Wall clock time and date at job start Tue Mar 31 2020 12:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47181 * 2 1 4 4 N 1.46504 * 109.47505 * 119.99675 * 2 1 3 5 5 C 1.36940 * 119.99722 * 275.00407 * 4 2 1 6 6 H 1.08002 * 120.00097 * 359.97438 * 5 4 2 7 7 C 1.38816 * 119.99860 * 179.97438 * 5 4 2 8 8 N 1.31617 * 119.99997 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99906 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47273 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47299 * 120.00053 * 9 7 5 12 12 H 1.48504 * 109.46539 * 239.99737 * 9 7 5 13 13 C 1.52996 * 109.47342 * 239.99858 * 2 1 3 14 14 H 1.09004 * 110.88786 * 302.42345 * 13 2 1 15 15 C 1.55155 * 111.00788 * 66.35138 * 13 2 1 16 16 C 1.54326 * 103.02542 * 153.38473 * 15 13 2 17 17 N 1.47023 * 107.26474 * 338.13727 * 16 15 13 18 18 C 1.34778 * 125.64849 * 178.85099 * 17 16 15 19 19 O 1.21686 * 119.99649 * 179.69505 * 18 17 16 20 20 C 1.46807 * 120.00123 * 359.69361 * 18 17 16 21 21 C 1.36353 * 125.84964 * 180.27408 * 20 18 17 22 22 C 1.41305 * 107.01192 * 180.13930 * 21 20 18 23 23 C 1.47386 * 126.46449 * 179.86957 * 22 21 20 24 24 N 1.34777 * 120.00263 * 179.71416 * 23 22 21 25 25 O 1.21609 * 120.00018 * 359.71020 * 23 22 21 26 26 C 1.38211 * 107.07292 * 359.60848 * 22 21 20 27 27 N 1.34270 * 108.39463 * 0.23776 * 26 22 21 28 28 H 0.96998 * 125.38328 * 180.02562 * 27 26 22 29 29 C 1.47425 * 108.70266 * 358.58824 * 17 16 15 30 30 H 1.09001 * 109.46802 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47167 * 300.00502 * 1 2 3 32 32 H 1.08999 * 109.47045 * 60.00317 * 1 2 3 33 33 H 0.96993 * 119.99857 * 94.99917 * 4 2 1 34 34 H 0.96994 * 120.00212 * 179.97438 * 8 7 5 35 35 H 1.09006 * 110.71694 * 271.94275 * 15 13 2 36 36 H 1.08999 * 110.71740 * 35.03362 * 15 13 2 37 37 H 1.09003 * 109.99192 * 218.66557 * 16 15 13 38 38 H 1.09004 * 109.78221 * 97.49346 * 16 15 13 39 39 H 1.08001 * 126.49436 * 359.97438 * 21 20 18 40 40 H 0.97001 * 120.00485 * 180.02562 * 24 23 22 41 41 H 0.97005 * 119.99790 * 359.72163 * 24 23 22 42 42 H 1.07995 * 125.80575 * 180.22163 * 26 22 21 43 43 H 1.09003 * 110.36786 * 143.19773 * 29 17 16 44 44 H 1.09000 * 110.36716 * 265.40512 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.1491 -0.0073 2.3758 6 1 1.8926 1.0407 2.4241 7 6 2.6114 -0.6617 3.5093 8 7 2.9236 -1.9390 3.4506 9 14 2.7891 0.2701 5.1185 10 1 2.3753 1.6825 4.9210 11 1 1.9281 -0.3585 6.1522 12 1 4.2059 0.2272 5.5614 13 6 2.0400 -0.7213 -1.2492 14 1 1.6548 -1.7399 -1.2943 15 6 1.6777 0.0687 -2.5345 16 6 2.7788 -0.3590 -3.5276 17 7 3.9165 -0.8466 -2.7343 18 6 5.0708 -1.3323 -3.2325 19 8 5.9503 -1.7041 -2.4782 20 6 5.2670 -1.4129 -4.6852 21 6 6.3794 -1.8865 -5.3157 22 6 6.1442 -1.7795 -6.7049 23 6 7.0711 -2.1687 -7.7827 24 7 6.7088 -2.0143 -9.0717 25 8 8.1629 -2.6290 -7.5091 26 6 4.8788 -1.2465 -6.8624 27 7 4.3564 -1.0283 -5.6449 28 1 3.4770 -0.6587 -5.4690 29 6 3.5881 -0.7103 -1.3035 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 2.2491 -1.6316 1.1527 34 1 3.2470 -2.3961 4.2425 35 1 0.6922 -0.2203 -2.8998 36 1 1.7201 1.1425 -2.3520 37 1 3.0870 0.4939 -4.1323 38 1 2.4062 -1.1566 -4.1705 39 1 7.2721 -2.2684 -4.8429 40 1 7.3186 -2.2708 -9.7810 41 1 5.8363 -1.6508 -9.2900 42 1 4.3928 -1.0403 -7.8045 43 1 3.9936 -1.5503 -0.7396 44 1 3.9765 0.2304 -0.9131 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699946878.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:14 Heat of formation + Delta-G solvation = -10.758446 kcal Electronic energy + Delta-G solvation = -26469.030915 eV Core-core repulsion = 22615.366941 eV Total energy + Delta-G solvation = -3853.663974 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.95076 -39.82430 -38.94877 -37.75413 -35.34427 -33.95319 -32.64606 -31.61390 -30.79236 -29.84569 -28.70507 -28.11113 -24.47650 -24.03758 -23.63980 -21.75118 -21.53741 -20.49731 -19.86393 -19.75749 -18.34212 -17.25719 -16.97346 -16.70674 -16.27372 -16.10815 -15.46950 -15.06162 -14.81759 -14.40428 -14.12844 -14.04426 -13.77544 -13.73895 -13.52341 -13.17371 -12.83826 -12.70242 -12.66783 -12.24574 -12.15946 -11.79829 -11.41677 -10.95560 -10.87453 -10.68414 -10.64218 -10.35401 -10.25970 -10.10587 -9.96985 -9.90734 -9.66222 -9.43885 -8.94407 -8.83785 -8.56633 -6.99264 -5.77479 -3.07176 1.15489 1.57759 2.59106 2.86344 3.12018 3.35801 3.38965 3.43229 3.48376 3.51229 4.27195 4.36587 4.41581 4.53060 4.61712 4.67031 4.75364 4.93007 5.03298 5.18541 5.46022 5.50082 5.55014 5.69508 5.71827 5.78128 5.80993 5.88997 6.06663 6.09351 6.21490 6.28706 6.30789 6.42180 6.49283 6.51285 6.55042 6.77685 6.83176 7.00136 7.09438 7.42783 7.68902 8.07839 8.09055 8.40147 9.51781 10.07474 10.41662 11.44923 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023711 B = 0.002495 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.593273 B =11218.626278 C =12167.514096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.185 3.815 3 H 0.049 0.951 4 N -0.724 5.724 5 C -0.240 4.240 6 H 0.070 0.930 7 C -0.012 4.012 8 N -0.930 5.930 9 Si 0.905 3.095 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.291 1.291 13 C -0.102 4.102 14 H 0.082 0.918 15 C -0.122 4.122 16 C 0.088 3.912 17 N -0.619 5.619 18 C 0.597 3.403 19 O -0.517 6.517 20 C -0.047 4.047 21 C -0.047 4.047 22 C -0.238 4.238 23 C 0.594 3.406 24 N -0.857 5.857 25 O -0.543 6.543 26 C 0.064 3.936 27 N -0.527 5.527 28 H 0.422 0.578 29 C 0.121 3.879 30 H 0.046 0.954 31 H 0.054 0.946 32 H 0.036 0.964 33 H 0.384 0.616 34 H 0.255 0.745 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.160 0.840 40 H 0.403 0.597 41 H 0.397 0.603 42 H 0.180 0.820 43 H 0.088 0.912 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.444 4.182 -27.550 28.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.075 3.925 3 H 0.067 0.933 4 N -0.366 5.366 5 C -0.371 4.371 6 H 0.088 0.912 7 C -0.208 4.208 8 N -0.578 5.578 9 Si 0.736 3.264 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.218 1.218 13 C -0.122 4.122 14 H 0.101 0.899 15 C -0.160 4.160 16 C -0.036 4.036 17 N -0.354 5.354 18 C 0.386 3.614 19 O -0.392 6.392 20 C -0.158 4.158 21 C -0.072 4.072 22 C -0.248 4.248 23 C 0.381 3.619 24 N -0.420 5.420 25 O -0.421 6.421 26 C -0.078 4.078 27 N -0.126 5.126 28 H 0.266 0.734 29 C 0.000 4.000 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.055 0.945 33 H 0.218 0.782 34 H 0.065 0.935 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.177 0.823 40 H 0.234 0.766 41 H 0.225 0.775 42 H 0.197 0.803 43 H 0.106 0.894 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.346 3.859 -26.515 26.896 hybrid contribution -0.641 0.425 0.424 0.878 sum -2.987 4.284 -26.091 26.609 Atomic orbital electron populations 1.22448 0.99068 1.00916 1.00003 1.20147 0.91932 0.95149 0.85311 0.93262 1.42419 1.78152 1.10740 1.05251 1.19223 1.36850 0.93823 0.87230 0.91169 1.24744 1.02022 0.95950 0.98077 1.69660 1.50618 1.08630 1.28856 0.86154 0.77370 0.78744 0.84117 1.20609 1.21932 1.21832 1.22693 0.94061 1.00353 0.95059 0.89939 1.22665 0.97142 1.01455 0.94764 1.22226 0.88023 0.97797 0.95550 1.48516 1.14842 1.62783 1.09224 1.16675 0.81343 0.77962 0.85421 1.90914 1.41445 1.48554 1.58242 1.20188 0.93040 1.13689 0.88918 1.21110 0.97338 0.97492 0.91290 1.19580 0.96054 1.14988 0.94202 1.17404 0.85658 0.76674 0.82173 1.43676 1.21786 1.69124 1.07414 1.90841 1.22620 1.45177 1.83419 1.22402 0.94593 1.01544 0.89247 1.42495 1.16527 1.47891 1.05734 0.73380 1.22321 0.95097 1.03592 0.78982 0.93481 0.92674 0.94479 0.78225 0.93491 0.89748 0.89950 0.91723 0.91817 0.82264 0.76627 0.77483 0.80313 0.89350 0.90661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.61 9.34 37.16 0.35 -2.27 16 2 C 0.19 3.26 2.41 -67.93 -0.16 3.10 16 3 H 0.05 0.89 8.05 -51.93 -0.42 0.47 16 4 N -0.72 -17.08 4.82 -53.42 -0.26 -17.33 16 5 C -0.24 -6.43 9.93 -15.06 -0.15 -6.58 16 6 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 7 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 8 N -0.93 -27.92 13.06 55.49 0.72 -27.20 16 9 Si 0.90 22.29 29.55 -169.99 -5.02 17.27 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 11 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 12 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 13 C -0.10 -1.44 2.63 -88.47 -0.23 -1.67 16 14 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 15 C -0.12 -1.15 5.58 -24.90 -0.14 -1.29 16 16 C 0.09 0.76 5.10 -3.06 -0.02 0.74 16 17 N -0.62 -8.40 3.33 -172.00 -0.57 -8.98 16 18 C 0.60 9.30 7.82 -12.80 -0.10 9.20 16 19 O -0.52 -10.38 17.12 5.20 0.09 -10.29 16 20 C -0.05 -0.57 6.83 -82.41 -0.56 -1.14 16 21 C -0.05 -0.61 10.37 -39.10 -0.41 -1.01 16 22 C -0.24 -2.37 6.13 -105.02 -0.64 -3.01 16 23 C 0.59 6.21 8.09 -12.54 -0.10 6.11 16 24 N -0.86 -4.41 8.86 30.42 0.27 -4.14 16 25 O -0.54 -8.32 17.76 5.27 0.09 -8.23 16 26 C 0.06 0.38 11.43 -16.50 -0.19 0.19 16 27 N -0.53 -3.89 5.53 -9.30 -0.05 -3.94 16 28 H 0.42 2.04 4.83 -40.82 -0.20 1.84 16 29 C 0.12 1.97 6.08 -2.53 -0.02 1.96 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.04 0.46 7.50 -51.93 -0.39 0.07 16 33 H 0.38 9.81 7.80 -40.82 -0.32 9.50 16 34 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 35 H 0.08 0.63 8.13 -51.93 -0.42 0.21 16 36 H 0.08 0.75 8.01 -51.93 -0.42 0.33 16 37 H 0.06 0.42 7.25 -51.93 -0.38 0.04 16 38 H 0.06 0.42 7.05 -51.93 -0.37 0.05 16 39 H 0.16 2.29 8.06 -52.49 -0.42 1.87 16 40 H 0.40 1.68 8.93 -40.82 -0.36 1.32 16 41 H 0.40 0.62 7.74 -40.82 -0.32 0.30 16 42 H 0.18 0.14 7.44 -52.49 -0.39 -0.25 16 43 H 0.09 1.73 8.04 -51.93 -0.42 1.32 16 44 H 0.08 1.32 8.04 -51.93 -0.42 0.90 16 LS Contribution 366.01 15.07 5.52 5.52 Total: -1.00 -37.50 366.01 -7.72 -45.22 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -6.05 Total: 8.20 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: -2.47 Total: 3.91 kcal Atomic # 7 Polarization: -61.71 SS G_CDS: 0.11 Total: -61.59 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: 0.18 Total: -18.52 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -37.50 -7.72 -45.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699946878.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.466 kcal (2) G-P(sol) polarization free energy of solvation -37.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds