Wall clock time and date at job start Tue Mar 31 2020 12:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47375 * 2 1 4 4 C 1.53000 * 109.47106 * 120.00053 * 2 1 3 5 5 C 1.52996 * 109.47297 * 185.00179 * 4 2 1 6 6 N 1.46499 * 109.47210 * 179.97438 * 5 4 2 7 7 C 1.34776 * 120.00470 * 179.97438 * 6 5 4 8 8 O 1.21550 * 119.99626 * 0.02562 * 7 6 5 9 9 C 1.47859 * 120.00668 * 179.97438 * 7 6 5 10 10 C 1.39613 * 120.10680 * 359.97438 * 9 7 6 11 11 C 1.37976 * 119.99426 * 179.97438 * 10 9 7 12 12 C 1.38260 * 120.22259 * 0.07002 * 11 10 9 13 13 C 1.38945 * 120.22315 * 359.95424 * 12 11 10 14 14 N 1.39974 * 119.99733 * 180.02562 * 13 12 11 15 15 C 1.34774 * 120.00019 * 144.89026 * 14 13 12 16 16 N 1.34777 * 120.00296 * 184.61713 * 15 14 13 17 17 O 1.21593 * 119.99545 * 4.61278 * 15 14 13 18 18 C 1.38630 * 119.99860 * 0.02562 * 13 12 11 19 19 N 1.46495 * 109.47283 * 239.99932 * 2 1 3 20 20 C 1.36943 * 120.00232 * 85.00123 * 19 2 1 21 21 H 1.07999 * 119.99242 * 359.97438 * 20 19 2 22 22 C 1.38805 * 120.00230 * 179.97438 * 20 19 2 23 23 N 1.31620 * 120.00046 * 179.97438 * 22 20 19 24 24 Si 1.86808 * 120.00095 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47162 * 89.99624 * 24 22 20 26 26 H 1.48500 * 109.46811 * 209.99889 * 24 22 20 27 27 H 1.48502 * 109.46984 * 329.99754 * 24 22 20 28 28 H 1.08997 * 109.46957 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47453 * 300.00408 * 1 2 3 30 30 H 1.09007 * 109.46677 * 59.99558 * 1 2 3 31 31 H 1.08996 * 109.47400 * 64.99577 * 4 2 1 32 32 H 1.09003 * 109.46755 * 305.00165 * 4 2 1 33 33 H 1.09000 * 109.47483 * 60.00123 * 5 4 2 34 34 H 1.09003 * 109.47206 * 299.99709 * 5 4 2 35 35 H 0.97008 * 120.00149 * 359.97438 * 6 5 4 36 36 H 1.08001 * 120.00598 * 0.04761 * 10 9 7 37 37 H 1.08006 * 119.89146 * 180.02562 * 11 10 9 38 38 H 1.08002 * 119.89140 * 179.97438 * 12 11 10 39 39 H 0.96998 * 120.00011 * 324.87980 * 14 13 12 40 40 H 0.96995 * 119.99721 * 359.97438 * 16 15 14 41 41 H 0.96995 * 120.00035 * 179.97438 * 16 15 14 42 42 H 1.08001 * 120.10651 * 179.74903 * 18 13 12 43 43 H 0.97001 * 119.99815 * 265.00295 * 19 2 1 44 44 H 0.96995 * 119.99755 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6133 1.3137 6 7 4.0530 -1.3034 2.5102 7 6 5.3739 -1.3396 2.7756 8 8 6.1601 -0.7992 2.0223 9 6 5.8667 -2.0356 3.9834 10 6 4.9656 -2.6557 4.8510 11 6 5.4280 -3.3049 5.9772 12 6 6.7826 -3.3430 6.2517 13 6 7.6874 -2.7285 5.3948 14 7 9.0578 -2.7705 5.6770 15 6 9.9506 -2.8563 4.6710 16 7 11.2634 -2.9905 4.9448 17 8 9.5716 -2.8128 3.5165 18 6 7.2329 -2.0740 4.2604 19 7 2.0183 -0.6906 -1.1961 20 6 2.1492 -0.0075 -2.3758 21 1 1.8919 1.0403 -2.4243 22 6 2.6124 -0.6617 -3.5089 23 7 2.7377 -0.0052 -4.6428 24 14 3.0567 -2.4742 -3.4251 25 1 1.8596 -3.2926 -3.7450 26 1 4.1326 -2.7660 -4.4062 27 1 3.5311 -2.8048 -2.0572 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.7516 -1.7715 1.2057 32 1 1.6053 -0.2617 2.1369 33 1 3.8532 0.4370 1.3575 34 1 3.9995 -1.0728 0.4260 35 1 3.4256 -1.7344 3.1116 36 1 3.9068 -2.6282 4.6401 37 1 4.7295 -3.7844 6.6471 38 1 7.1387 -3.8524 7.1350 39 1 9.3648 -2.7376 6.5965 40 1 11.5657 -3.0249 5.8658 41 1 11.9059 -3.0527 4.2208 42 1 7.9343 -1.5923 3.5953 43 1 2.2490 -1.6318 -1.1525 44 1 3.0610 -0.4625 -5.4348 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753019344.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:39 Heat of formation + Delta-G solvation = -25.796019 kcal Electronic energy + Delta-G solvation = -25936.218576 eV Core-core repulsion = 22081.902524 eV Total energy + Delta-G solvation = -3854.316052 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.02357 -39.82203 -38.31888 -36.68651 -35.11036 -34.46599 -34.04635 -32.23512 -31.41014 -30.00617 -29.43345 -28.18842 -24.59583 -23.55858 -23.35652 -22.23202 -21.42246 -20.61567 -19.87763 -18.80522 -18.60014 -17.53708 -17.26931 -16.42092 -15.98159 -15.76996 -15.53274 -15.48167 -14.90782 -14.74609 -14.37112 -13.97426 -13.92773 -13.67540 -13.59737 -13.07321 -12.74010 -12.47999 -12.23981 -12.13950 -11.90810 -11.84592 -11.18540 -10.99548 -10.85816 -10.72577 -10.60397 -10.46897 -10.36902 -10.14912 -9.98330 -9.73180 -9.50974 -9.22777 -8.89188 -8.81083 -8.51571 -7.20272 -5.69301 -3.04700 0.62495 1.06872 2.29342 2.62544 2.94589 3.25923 3.45224 3.49019 3.53732 3.73760 3.93660 4.51217 4.57051 4.67252 4.81579 4.87653 5.11603 5.17768 5.21715 5.26221 5.53324 5.56474 5.64273 5.69182 5.83170 5.95979 6.00595 6.06641 6.12069 6.15206 6.29120 6.30160 6.32713 6.41716 6.42190 6.54486 6.62241 6.70083 6.82788 7.01955 7.36897 7.62136 8.06707 8.11351 8.35450 8.49792 9.28142 10.00830 10.19839 11.49224 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015024 B = 0.002706 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.182520 B =10344.956669 C =11580.331196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.179 3.821 3 H 0.058 0.942 4 C -0.136 4.136 5 C 0.120 3.880 6 N -0.725 5.725 7 C 0.550 3.450 8 O -0.525 6.525 9 C -0.109 4.109 10 C -0.103 4.103 11 C -0.108 4.108 12 C -0.126 4.126 13 C 0.151 3.849 14 N -0.685 5.685 15 C 0.701 3.299 16 N -0.861 5.861 17 O -0.564 6.564 18 C -0.062 4.062 19 N -0.748 5.748 20 C -0.241 4.241 21 H 0.090 0.910 22 C 0.005 3.995 23 N -0.935 5.935 24 Si 0.882 3.118 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.277 1.277 28 H 0.044 0.956 29 H 0.039 0.961 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.395 0.605 36 H 0.128 0.872 37 H 0.133 0.867 38 H 0.128 0.872 39 H 0.407 0.593 40 H 0.397 0.603 41 H 0.420 0.580 42 H 0.156 0.844 43 H 0.360 0.640 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.302 -8.285 31.725 34.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.069 3.931 3 H 0.076 0.924 4 C -0.174 4.174 5 C -0.003 4.003 6 N -0.377 5.377 7 C 0.336 3.664 8 O -0.401 6.401 9 C -0.113 4.113 10 C -0.123 4.123 11 C -0.126 4.126 12 C -0.147 4.147 13 C 0.057 3.943 14 N -0.334 5.334 15 C 0.399 3.601 16 N -0.430 5.430 17 O -0.439 6.439 18 C -0.083 4.083 19 N -0.392 5.392 20 C -0.371 4.371 21 H 0.108 0.892 22 C -0.191 4.191 23 N -0.583 5.583 24 Si 0.713 3.287 25 H -0.212 1.212 26 H -0.218 1.218 27 H -0.203 1.203 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.230 0.770 36 H 0.146 0.854 37 H 0.151 0.849 38 H 0.146 0.854 39 H 0.243 0.757 40 H 0.225 0.775 41 H 0.253 0.747 42 H 0.173 0.827 43 H 0.193 0.807 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.477 -7.652 30.011 32.695 hybrid contribution 0.632 -1.673 0.850 1.980 sum 11.109 -9.325 30.861 34.099 Atomic orbital electron populations 1.22391 0.98607 1.00834 1.00505 1.20125 0.92052 0.95903 0.84971 0.92375 1.22111 0.93931 1.01711 0.99686 1.21489 0.94323 0.97579 0.86869 1.46019 1.06937 1.57147 1.27556 1.18222 0.82574 0.80388 0.85190 1.90834 1.55233 1.45154 1.48922 1.19932 0.93887 1.01341 0.96175 1.21315 0.99381 0.97309 0.94268 1.20845 0.94798 0.99612 0.97373 1.21015 0.93236 0.99820 1.00589 1.17345 0.81848 0.98375 0.96771 1.42473 1.04046 1.77556 1.09359 1.16007 0.81477 0.77761 0.84844 1.42951 1.06248 1.81368 1.12449 1.91095 1.78195 1.55911 1.18666 1.21465 0.94966 0.95549 0.96341 1.42828 1.79669 1.09443 1.07214 1.19056 1.36867 0.95595 0.85550 0.89180 1.24651 1.01388 0.97418 0.95610 1.69696 1.52767 1.35544 1.00256 0.86579 0.77994 0.86947 0.77199 1.21248 1.21770 1.20273 0.93641 0.94230 0.92240 0.91721 0.91391 0.91224 0.90115 0.76998 0.85389 0.84922 0.85368 0.75709 0.77467 0.74741 0.82696 0.80684 0.93121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.76 9.49 37.16 0.35 -2.41 16 2 C 0.18 3.35 2.89 -67.93 -0.20 3.16 16 3 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 4 C -0.14 -1.98 4.87 -26.73 -0.13 -2.11 16 5 C 0.12 2.00 5.56 -4.04 -0.02 1.98 16 6 N -0.72 -10.13 5.51 -61.25 -0.34 -10.47 16 7 C 0.55 9.08 7.77 -12.32 -0.10 8.98 16 8 O -0.52 -11.22 16.34 5.32 0.09 -11.13 16 9 C -0.11 -1.45 5.87 -104.99 -0.62 -2.07 16 10 C -0.10 -0.96 9.54 -39.16 -0.37 -1.33 16 11 C -0.11 -0.78 10.02 -39.67 -0.40 -1.18 16 12 C -0.13 -0.91 9.96 -39.31 -0.39 -1.31 16 13 C 0.15 1.51 6.29 -83.73 -0.53 0.98 16 14 N -0.69 -5.03 5.34 -14.25 -0.08 -5.11 16 15 C 0.70 6.89 8.68 -86.92 -0.75 6.13 16 16 N -0.86 -4.14 8.88 27.63 0.25 -3.90 16 17 O -0.56 -8.86 14.62 5.28 0.08 -8.78 16 18 C -0.06 -0.86 8.23 -38.98 -0.32 -1.18 16 19 N -0.75 -17.70 4.38 -53.43 -0.23 -17.93 16 20 C -0.24 -6.89 10.41 -15.06 -0.16 -7.04 16 21 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 22 C 0.00 0.15 5.50 -17.43 -0.10 0.05 16 23 N -0.93 -30.20 13.97 55.49 0.78 -29.42 16 24 Si 0.88 23.12 27.74 -169.99 -4.71 18.40 16 25 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 26 H -0.29 -7.81 7.11 56.52 0.40 -7.41 16 27 H -0.28 -6.92 6.52 56.52 0.37 -6.56 16 28 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.08 1.66 7.75 -51.93 -0.40 1.25 16 35 H 0.40 4.00 6.50 -40.82 -0.27 3.74 16 36 H 0.13 0.87 6.40 -52.49 -0.34 0.53 16 37 H 0.13 0.58 8.06 -52.48 -0.42 0.15 16 38 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 39 H 0.41 1.22 8.84 -40.82 -0.36 0.86 16 40 H 0.40 0.38 8.85 -40.82 -0.36 0.02 16 41 H 0.42 1.85 8.93 -40.82 -0.36 1.49 16 42 H 0.16 2.64 5.82 -52.49 -0.31 2.34 16 43 H 0.36 8.49 5.66 -40.82 -0.23 8.26 16 44 H 0.26 7.99 8.31 -40.82 -0.34 7.65 16 LS Contribution 370.76 15.07 5.59 5.59 Total: -1.00 -40.42 370.76 -8.34 -48.76 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -6.02 Total: 11.33 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: -3.73 Total: 2.66 kcal Atomic # 7 Polarization: -67.20 SS G_CDS: 0.37 Total: -66.83 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: 0.16 Total: -19.92 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -4.71 Total: 18.40 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -40.42 -8.34 -48.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753019344.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.965 kcal (2) G-P(sol) polarization free energy of solvation -40.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds