Wall clock time and date at job start Tue Mar 31 2020 12:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47447 * 2 1 4 4 N 1.46504 * 109.46972 * 239.99813 * 2 1 3 5 5 C 1.36938 * 119.99476 * 85.28060 * 4 2 1 6 6 H 1.08004 * 120.00149 * 359.71581 * 5 4 2 7 7 C 1.38816 * 119.99826 * 179.72677 * 5 4 2 8 8 N 1.31616 * 120.00061 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 119.99864 * 359.97438 * 7 5 4 10 10 H 1.48495 * 109.47104 * 90.00340 * 9 7 5 11 11 H 1.48505 * 109.47041 * 210.00046 * 9 7 5 12 12 H 1.48501 * 109.47085 * 330.00024 * 9 7 5 13 13 C 1.53006 * 109.47410 * 120.00465 * 2 1 3 14 14 H 1.08992 * 110.88407 * 59.89230 * 13 2 1 15 15 C 1.55153 * 111.00436 * 183.81945 * 13 2 1 16 16 C 1.54327 * 102.94181 * 153.57257 * 15 13 2 17 17 N 1.47030 * 107.27181 * 337.80769 * 16 15 13 18 18 C 1.34776 * 125.65123 * 178.90478 * 17 16 15 19 19 O 1.21672 * 120.00097 * 180.02562 * 18 17 16 20 20 C 1.46815 * 119.99763 * 0.03814 * 18 17 16 21 21 C 1.36345 * 125.84923 * 179.71406 * 20 18 17 22 22 C 1.41308 * 107.01376 * 179.85463 * 21 20 18 23 23 C 1.47387 * 126.46446 * 180.13762 * 22 21 20 24 24 N 1.34775 * 120.00114 * 180.29603 * 23 22 21 25 25 O 1.21611 * 120.00019 * 0.30186 * 23 22 21 26 26 C 1.38210 * 107.07106 * 0.40915 * 22 21 20 27 27 N 1.34267 * 108.39707 * 359.74957 * 26 22 21 28 28 H 0.96997 * 125.39198 * 179.97438 * 27 26 22 29 29 C 1.47426 * 108.69852 * 358.93922 * 17 16 15 30 30 H 1.08999 * 109.46962 * 65.08283 * 1 2 3 31 31 H 1.08997 * 109.47059 * 185.08700 * 1 2 3 32 32 H 1.09001 * 109.46824 * 305.07795 * 1 2 3 33 33 H 0.96994 * 120.00117 * 264.99813 * 4 2 1 34 34 H 0.96996 * 120.00198 * 179.97438 * 8 7 5 35 35 H 1.08993 * 110.72361 * 271.93654 * 15 13 2 36 36 H 1.08995 * 110.72043 * 35.21395 * 15 13 2 37 37 H 1.08995 * 109.88624 * 218.38984 * 16 15 13 38 38 H 1.08997 * 110.01189 * 97.29255 * 16 15 13 39 39 H 1.08005 * 126.48946 * 0.02562 * 21 20 18 40 40 H 0.97001 * 119.99958 * 0.02562 * 24 23 22 41 41 H 0.96999 * 120.00614 * 179.97438 * 24 23 22 42 42 H 1.07993 * 125.80196 * 179.76679 * 26 22 21 43 43 H 1.09002 * 110.36535 * 265.28523 * 29 17 16 44 44 H 1.09003 * 110.46111 * 143.01654 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1545 -0.0061 -2.3743 6 1 1.8976 1.0418 -2.4228 7 6 2.6225 -0.6591 -3.5064 8 7 2.7530 -0.0013 -4.6389 9 14 3.0673 -2.4714 -3.4224 10 1 1.8719 -3.2900 -3.7480 11 1 4.1472 -2.7619 -4.3994 12 1 3.5363 -2.8030 -2.0530 13 6 2.0401 -0.7214 1.2492 14 1 1.6880 -1.7526 1.2734 15 6 3.5880 -0.6591 1.3343 16 6 3.8559 -0.7752 2.8497 17 7 2.6290 -0.3562 3.5432 18 6 2.4497 -0.3354 4.8788 19 8 1.3871 0.0315 5.3443 20 6 3.5367 -0.7551 5.7720 21 6 3.4876 -0.7761 7.1344 22 6 4.7409 -1.2472 7.5860 23 6 5.1506 -1.4401 8.9886 24 7 6.3874 -1.8936 9.2732 25 8 4.3725 -1.1901 9.8892 26 6 5.5123 -1.4871 6.4646 27 7 4.7832 -1.1895 5.3772 28 1 5.0861 -1.2676 4.4590 29 6 1.6271 0.0367 2.5355 30 1 -0.3633 0.4330 -0.9320 31 1 -0.3633 -1.0236 0.0911 32 1 -0.3633 0.5906 0.8410 33 1 2.2490 -1.6318 -1.1526 34 1 3.0804 -0.4574 -5.4298 35 1 4.0377 -1.4947 0.7981 36 1 3.9575 0.2913 0.9491 37 1 4.6821 -0.1225 3.1312 38 1 4.0939 -1.8069 3.1084 39 1 2.6486 -0.4897 7.7513 40 1 7.0081 -2.0927 8.5549 41 1 6.6572 -2.0202 10.1962 42 1 6.5286 -1.8522 6.4632 43 1 1.6592 1.1133 2.3683 44 1 0.6293 -0.2678 2.8514 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699946876.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:07 Heat of formation + Delta-G solvation = -8.063751 kcal Electronic energy + Delta-G solvation = -26446.307543 eV Core-core repulsion = 22592.760420 eV Total energy + Delta-G solvation = -3853.547123 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.04528 -39.97843 -39.02660 -37.92555 -35.56446 -34.01128 -32.66519 -31.69001 -31.00948 -30.02341 -29.58597 -27.78208 -25.05821 -23.81070 -23.47041 -21.79568 -21.51078 -20.60871 -19.99373 -19.94383 -18.46684 -17.66534 -17.17618 -16.77289 -16.40477 -16.28297 -15.65303 -15.12880 -14.89209 -14.46000 -14.12686 -14.03072 -13.98438 -13.88688 -13.55922 -13.26603 -12.92116 -12.81831 -12.66794 -12.57514 -12.39077 -12.00739 -11.70531 -11.12387 -10.95952 -10.71445 -10.66045 -10.43404 -10.39549 -10.26706 -10.04695 -10.02386 -9.67070 -9.52780 -9.03240 -9.00275 -8.70314 -7.37248 -5.85029 -3.21194 1.05954 1.47637 2.49753 2.70955 2.98604 3.26165 3.28945 3.29553 3.31342 3.37501 4.14650 4.33285 4.38642 4.49788 4.51354 4.59958 4.68431 4.85619 4.90687 5.06388 5.32311 5.39379 5.44297 5.51864 5.59128 5.65254 5.71193 5.78875 5.89950 5.96703 6.04661 6.10449 6.21926 6.30287 6.34400 6.39949 6.45656 6.69418 6.75221 6.93395 7.03643 7.22576 7.88525 7.90815 8.01766 8.33660 9.11659 9.83900 10.03368 11.33226 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024704 B = 0.002490 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.162743 B =11240.735450 C =12075.029163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.191 3.809 3 H 0.059 0.941 4 N -0.746 5.746 5 C -0.242 4.242 6 H 0.090 0.910 7 C 0.005 3.995 8 N -0.933 5.933 9 Si 0.885 3.115 10 H -0.285 1.285 11 H -0.292 1.292 12 H -0.278 1.278 13 C -0.107 4.107 14 H 0.082 0.918 15 C -0.116 4.116 16 C 0.085 3.915 17 N -0.617 5.617 18 C 0.601 3.399 19 O -0.524 6.524 20 C -0.051 4.051 21 C -0.045 4.045 22 C -0.239 4.239 23 C 0.594 3.406 24 N -0.856 5.856 25 O -0.544 6.544 26 C 0.068 3.932 27 N -0.527 5.527 28 H 0.424 0.576 29 C 0.116 3.884 30 H 0.061 0.939 31 H 0.045 0.955 32 H 0.042 0.958 33 H 0.360 0.640 34 H 0.260 0.740 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.160 0.840 40 H 0.398 0.602 41 H 0.403 0.597 42 H 0.181 0.819 43 H 0.075 0.925 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.177 -5.032 22.167 24.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.081 3.919 3 H 0.077 0.923 4 N -0.389 5.389 5 C -0.372 4.372 6 H 0.108 0.892 7 C -0.191 4.191 8 N -0.580 5.580 9 Si 0.715 3.285 10 H -0.212 1.212 11 H -0.219 1.219 12 H -0.205 1.205 13 C -0.127 4.127 14 H 0.100 0.900 15 C -0.154 4.154 16 C -0.039 4.039 17 N -0.351 5.351 18 C 0.391 3.609 19 O -0.400 6.400 20 C -0.162 4.162 21 C -0.071 4.071 22 C -0.249 4.249 23 C 0.381 3.619 24 N -0.419 5.419 25 O -0.422 6.422 26 C -0.074 4.074 27 N -0.126 5.126 28 H 0.268 0.732 29 C -0.006 4.006 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.193 0.807 34 H 0.070 0.930 35 H 0.105 0.895 36 H 0.107 0.893 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.177 0.823 40 H 0.226 0.774 41 H 0.234 0.766 42 H 0.198 0.802 43 H 0.093 0.907 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 8.940 -4.411 22.550 24.655 hybrid contribution 1.169 -1.655 -0.630 2.122 sum 10.109 -6.066 21.920 24.889 Atomic orbital electron populations 1.22464 0.98538 1.00752 1.01160 1.20102 0.92150 0.95430 0.84238 0.92289 1.42729 1.79780 1.09326 1.07078 1.19045 1.36897 0.95613 0.85642 0.89173 1.24674 1.01465 0.97395 0.95589 1.69693 1.52398 1.35554 1.00398 0.86561 0.78130 0.86944 0.76831 1.21162 1.21851 1.20478 1.22745 0.94853 1.00454 0.94612 0.89992 1.22602 0.96819 1.04619 0.91376 1.22340 0.87519 0.98699 0.95328 1.48452 1.16028 1.65827 1.04816 1.16664 0.86218 0.78116 0.79944 1.90870 1.26065 1.48188 1.74891 1.20102 0.87026 1.14703 0.94397 1.21089 0.97175 0.97340 0.91457 1.19588 0.96980 1.16221 0.92119 1.17391 0.81352 0.75577 0.87553 1.43677 1.15373 1.70759 1.12128 1.90837 1.52238 1.51275 1.47825 1.22447 0.97669 1.01730 0.85574 1.42530 1.11482 1.48829 1.09761 0.73208 1.22345 0.92322 0.99681 0.86257 0.91964 0.93618 0.93922 0.80744 0.93028 0.89512 0.89346 0.91502 0.91722 0.82285 0.77423 0.76583 0.80216 0.90658 0.89895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.71 9.24 37.16 0.34 -2.37 16 2 C 0.19 3.18 2.40 -67.93 -0.16 3.02 16 3 H 0.06 1.03 8.07 -51.93 -0.42 0.61 16 4 N -0.75 -15.74 4.68 -53.42 -0.25 -15.99 16 5 C -0.24 -6.33 10.41 -15.06 -0.16 -6.49 16 6 H 0.09 2.56 8.06 -52.48 -0.42 2.14 16 7 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 8 N -0.93 -28.13 13.97 55.49 0.78 -27.35 16 9 Si 0.88 20.82 27.73 -169.99 -4.71 16.11 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.28 -5.96 6.52 56.52 0.37 -5.60 16 13 C -0.11 -1.40 2.63 -88.47 -0.23 -1.63 16 14 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 15 C -0.12 -1.32 6.19 -24.90 -0.15 -1.48 16 16 C 0.08 0.74 5.11 -3.06 -0.02 0.73 16 17 N -0.62 -7.23 3.33 -172.00 -0.57 -7.80 16 18 C 0.60 8.08 7.82 -12.79 -0.10 7.98 16 19 O -0.52 -8.90 17.12 5.21 0.09 -8.81 16 20 C -0.05 -0.56 6.83 -82.41 -0.56 -1.12 16 21 C -0.04 -0.53 10.37 -39.10 -0.41 -0.93 16 22 C -0.24 -2.21 6.13 -105.02 -0.64 -2.85 16 23 C 0.59 5.84 8.09 -12.54 -0.10 5.74 16 24 N -0.86 -4.08 8.86 30.42 0.27 -3.81 16 25 O -0.54 -7.90 17.76 5.27 0.09 -7.81 16 26 C 0.07 0.38 11.43 -16.50 -0.19 0.19 16 27 N -0.53 -3.67 5.53 -9.30 -0.05 -3.72 16 28 H 0.42 2.07 4.83 -40.82 -0.20 1.87 16 29 C 0.12 1.45 5.52 -2.53 -0.01 1.44 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.04 0.58 7.60 -51.93 -0.39 0.19 16 33 H 0.36 7.48 5.66 -40.82 -0.23 7.25 16 34 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 35 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.09 1.08 8.04 -51.93 -0.42 0.66 16 37 H 0.07 0.46 7.22 -51.93 -0.37 0.08 16 38 H 0.06 0.45 7.06 -51.93 -0.37 0.08 16 39 H 0.16 2.04 8.06 -52.48 -0.42 1.62 16 40 H 0.40 0.53 7.74 -40.82 -0.32 0.21 16 41 H 0.40 1.54 8.93 -40.82 -0.36 1.17 16 42 H 0.18 0.13 7.44 -52.49 -0.39 -0.26 16 43 H 0.08 0.94 8.03 -51.93 -0.42 0.52 16 44 H 0.08 1.09 8.04 -51.93 -0.42 0.67 16 LS Contribution 363.03 15.07 5.47 5.47 Total: -1.00 -36.49 363.03 -7.39 -43.88 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -6.01 Total: 7.58 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: -2.49 Total: 2.26 kcal Atomic # 7 Polarization: -58.86 SS G_CDS: 0.17 Total: -58.69 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: 0.18 Total: -16.62 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.71 Total: 16.11 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -36.49 -7.39 -43.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699946876.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.819 kcal (2) G-P(sol) polarization free energy of solvation -36.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds