Wall clock time and date at job start Tue Mar 31 2020 12:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21272 * 120.00067 * 2 1 4 4 N 1.34780 * 119.99792 * 180.02562 * 2 1 3 5 5 C 1.39463 * 119.99599 * 185.26994 * 4 2 1 6 6 C 1.39368 * 120.39630 * 32.87806 * 5 4 2 7 7 C 1.38294 * 118.43034 * 179.97438 * 6 5 4 8 8 C 1.39483 * 119.14585 * 0.02562 * 7 6 5 9 9 C 1.47919 * 119.64186 * 179.97438 * 8 7 6 10 10 O 1.21543 * 119.99868 * 0.02562 * 9 8 7 11 11 N 1.34782 * 119.99884 * 180.02562 * 9 8 7 12 12 C 1.46494 * 119.99403 * 180.27798 * 11 9 8 13 13 C 1.53009 * 109.46874 * 179.72380 * 12 11 9 14 14 C 1.52995 * 109.46999 * 179.97438 * 13 12 11 15 15 H 1.08997 * 109.47634 * 54.99884 * 14 13 12 16 16 C 1.53001 * 109.46927 * 174.99975 * 14 13 12 17 17 N 1.46502 * 109.47036 * 294.99380 * 14 13 12 18 18 C 1.36935 * 119.99987 * 155.00293 * 17 14 13 19 19 H 1.08003 * 119.99706 * 0.02562 * 18 17 14 20 20 C 1.38812 * 120.00372 * 180.02562 * 18 17 14 21 21 N 1.31625 * 119.99845 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00319 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47058 * 59.99850 * 22 20 18 24 24 H 1.48502 * 109.46869 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46741 * 299.99659 * 22 20 18 26 26 N 1.32819 * 120.71625 * 0.25810 * 8 7 6 27 27 C 1.31349 * 121.70943 * 359.46907 * 26 8 7 28 28 H 1.08993 * 109.47248 * 269.99861 * 1 2 3 29 29 H 1.09001 * 109.47015 * 30.00150 * 1 2 3 30 30 H 1.08999 * 109.47480 * 149.99812 * 1 2 3 31 31 H 0.96997 * 120.00010 * 5.26526 * 4 2 1 32 32 H 1.07999 * 120.78459 * 359.96333 * 6 5 4 33 33 H 1.08000 * 120.42730 * 180.02562 * 7 6 5 34 34 H 0.96998 * 119.99861 * 359.97438 * 11 9 8 35 35 H 1.08996 * 109.47301 * 299.71583 * 12 11 9 36 36 H 1.08993 * 109.47797 * 59.72229 * 12 11 9 37 37 H 1.09002 * 109.46746 * 300.00020 * 13 12 11 38 38 H 1.08993 * 109.47032 * 59.99380 * 13 12 11 39 39 H 1.09000 * 109.47046 * 179.97438 * 16 14 13 40 40 H 1.09000 * 109.47050 * 299.99691 * 16 14 13 41 41 H 1.08996 * 109.47472 * 59.99853 * 16 14 13 42 42 H 0.97001 * 120.00435 * 335.00470 * 17 14 13 43 43 H 0.96993 * 120.00150 * 180.02562 * 21 20 18 44 44 H 1.07996 * 119.60840 * 180.28823 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0502 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.5710 -1.1698 0.1104 6 6 4.2202 -0.1929 0.8631 7 6 5.6000 -0.2343 0.9460 8 6 6.2906 -1.2452 0.2776 9 6 7.7666 -1.2996 0.3584 10 8 8.3710 -0.4666 1.0049 11 7 8.4413 -2.2730 -0.2851 12 6 9.9026 -2.3304 -0.2000 13 6 10.4140 -3.5247 -1.0083 14 6 11.9402 -3.5843 -0.9201 15 1 12.2431 -3.6062 0.1267 16 6 12.4428 -4.8469 -1.6230 17 7 12.5134 -2.4028 -1.5697 18 6 13.7543 -1.9544 -1.2033 19 1 14.3106 -2.4720 -0.4358 20 6 14.2973 -0.8347 -1.8184 21 7 13.6195 -0.2042 -2.7542 22 14 15.9903 -0.2234 -1.3191 23 1 16.9940 -1.2899 -1.5650 24 1 16.3388 0.9778 -2.1197 25 1 15.9842 0.1275 0.1238 26 7 5.6377 -2.1561 -0.4351 27 6 4.3277 -2.1491 -0.5306 28 1 -0.3633 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3634 -0.8899 -0.5138 31 1 1.6989 -2.0054 -0.0780 32 1 3.6589 0.5784 1.3695 33 1 6.1359 0.5065 1.5208 34 1 7.9589 -2.9380 -0.8007 35 1 10.3264 -1.4107 -0.6033 36 1 10.2019 -2.4420 0.8420 37 1 9.9901 -4.4444 -0.6051 38 1 10.1147 -3.4130 -2.0504 39 1 13.5302 -4.8891 -1.5605 40 1 12.0163 -5.7259 -1.1397 41 1 12.1399 -4.8250 -2.6698 42 1 12.0139 -1.9382 -2.2593 43 1 13.9990 0.5779 -3.1842 44 1 3.8313 -2.9091 -1.1157 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753007300.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:46 Heat of formation + Delta-G solvation = -28.366073 kcal Electronic energy + Delta-G solvation = -25504.405114 eV Core-core repulsion = 21649.977615 eV Total energy + Delta-G solvation = -3854.427498 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.35027 -40.02391 -38.73420 -36.52411 -35.62398 -34.35425 -32.65731 -32.16116 -31.53903 -29.82278 -28.93829 -27.93621 -24.97853 -24.05201 -23.61219 -22.45439 -21.38861 -20.59664 -19.75354 -18.60491 -17.91289 -17.56445 -17.11240 -16.70931 -15.94018 -15.45791 -15.26192 -14.95493 -14.81410 -14.67500 -14.19086 -14.06079 -13.72332 -13.46194 -13.38979 -13.29625 -12.98014 -12.79906 -12.73789 -12.41748 -11.97593 -11.49196 -11.40873 -11.00555 -10.85434 -10.76187 -10.68260 -10.59105 -10.32172 -10.20434 -10.02639 -9.89424 -9.60660 -9.56463 -8.88665 -8.82950 -8.63072 -6.88666 -5.68507 -2.97154 0.31671 0.93153 1.92636 2.38551 2.78169 3.27251 3.50371 3.54708 3.55614 3.72248 3.96172 4.08689 4.37991 4.49000 4.63178 4.66601 4.74203 4.76796 4.85758 5.20928 5.32811 5.36872 5.47579 5.48358 5.63169 5.70644 5.77405 5.82054 5.94579 6.14620 6.24118 6.28539 6.41305 6.46257 6.54326 6.67144 6.74176 6.78142 6.92769 7.12479 7.36202 7.45897 7.77242 7.77867 8.37428 8.49837 9.60950 10.18147 10.52743 11.54054 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.022565 B = 0.002104 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.556541 B =13301.652131 C =14028.064546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.509 3.491 3 O -0.519 6.519 4 N -0.669 5.669 5 C 0.111 3.889 6 C -0.088 4.088 7 C -0.088 4.088 8 C 0.067 3.933 9 C 0.565 3.435 10 O -0.530 6.530 11 N -0.707 5.707 12 C 0.120 3.880 13 C -0.132 4.132 14 C 0.174 3.826 15 H 0.049 0.951 16 C -0.163 4.163 17 N -0.723 5.723 18 C -0.237 4.237 19 H 0.069 0.931 20 C -0.014 4.014 21 N -0.933 5.933 22 Si 0.906 3.094 23 H -0.287 1.287 24 H -0.292 1.292 25 H -0.286 1.286 26 N -0.437 5.437 27 C 0.077 3.923 28 H 0.100 0.900 29 H 0.099 0.901 30 H 0.084 0.916 31 H 0.416 0.584 32 H 0.151 0.849 33 H 0.154 0.846 34 H 0.406 0.594 35 H 0.087 0.913 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.053 0.947 40 H 0.035 0.965 41 H 0.046 0.954 42 H 0.383 0.617 43 H 0.255 0.745 44 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.692 -7.406 5.930 32.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.298 3.702 3 O -0.394 6.394 4 N -0.315 5.315 5 C 0.013 3.987 6 C -0.116 4.116 7 C -0.109 4.109 8 C -0.072 4.072 9 C 0.349 3.651 10 O -0.406 6.406 11 N -0.357 5.357 12 C -0.003 4.003 13 C -0.171 4.171 14 C 0.064 3.936 15 H 0.067 0.933 16 C -0.223 4.223 17 N -0.365 5.365 18 C -0.369 4.369 19 H 0.087 0.913 20 C -0.210 4.210 21 N -0.581 5.581 22 Si 0.737 3.263 23 H -0.214 1.214 24 H -0.218 1.218 25 H -0.213 1.213 26 N -0.148 5.148 27 C -0.086 4.086 28 H 0.118 0.882 29 H 0.118 0.882 30 H 0.103 0.897 31 H 0.253 0.747 32 H 0.168 0.832 33 H 0.172 0.828 34 H 0.241 0.759 35 H 0.105 0.895 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.054 0.946 41 H 0.065 0.935 42 H 0.217 0.783 43 H 0.065 0.935 44 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -29.173 -6.604 6.053 30.517 hybrid contribution -0.247 0.368 -0.005 0.444 sum -29.420 -6.236 6.048 30.676 Atomic orbital electron populations 1.21897 0.90123 1.05582 1.05387 1.21152 0.91139 0.82976 0.74950 1.90792 1.70510 1.31160 1.46910 1.43515 1.04693 1.10422 1.72889 1.18996 0.84131 0.98361 0.97176 1.21586 0.94269 0.98886 0.96827 1.22086 0.93661 0.97682 0.97486 1.21261 0.94763 0.93522 0.97623 1.17736 0.85223 0.81972 0.80166 1.90833 1.68623 1.39347 1.41806 1.45953 1.08603 1.30100 1.51054 1.21532 0.77036 1.00900 1.00796 1.22058 0.98165 0.96640 1.00216 1.20156 0.89100 0.88163 0.96217 0.93271 1.22421 1.01588 0.97822 1.00487 1.42449 1.18814 1.29662 1.45603 1.19177 0.93375 1.07916 1.16401 0.91266 1.24732 0.98614 0.98502 0.99133 1.69646 1.37965 1.21969 1.28519 0.86288 0.84303 0.77984 0.77733 1.21404 1.21795 1.21273 1.67513 1.09167 1.23430 1.14660 1.22583 0.89056 0.98765 0.98184 0.88180 0.88242 0.89689 0.74744 0.83167 0.82848 0.75867 0.89497 0.91602 0.91846 0.91512 0.92759 0.94576 0.93524 0.78268 0.93535 0.81865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.32 10.31 36.00 0.37 0.05 16 2 C 0.51 3.25 7.69 -10.99 -0.08 3.17 16 3 O -0.52 -5.90 14.78 5.56 0.08 -5.82 16 4 N -0.67 -3.31 5.33 -9.74 -0.05 -3.37 16 5 C 0.11 0.94 6.31 -83.54 -0.53 0.41 16 6 C -0.09 -0.93 8.75 -39.14 -0.34 -1.27 16 7 C -0.09 -1.09 9.62 -39.10 -0.38 -1.46 16 8 C 0.07 0.92 6.75 -83.01 -0.56 0.36 16 9 C 0.57 9.43 7.80 -12.29 -0.10 9.33 16 10 O -0.53 -10.74 16.31 5.33 0.09 -10.65 16 11 N -0.71 -10.84 5.54 -61.23 -0.34 -11.18 16 12 C 0.12 2.10 5.56 -4.04 -0.02 2.08 16 13 C -0.13 -2.11 4.87 -26.73 -0.13 -2.24 16 14 C 0.17 3.41 2.89 -67.93 -0.20 3.22 16 15 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 16 C -0.16 -2.91 9.49 37.16 0.35 -2.55 16 17 N -0.72 -18.07 4.57 -53.43 -0.24 -18.31 16 18 C -0.24 -6.66 9.93 -15.06 -0.15 -6.81 16 19 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 20 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 21 N -0.93 -28.79 13.06 55.49 0.72 -28.06 16 22 Si 0.91 23.01 29.55 -169.99 -5.02 17.99 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.29 -7.50 7.11 56.52 0.40 -7.09 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 26 N -0.44 -5.08 9.52 -9.64 -0.09 -5.18 16 27 C 0.08 0.66 11.12 -17.34 -0.19 0.47 16 28 H 0.10 0.07 8.14 -51.93 -0.42 -0.35 16 29 H 0.10 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.08 -0.06 8.14 -51.93 -0.42 -0.48 16 31 H 0.42 0.39 8.82 -40.82 -0.36 0.03 16 32 H 0.15 1.55 6.47 -52.49 -0.34 1.21 16 33 H 0.15 1.89 7.63 -52.49 -0.40 1.49 16 34 H 0.41 5.28 7.79 -40.82 -0.32 4.96 16 35 H 0.09 1.87 7.75 -51.93 -0.40 1.47 16 36 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.38 10.25 7.80 -40.82 -0.32 9.93 16 43 H 0.25 7.67 8.31 -40.82 -0.34 7.33 16 44 H 0.16 0.78 8.06 -52.49 -0.42 0.36 16 LS Contribution 378.40 15.07 5.70 5.70 Total: -1.00 -36.94 378.40 -7.54 -44.48 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -6.33 Total: 10.15 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: -2.05 Total: 4.24 kcal Atomic # 7 Polarization: -66.10 SS G_CDS: 0.00 Total: -66.10 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: 0.17 Total: -16.47 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -5.02 Total: 17.99 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.94 -7.54 -44.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753007300.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.112 kcal (2) G-P(sol) polarization free energy of solvation -36.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds