Wall clock time and date at job start Tue Mar 31 2020 12:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09009 * 109.47314 * 2 1 4 4 C 1.53004 * 109.47375 * 239.99982 * 2 1 3 5 5 N 1.46494 * 109.47399 * 185.00177 * 4 2 1 6 6 C 1.34778 * 120.00081 * 180.02562 * 5 4 2 7 7 O 1.21276 * 119.99603 * 359.97438 * 6 5 4 8 8 C 1.50703 * 119.99836 * 179.97438 * 6 5 4 9 9 N 1.46502 * 109.46764 * 179.97438 * 8 6 5 10 10 C 1.34780 * 119.99919 * 179.97438 * 9 8 6 11 11 O 1.21587 * 119.99639 * 359.97438 * 10 9 8 12 12 N 1.34773 * 119.99709 * 179.97438 * 10 9 8 13 13 C 1.39952 * 119.99734 * 185.31876 * 12 10 9 14 14 C 1.38863 * 120.07100 * 33.31030 * 13 12 10 15 15 C 1.38107 * 119.93134 * 179.97438 * 14 13 12 16 16 C 1.38286 * 120.06964 * 359.97438 * 15 14 13 17 17 C 1.38276 * 120.13608 * 0.04779 * 16 15 14 18 18 C 1.38112 * 120.07571 * 359.95397 * 17 16 15 19 19 N 1.46504 * 109.47428 * 119.99509 * 2 1 3 20 20 C 1.36926 * 120.00411 * 275.00514 * 19 2 1 21 21 H 1.08006 * 120.00141 * 359.97438 * 20 19 2 22 22 C 1.38813 * 120.00356 * 179.97438 * 20 19 2 23 23 N 1.31623 * 119.99805 * 0.02562 * 22 20 19 24 24 Si 1.86793 * 120.00283 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47305 * 59.99917 * 24 22 20 26 26 H 1.48498 * 109.47340 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47436 * 300.00211 * 24 22 20 28 28 H 1.09001 * 109.47125 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46776 * 300.00340 * 1 2 3 30 30 H 1.08994 * 109.47203 * 59.99780 * 1 2 3 31 31 H 1.08997 * 109.46663 * 64.99484 * 4 2 1 32 32 H 1.09003 * 109.46645 * 305.00186 * 4 2 1 33 33 H 0.96999 * 120.00021 * 359.97438 * 5 4 2 34 34 H 1.08995 * 109.47102 * 59.99612 * 8 6 5 35 35 H 1.08999 * 109.47042 * 299.99266 * 8 6 5 36 36 H 0.97000 * 120.00322 * 359.97438 * 9 8 6 37 37 H 0.96998 * 120.00594 * 5.32027 * 12 10 9 38 38 H 1.08008 * 120.03242 * 359.71162 * 14 13 12 39 39 H 1.08003 * 119.96669 * 179.97438 * 15 14 13 40 40 H 1.08004 * 119.93091 * 180.02562 * 16 15 14 41 41 H 1.08004 * 119.95999 * 179.97438 * 17 16 15 42 42 H 1.07992 * 120.03641 * 179.97438 * 18 17 16 43 43 H 0.97004 * 119.99140 * 94.99913 * 19 2 1 44 44 H 0.96994 * 119.99879 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5000 -0.8264 -1.1906 6 6 4.1731 -1.4283 -2.1912 7 8 3.5699 -1.8833 -3.1399 8 6 5.6750 -1.5360 -2.1310 9 7 6.1633 -2.2267 -3.3272 10 6 7.4843 -2.4378 -3.4913 11 8 8.2707 -2.0546 -2.6469 12 7 7.9335 -3.0737 -4.5915 13 6 9.2911 -3.3920 -4.7104 14 6 10.0312 -3.7168 -3.5812 15 6 11.3706 -4.0309 -3.7020 16 6 11.9748 -4.0228 -4.9459 17 6 11.2406 -3.6993 -6.0722 18 6 9.9008 -3.3842 -5.9581 19 7 2.0184 -0.6905 1.1962 20 6 2.1491 -0.0074 2.3757 21 1 1.8926 1.0406 2.4242 22 6 2.6114 -0.6618 3.5093 23 7 2.9245 -1.9389 3.4502 24 14 2.7904 0.2702 5.1181 25 1 1.4684 0.8080 5.5285 26 1 3.2994 -0.6481 6.1683 27 1 3.7464 1.3920 4.9367 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.7516 -0.1583 -2.1369 32 1 1.6054 -1.7198 -1.2951 33 1 3.9824 -0.4622 -0.4319 34 1 5.9637 -2.0989 -1.2435 35 1 6.1093 -0.5373 -2.0851 36 1 5.5360 -2.5321 -4.0010 37 1 7.3158 -3.3108 -5.3008 38 1 9.5608 -3.7196 -2.6090 39 1 11.9469 -4.2832 -2.8241 40 1 13.0223 -4.2692 -5.0379 41 1 11.7155 -3.6934 -7.0422 42 1 9.3281 -3.1313 -6.8380 43 1 2.2491 -1.6317 1.1526 44 1 3.2472 -2.3963 4.2423 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752893395.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:20 Heat of formation + Delta-G solvation = -24.823301 kcal Electronic energy + Delta-G solvation = -25543.060670 eV Core-core repulsion = 21688.786798 eV Total energy + Delta-G solvation = -3854.273872 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.89170 -39.65713 -38.66596 -36.49033 -34.99932 -34.56946 -33.68069 -31.96229 -31.09937 -30.01373 -28.87021 -27.84709 -25.32623 -23.68910 -23.15767 -22.60159 -20.94911 -20.42117 -20.15854 -18.89028 -18.09006 -17.42751 -16.59626 -16.33194 -16.14544 -15.99347 -15.39461 -15.10506 -14.79002 -14.67146 -14.26278 -14.06497 -13.96247 -13.55299 -13.38555 -13.15223 -12.93393 -12.75877 -12.27624 -12.16770 -11.97011 -11.90483 -11.47442 -11.43768 -10.89421 -10.80766 -10.64251 -10.43574 -10.31068 -10.10180 -9.85713 -9.76587 -9.36145 -9.12265 -9.03293 -8.80753 -8.29285 -7.10264 -5.86056 -3.16922 1.10192 1.21794 2.25099 2.66599 2.91110 3.37268 3.39422 3.43892 3.44771 3.66383 3.96981 4.50740 4.67505 4.75206 4.81422 4.96212 5.19793 5.27070 5.32612 5.36665 5.37868 5.40762 5.42309 5.51026 5.79652 5.85541 5.99116 6.05620 6.08825 6.11200 6.14713 6.23144 6.30736 6.39059 6.48748 6.61306 6.68176 6.72593 6.85538 6.95852 7.61160 7.64690 7.73161 8.27658 8.29896 8.31928 9.43208 9.96788 10.32287 11.35659 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016311 B = 0.002240 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.227345 B =12499.300850 C =13962.479291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.159 3.841 3 H 0.055 0.945 4 C 0.115 3.885 5 N -0.703 5.703 6 C 0.507 3.493 7 O -0.556 6.556 8 C 0.117 3.883 9 N -0.726 5.726 10 C 0.706 3.294 11 O -0.571 6.571 12 N -0.687 5.687 13 C 0.170 3.830 14 C -0.121 4.121 15 C -0.100 4.100 16 C -0.142 4.142 17 C -0.102 4.102 18 C -0.151 4.151 19 N -0.724 5.724 20 C -0.246 4.246 21 H 0.071 0.929 22 C -0.009 4.009 23 N -0.930 5.930 24 Si 0.907 3.093 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.285 1.285 28 H 0.049 0.951 29 H 0.058 0.942 30 H 0.039 0.961 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.415 0.585 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.409 0.591 37 H 0.408 0.592 38 H 0.138 0.862 39 H 0.125 0.875 40 H 0.121 0.879 41 H 0.124 0.876 42 H 0.124 0.876 43 H 0.385 0.615 44 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.620 -2.718 -19.554 22.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.048 3.952 3 H 0.072 0.928 4 C -0.009 4.009 5 N -0.354 5.354 6 C 0.292 3.708 7 O -0.435 6.435 8 C -0.011 4.011 9 N -0.384 5.384 10 C 0.406 3.594 11 O -0.448 6.448 12 N -0.334 5.334 13 C 0.075 3.925 14 C -0.142 4.142 15 C -0.118 4.118 16 C -0.161 4.161 17 C -0.120 4.120 18 C -0.172 4.172 19 N -0.366 5.366 20 C -0.377 4.377 21 H 0.089 0.911 22 C -0.206 4.206 23 N -0.577 5.577 24 Si 0.738 3.262 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.212 1.212 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.252 0.748 34 H 0.122 0.878 35 H 0.118 0.882 36 H 0.246 0.754 37 H 0.243 0.757 38 H 0.155 0.845 39 H 0.143 0.857 40 H 0.139 0.861 41 H 0.142 0.858 42 H 0.142 0.858 43 H 0.219 0.781 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 11.806 -2.536 -19.223 22.701 hybrid contribution -0.390 0.094 0.727 0.831 sum 11.416 -2.442 -18.495 21.872 Atomic orbital electron populations 1.22363 0.98231 1.01302 1.00428 1.20522 0.92764 0.95799 0.86081 0.92752 1.21744 0.78920 1.01336 0.98901 1.45884 1.08576 1.57925 1.23051 1.20362 0.89342 0.78195 0.82874 1.90651 1.69978 1.48996 1.33909 1.20961 0.91461 0.99759 0.88886 1.44715 1.05721 1.62938 1.25028 1.15769 0.82584 0.78827 0.82198 1.90976 1.54674 1.55734 1.43368 1.42577 1.07945 1.61343 1.21582 1.17518 0.82758 0.97871 0.94361 1.21265 0.94675 0.99331 0.98881 1.21076 0.94367 0.98740 0.97652 1.21127 1.00028 1.02196 0.92702 1.20902 0.93333 0.99069 0.98721 1.20851 0.95489 1.04855 0.96006 1.42462 1.78105 1.10804 1.05244 1.19161 1.37316 0.93873 0.87329 0.91135 1.24754 1.01846 0.95919 0.98074 1.69645 1.50304 1.08622 1.29151 0.86278 0.77775 0.78618 0.83522 1.21299 1.21714 1.21193 0.93194 0.92256 0.94189 0.91631 0.91615 0.74843 0.87808 0.88246 0.75388 0.75651 0.84458 0.85723 0.86103 0.85811 0.85813 0.78091 0.93329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.69 9.49 37.16 0.35 -2.33 16 2 C 0.16 2.81 3.05 -67.93 -0.21 2.60 16 3 H 0.05 0.96 8.08 -51.92 -0.42 0.54 16 4 C 0.12 1.81 5.23 -4.04 -0.02 1.79 16 5 N -0.70 -10.59 5.39 -60.30 -0.32 -10.92 16 6 C 0.51 7.36 7.90 -10.98 -0.09 7.27 16 7 O -0.56 -9.22 15.67 5.56 0.09 -9.13 16 8 C 0.12 1.47 6.15 -5.19 -0.03 1.44 16 9 N -0.73 -8.50 5.53 -66.41 -0.37 -8.87 16 10 C 0.71 9.05 8.30 -86.92 -0.72 8.32 16 11 O -0.57 -9.29 14.03 5.29 0.07 -9.22 16 12 N -0.69 -6.83 5.35 -14.22 -0.08 -6.91 16 13 C 0.17 1.83 6.28 -83.69 -0.53 1.30 16 14 C -0.12 -1.43 8.66 -39.40 -0.34 -1.77 16 15 C -0.10 -0.97 10.04 -39.61 -0.40 -1.37 16 16 C -0.14 -1.18 10.04 -39.55 -0.40 -1.58 16 17 C -0.10 -0.81 10.04 -39.61 -0.40 -1.20 16 18 C -0.15 -1.31 9.96 -39.40 -0.39 -1.70 16 19 N -0.72 -16.31 4.56 -53.42 -0.24 -16.56 16 20 C -0.25 -6.30 9.93 -15.06 -0.15 -6.45 16 21 H 0.07 1.76 7.83 -52.48 -0.41 1.35 16 22 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 23 N -0.93 -26.71 13.06 55.49 0.72 -25.99 16 24 Si 0.91 21.50 29.55 -169.99 -5.02 16.48 16 25 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 27 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.41 6.40 8.14 -40.82 -0.33 6.06 16 34 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 36 H 0.41 4.33 7.46 -40.82 -0.30 4.03 16 37 H 0.41 2.75 8.83 -40.82 -0.36 2.39 16 38 H 0.14 1.85 6.40 -52.48 -0.34 1.52 16 39 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 40 H 0.12 0.73 8.06 -52.48 -0.42 0.31 16 41 H 0.12 0.68 8.06 -52.48 -0.42 0.25 16 42 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 43 H 0.39 9.45 7.80 -40.82 -0.32 9.13 16 44 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 377.11 15.07 5.68 5.68 Total: -1.00 -32.04 377.11 -9.15 -41.19 By element: Atomic # 1 Polarization: 24.53 SS G_CDS: -6.27 Total: 18.26 kcal Atomic # 6 Polarization: 9.39 SS G_CDS: -3.41 Total: 5.98 kcal Atomic # 7 Polarization: -68.95 SS G_CDS: -0.29 Total: -69.24 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: 0.16 Total: -18.35 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.04 -9.15 -41.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752893395.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.368 kcal (2) G-P(sol) polarization free energy of solvation -32.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds