Wall clock time and date at job start Tue Mar 31 2020 12:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47189 * 2 1 4 4 N 1.46506 * 109.47182 * 240.00413 * 2 1 3 5 5 C 1.36939 * 120.00073 * 84.72333 * 4 2 1 6 6 H 1.08004 * 119.99859 * 0.02562 * 5 4 2 7 7 C 1.38805 * 119.99849 * 180.02562 * 5 4 2 8 8 N 1.31622 * 120.00455 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00168 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46615 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47374 * 119.99782 * 9 7 5 12 12 H 1.48495 * 109.47187 * 240.00172 * 9 7 5 13 13 C 1.52999 * 109.47197 * 120.00368 * 2 1 3 14 14 H 1.09001 * 110.88778 * 60.70258 * 13 2 1 15 15 C 1.55160 * 111.00302 * 296.81933 * 13 2 1 16 16 C 1.54325 * 102.94132 * 206.42591 * 15 13 2 17 17 N 1.47021 * 107.27144 * 22.18984 * 16 15 13 18 18 C 1.34777 * 125.64722 * 181.09744 * 17 16 15 19 19 O 1.21677 * 119.99986 * 179.97438 * 18 17 16 20 20 C 1.46813 * 120.00143 * 359.97438 * 18 17 16 21 21 C 1.36351 * 125.84958 * 179.71143 * 20 18 17 22 22 C 1.41304 * 107.01038 * 179.85154 * 21 20 18 23 23 C 1.47393 * 126.46665 * 180.19779 * 22 21 20 24 24 N 1.34777 * 120.00034 * 180.28317 * 23 22 21 25 25 O 1.21612 * 119.99521 * 0.27967 * 23 22 21 26 26 C 1.38212 * 107.07371 * 0.41099 * 22 21 20 27 27 N 1.34262 * 108.39803 * 359.74991 * 26 22 21 28 28 H 0.97001 * 125.39587 * 180.02562 * 27 26 22 29 29 C 1.47463 * 108.72631 * 1.02757 * 17 16 15 30 30 H 1.09002 * 109.47097 * 300.00189 * 1 2 3 31 31 H 1.09007 * 109.47360 * 59.99353 * 1 2 3 32 32 H 1.08997 * 109.47379 * 179.97438 * 1 2 3 33 33 H 0.97005 * 119.99811 * 265.00126 * 4 2 1 34 34 H 0.97000 * 120.00679 * 179.97438 * 8 7 5 35 35 H 1.09003 * 110.71766 * 324.78442 * 15 13 2 36 36 H 1.08998 * 110.72162 * 87.88500 * 15 13 2 37 37 H 1.08995 * 109.88537 * 141.60868 * 16 15 13 38 38 H 1.09000 * 109.87865 * 262.61903 * 16 15 13 39 39 H 1.08005 * 126.49360 * 359.97023 * 21 20 18 40 40 H 0.96992 * 120.00078 * 359.97438 * 24 23 22 41 41 H 0.97003 * 119.99611 * 179.97438 * 24 23 22 42 42 H 1.08002 * 125.80159 * 179.76468 * 26 22 21 43 43 H 1.08996 * 110.41202 * 217.08432 * 29 17 16 44 44 H 1.09002 * 110.35134 * 94.73909 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1437 -0.0087 -2.3772 6 1 1.8830 1.0382 -2.4266 7 6 2.6059 -0.6632 -3.5107 8 7 2.9242 -1.9389 -3.4504 9 14 2.7777 0.2670 -5.1215 10 1 2.3587 1.6781 -4.9253 11 1 4.1938 0.2281 -5.5671 12 1 1.9167 -0.3657 -6.1527 13 6 2.0400 -0.7213 1.2492 14 1 1.6997 -1.7567 1.2662 15 6 1.6092 0.0270 2.5383 16 6 2.7009 -0.3748 3.5524 17 7 3.8815 -0.7905 2.7810 18 6 5.0429 -1.2346 3.3008 19 8 5.9570 -1.5532 2.5635 20 6 5.2052 -1.3341 4.7565 21 6 6.3208 -1.7707 5.4076 22 6 6.0458 -1.7001 6.7918 23 6 6.9615 -2.0675 7.8868 24 7 6.5597 -1.9534 9.1682 25 8 8.0795 -2.4738 7.6339 26 6 4.7544 -1.2260 6.9253 27 7 4.2542 -1.0079 5.6986 28 1 3.3643 -0.6732 5.5060 29 6 3.5842 -0.6428 1.3442 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5140 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 2.2490 -1.6318 -1.1527 34 1 3.2468 -2.3964 -4.2426 35 1 1.6106 1.1051 2.3771 36 1 0.6275 -0.3106 2.8704 37 1 2.9520 0.4774 4.1839 38 1 2.3480 -1.2016 4.1688 39 1 7.2411 -2.1051 4.9518 40 1 5.6681 -1.6290 9.3699 41 1 7.1623 -2.1956 9.8888 42 1 4.2358 -1.0592 7.8579 43 1 4.0408 -1.4533 0.7762 44 1 3.9379 0.3222 0.9811 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699946877.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:10 Heat of formation + Delta-G solvation = -10.741385 kcal Electronic energy + Delta-G solvation = -26455.643019 eV Core-core repulsion = 22601.979785 eV Total energy + Delta-G solvation = -3853.663234 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.95395 -39.82912 -38.95092 -37.76244 -35.34636 -33.95598 -32.65312 -31.61682 -30.78994 -29.85125 -28.71674 -28.10225 -24.47491 -24.04425 -23.64477 -21.76822 -21.53106 -20.50075 -19.86642 -19.75990 -18.34216 -17.25938 -16.97678 -16.71131 -16.27824 -16.11458 -15.47869 -15.06294 -14.82302 -14.40098 -14.13175 -14.04433 -13.77885 -13.74377 -13.52744 -13.15609 -12.85442 -12.71721 -12.66983 -12.25600 -12.16176 -11.78850 -11.42934 -10.95414 -10.88271 -10.68552 -10.63948 -10.35642 -10.25687 -10.11247 -9.97205 -9.90966 -9.66558 -9.44226 -8.94433 -8.84404 -8.57249 -6.99303 -5.77599 -3.07320 1.15152 1.57413 2.58721 2.85676 3.11555 3.35562 3.38552 3.43165 3.48323 3.51163 4.26846 4.36261 4.41249 4.53028 4.61395 4.66755 4.75174 4.92763 5.03005 5.18164 5.45650 5.49711 5.54838 5.69135 5.71702 5.77856 5.80839 5.88302 6.06089 6.09220 6.20487 6.27862 6.31140 6.41428 6.48187 6.51003 6.54801 6.77705 6.82845 6.99938 7.09247 7.42052 7.68797 8.07524 8.08406 8.40011 9.51654 10.07354 10.41510 11.44785 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024053 B = 0.002478 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.830737 B =11294.683028 C =12229.262747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.185 3.815 3 H 0.049 0.951 4 N -0.724 5.724 5 C -0.240 4.240 6 H 0.070 0.930 7 C -0.012 4.012 8 N -0.930 5.930 9 Si 0.905 3.095 10 H -0.281 1.281 11 H -0.291 1.291 12 H -0.292 1.292 13 C -0.102 4.102 14 H 0.083 0.917 15 C -0.122 4.122 16 C 0.088 3.912 17 N -0.619 5.619 18 C 0.598 3.402 19 O -0.517 6.517 20 C -0.047 4.047 21 C -0.047 4.047 22 C -0.238 4.238 23 C 0.594 3.406 24 N -0.857 5.857 25 O -0.543 6.543 26 C 0.065 3.935 27 N -0.527 5.527 28 H 0.422 0.578 29 C 0.121 3.879 30 H 0.036 0.964 31 H 0.054 0.946 32 H 0.046 0.954 33 H 0.384 0.616 34 H 0.255 0.745 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.160 0.840 40 H 0.397 0.603 41 H 0.403 0.597 42 H 0.180 0.820 43 H 0.088 0.912 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.884 3.889 27.567 28.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.075 3.925 3 H 0.067 0.933 4 N -0.366 5.366 5 C -0.371 4.371 6 H 0.088 0.912 7 C -0.208 4.208 8 N -0.578 5.578 9 Si 0.736 3.264 10 H -0.206 1.206 11 H -0.218 1.218 12 H -0.219 1.219 13 C -0.122 4.122 14 H 0.101 0.899 15 C -0.160 4.160 16 C -0.036 4.036 17 N -0.354 5.354 18 C 0.386 3.614 19 O -0.392 6.392 20 C -0.159 4.159 21 C -0.072 4.072 22 C -0.248 4.248 23 C 0.381 3.619 24 N -0.420 5.420 25 O -0.421 6.421 26 C -0.078 4.078 27 N -0.126 5.126 28 H 0.266 0.734 29 C 0.000 4.000 30 H 0.055 0.945 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.218 0.782 34 H 0.065 0.935 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.177 0.823 40 H 0.225 0.775 41 H 0.234 0.766 42 H 0.197 0.803 43 H 0.107 0.893 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.742 3.631 26.554 26.941 hybrid contribution -0.677 0.377 -0.441 0.892 sum -3.419 4.008 26.113 26.639 Atomic orbital electron populations 1.22454 0.99079 1.00914 1.00013 1.20144 0.91918 0.95158 0.85317 0.93262 1.42424 1.78180 1.10791 1.05160 1.19222 1.36784 0.93937 0.87154 0.91167 1.24742 1.02008 0.95969 0.98082 1.69662 1.50578 1.08733 1.28820 0.86154 0.77364 0.78743 0.84121 1.20605 1.21824 1.21941 1.22693 0.93849 1.00615 0.95004 0.89911 1.22666 0.97133 1.01696 0.94520 1.22216 0.87179 0.98381 0.95817 1.48519 1.12655 1.64961 1.09217 1.16675 0.81659 0.77745 0.85305 1.90910 1.39468 1.49314 1.59486 1.20189 0.91804 1.14687 0.89175 1.21109 0.97561 0.97427 0.91122 1.19582 0.95250 1.15804 0.94195 1.17407 0.85968 0.76312 0.82225 1.43672 1.19774 1.71033 1.07514 1.90842 1.20841 1.46405 1.83972 1.22403 0.94667 1.01716 0.88987 1.42496 1.15144 1.49209 1.05798 0.73376 1.22337 0.95524 1.03389 0.78776 0.94457 0.92681 0.93483 0.78232 0.93498 0.89945 0.89721 0.91763 0.91797 0.82263 0.77481 0.76625 0.80311 0.89324 0.90711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.61 9.30 37.16 0.35 -2.27 16 2 C 0.19 3.26 2.40 -67.93 -0.16 3.10 16 3 H 0.05 0.89 8.07 -51.93 -0.42 0.47 16 4 N -0.72 -17.08 4.90 -53.42 -0.26 -17.34 16 5 C -0.24 -6.43 9.93 -15.06 -0.15 -6.57 16 6 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 7 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 8 N -0.93 -27.91 13.06 55.49 0.72 -27.19 16 9 Si 0.90 22.29 29.55 -169.99 -5.02 17.26 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 11 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 12 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 13 C -0.10 -1.44 2.64 -88.47 -0.23 -1.67 16 14 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 15 C -0.12 -1.15 5.44 -24.89 -0.14 -1.28 16 16 C 0.09 0.76 5.10 -3.06 -0.02 0.74 16 17 N -0.62 -8.36 3.33 -171.98 -0.57 -8.93 16 18 C 0.60 9.25 7.82 -12.79 -0.10 9.15 16 19 O -0.52 -10.33 17.11 5.21 0.09 -10.24 16 20 C -0.05 -0.57 6.83 -82.40 -0.56 -1.14 16 21 C -0.05 -0.60 10.37 -39.10 -0.41 -1.01 16 22 C -0.24 -2.36 6.13 -105.02 -0.64 -3.01 16 23 C 0.59 6.20 8.09 -12.53 -0.10 6.10 16 24 N -0.86 -4.39 8.86 30.43 0.27 -4.12 16 25 O -0.54 -8.30 17.76 5.27 0.09 -8.21 16 26 C 0.06 0.38 11.43 -16.50 -0.19 0.19 16 27 N -0.53 -3.87 5.53 -9.30 -0.05 -3.93 16 28 H 0.42 2.03 4.83 -40.82 -0.20 1.83 16 29 C 0.12 1.95 6.16 -2.50 -0.02 1.94 16 30 H 0.04 0.46 7.38 -51.93 -0.38 0.08 16 31 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.38 9.81 7.80 -40.82 -0.32 9.49 16 34 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 35 H 0.08 0.74 8.04 -51.93 -0.42 0.33 16 36 H 0.08 0.64 8.11 -51.93 -0.42 0.22 16 37 H 0.06 0.41 7.22 -51.93 -0.38 0.03 16 38 H 0.06 0.42 7.07 -51.93 -0.37 0.05 16 39 H 0.16 2.28 8.06 -52.48 -0.42 1.86 16 40 H 0.40 0.61 7.74 -40.82 -0.32 0.29 16 41 H 0.40 1.67 8.93 -40.82 -0.36 1.31 16 42 H 0.18 0.14 7.44 -52.49 -0.39 -0.25 16 43 H 0.09 1.73 8.04 -51.93 -0.42 1.31 16 44 H 0.07 1.29 8.03 -51.93 -0.42 0.87 16 LS Contribution 365.88 15.07 5.51 5.51 Total: -1.00 -37.48 365.88 -7.72 -45.21 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -6.04 Total: 8.13 kcal Atomic # 6 Polarization: 6.31 SS G_CDS: -2.46 Total: 3.85 kcal Atomic # 7 Polarization: -61.61 SS G_CDS: 0.11 Total: -61.50 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: 0.18 Total: -18.45 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -37.48 -7.72 -45.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699946877.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.466 kcal (2) G-P(sol) polarization free energy of solvation -37.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds