.292 1.292 13 C -0.102 4.102 14 H 0.083 0.917 15 C -0.113 4.113 16 C 0.084 3.916 17 N -0.617 5.617 18 C 0.601 3.399 19 O -0.526 6.526 20 C -0.051 4.051 21 C -0.046 4.046 22 C -0.239 4.239 23 C 0.595 3.405 24 N -0.856 5.856 25 O -0.545 6.545 26 C 0.068 3.932 27 N -0.526 5.526 28 H 0.424 0.576 29 C 0.115 3.885 30 H 0.038 0.962 31 H 0.056 0.944 32 H 0.046 0.954 33 H 0.383 0.617 34 H 0.254 0.746 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.159 0.841 40 H 0.398 0.602 41 H 0.403 0.597 42 H 0.181 0.819 43 H 0.081 0.919 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.881 -0.839 -19.276 21.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.075 3.925 3 H 0.068 0.932 4 N -0.363 5.363 5 C -0.367 4.367 6 H 0.089 0.911 7 C -0.209 4.209 8 N -0.581 5.581 9 Si 0.736 3.264 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.219 1.219 13 C -0.122 4.122 14 H 0.101 0.899 15 C -0.151 4.151 16 C -0.039 4.039 17 N -0.350 5.350 18 C 0.390 3.610 19 O -0.402 6.402 20 C -0.162 4.162 21 C -0.071 4.071 22 C -0.250 4.250 23 C 0.381 3.619 24 N -0.419 5.419 25 O -0.422 6.422 26 C -0.074 4.074 27 N -0.125 5.125 28 H 0.268 0.732 29 C -0.007 4.007 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.217 0.783 34 H 0.064 0.936 35 H 0.102 0.898 36 H 0.109 0.891 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.177 0.823 40 H 0.226 0.774 41 H 0.234 0.766 42 H 0.198 0.802 43 H 0.100 0.900 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.647 -0.273 -19.706 21.521 hybrid contribution 0.982 -0.205 1.461 1.772 sum 9.629 -0.478 -18.245 20.636 Atomic orbital electron populations 1.22499 0.99090 1.00726 1.00581 1.20129 0.91931 0.95141 0.85291 0.93188 1.42372 1.78188 1.10639 1.05141 1.19257 1.36295 0.93903 0.87266 0.91134 1.24720 1.02222 0.95962 0.98018 1.69660 1.51035 1.08636 1.28807 0.86153 0.77277 0.78847 0.84121 1.20565 1.21903 1.21925 1.22697 0.94805 1.00450 0.94247 0.89909 1.22566 0.96877 1.04585 0.91059 1.22358 0.87353 0.98655 0.95553 1.48465 1.16114 1.65670 1.04785 1.16670 0.86197 0.78148 0.79991 1.90867 1.26084 1.48310 1.74944 1.20110 0.86997 1.14659 0.94408 1.21083 0.97125 0.97455 0.91466 1.19584 0.96875 1.16414 0.92096 1.17397 0.81339 0.75551 0.87563 1.43679 1.15402 1.70757 1.12108 1.90834 1.52265 1.51292 1.47839 1.22444 0.97686 1.01734 0.85572 1.42539 1.11545 1.48660 1.09790 0.73151 1.22366 0.92253 0.99568 0.86519 0.94286 0.92465 0.93522 0.78326 0.93579 0.89770 0.89094 0.91696 0.91663 0.82320 0.77412 0.76607 0.80222 0.90044 0.90886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.85 9.23 37.16 0.34 -2.50 16 2 C 0.19 3.26 2.40 -67.93 -0.16 3.09 16 3 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 4 N -0.72 -16.29 4.88 -53.43 -0.26 -16.56 16 5 C -0.24 -6.10 9.93 -15.06 -0.15 -6.25 16 6 H 0.07 1.79 7.83 -52.48 -0.41 1.38 16 7 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 8 N -0.93 -26.66 13.06 55.49 0.72 -25.94 16 9 Si 0.90 21.46 29.55 -169.99 -5.02 16.44 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 C -0.10 -1.44 2.63 -88.47 -0.23 -1.67 16 14 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 15 C -0.11 -1.39 6.19 -24.90 -0.15 -1.55 16 16 C 0.08 0.80 5.11 -3.06 -0.02 0.79 16 17 N -0.62 -7.65 3.33 -172.01 -0.57 -8.22 16 18 C 0.60 8.42 7.82 -12.80 -0.10 8.32 16 19 O -0.53 -9.21 17.11 5.21 0.09 -9.12 16 20 C -0.05 -0.58 6.83 -82.41 -0.56 -1.14 16 21 C -0.05 -0.55 10.37 -39.09 -0.41 -0.96 16 22 C -0.24 -2.30 6.13 -105.01 -0.64 -2.94 16 23 C 0.59 6.02 8.09 -12.53 -0.10 5.92 16 24 N -0.86 -4.32 8.86 30.43 0.27 -4.05 16 25 O -0.54 -8.06 17.76 5.27 0.09 -7.97 16 26 C 0.07 0.41 11.43 -16.50 -0.19 0.22 16 27 N -0.53 -3.93 5.53 -9.31 -0.05 -3.98 16 28 H 0.42 2.32 4.83 -40.82 -0.20 2.12 16 29 C 0.12 1.53 5.52 -2.52 -0.01 1.52 16 30 H 0.04 0.56 7.60 -51.93 -0.39 0.16 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.38 9.23 7.80 -40.82 -0.32 8.91 16 34 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 35 H 0.08 1.11 8.04 -51.93 -0.42 0.69 16 36 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.06 0.51 7.07 -51.93 -0.37 0.14 16 38 H 0.07 0.49 7.21 -51.93 -0.37 0.12 16 39 H 0.16 2.10 8.06 -52.49 -0.42 1.67 16 40 H 0.40 0.64 7.74 -40.82 -0.32 0.33 16 41 H 0.40 1.63 8.93 -40.82 -0.36 1.27 16 42 H 0.18 0.20 7.44 -52.49 -0.39 -0.19 16 43 H 0.08 1.14 8.04 -51.93 -0.42 0.72 16 44 H 0.07 0.96 8.03 -51.93 -0.42 0.54 16 LS Contribution 366.14 15.07 5.52 5.52 Total: -1.00 -35.36 366.14 -7.75 -43.11 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -6.05 Total: 8.38 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: -2.48 Total: 2.39 kcal Atomic # 7 Polarization: -58.85 SS G_CDS: 0.11 Total: -58.74 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: 0.18 Total: -17.09 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.36 -7.75 -43.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699946875.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.501 kcal (2) G-P(sol) polarization free energy of solvation -35.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds