Wall clock time and date at job start Tue Mar 31 2020 12:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47433 * 2 1 4 4 C 1.53007 * 109.46909 * 239.99837 * 2 1 3 5 5 C 1.52999 * 109.46860 * 174.99820 * 4 2 1 6 6 N 1.46505 * 109.46892 * 180.02562 * 5 4 2 7 7 C 1.34769 * 119.99788 * 180.02562 * 6 5 4 8 8 O 1.21547 * 120.00456 * 359.97438 * 7 6 5 9 9 C 1.47868 * 120.00093 * 179.97438 * 7 6 5 10 10 C 1.39611 * 120.10550 * 359.97438 * 9 7 6 11 11 C 1.37987 * 119.99249 * 180.02562 * 10 9 7 12 12 C 1.38256 * 120.22035 * 359.74746 * 11 10 9 13 13 C 1.38942 * 120.22517 * 0.50725 * 12 11 10 14 14 N 1.39970 * 120.00084 * 179.76741 * 13 12 11 15 15 C 1.34781 * 120.00201 * 214.83303 * 14 13 12 16 16 N 1.34771 * 120.00295 * 175.38918 * 15 14 13 17 17 O 1.21590 * 119.99575 * 355.37975 * 15 14 13 18 18 C 1.38635 * 119.99723 * 359.49193 * 13 12 11 19 19 N 1.46494 * 109.47138 * 119.99810 * 2 1 3 20 20 C 1.36938 * 120.00533 * 274.99745 * 19 2 1 21 21 H 1.07998 * 119.99551 * 0.02562 * 20 19 2 22 22 C 1.38809 * 120.00389 * 179.97438 * 20 19 2 23 23 N 1.31618 * 119.99901 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 119.99894 * 0.02562 * 22 20 19 25 25 H 1.48506 * 109.47212 * 89.99805 * 24 22 20 26 26 H 1.48503 * 109.47132 * 209.99572 * 24 22 20 27 27 H 1.48502 * 109.47206 * 329.99843 * 24 22 20 28 28 H 1.08999 * 109.47433 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47054 * 300.00446 * 1 2 3 30 30 H 1.08999 * 109.47463 * 59.99723 * 1 2 3 31 31 H 1.08996 * 109.46986 * 55.00269 * 4 2 1 32 32 H 1.08995 * 109.47147 * 294.99887 * 4 2 1 33 33 H 1.08996 * 109.46955 * 60.00430 * 5 4 2 34 34 H 1.08995 * 109.47295 * 299.99976 * 5 4 2 35 35 H 0.96993 * 119.99807 * 359.97438 * 6 5 4 36 36 H 1.07997 * 120.00694 * 0.02562 * 10 9 7 37 37 H 1.08002 * 119.88426 * 180.02562 * 11 10 9 38 38 H 1.08001 * 119.88476 * 180.27934 * 12 11 10 39 39 H 0.97001 * 120.00393 * 34.82578 * 14 13 12 40 40 H 0.97000 * 119.99853 * 179.97438 * 16 15 14 41 41 H 0.97004 * 120.00093 * 359.72269 * 16 15 14 42 42 H 1.08000 * 120.10741 * 180.22850 * 18 13 12 43 43 H 0.97005 * 119.99773 * 95.00020 * 19 2 1 44 44 H 0.97002 * 119.99826 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3138 6 7 4.0530 -1.3035 -2.5103 7 6 5.3739 -1.3396 -2.7755 8 8 6.1600 -0.7992 -2.0223 9 6 5.8668 -2.0366 -3.9828 10 6 4.9659 -2.6585 -4.8492 11 6 5.4284 -3.3088 -5.9750 12 6 6.7825 -3.3427 -6.2519 13 6 7.6876 -2.7313 -5.3931 14 7 9.0579 -2.7727 -5.6755 15 6 9.9511 -2.8565 -4.6696 16 7 11.2639 -2.9901 -4.9435 17 8 9.5724 -2.8115 -3.5151 18 6 7.2330 -2.0754 -4.2595 19 7 2.0183 -0.6905 1.1961 20 6 2.1492 -0.0075 2.3758 21 1 1.8920 1.0403 2.4243 22 6 2.6114 -0.6619 3.5093 23 7 2.7376 -0.0052 4.6429 24 14 3.0556 -2.4744 3.4254 25 1 4.4884 -2.6166 3.0620 26 1 2.8155 -3.1046 4.7484 27 1 2.2159 -3.1429 2.3990 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.6054 -0.2618 -2.1370 32 1 1.7516 -1.7715 -1.2056 33 1 3.9994 -1.0728 -0.4261 34 1 3.8531 0.4369 -1.3574 35 1 3.4257 -1.7350 -3.1111 36 1 3.9070 -2.6307 -4.6385 37 1 4.7299 -3.7890 -6.6442 38 1 7.1383 -3.8493 -7.1369 39 1 9.3648 -2.7412 -6.5952 40 1 11.9067 -3.0500 -4.2195 41 1 11.5657 -3.0299 -5.8646 42 1 7.9347 -1.5964 -3.5927 43 1 2.2490 -1.6318 1.1526 44 1 3.0610 -0.4624 5.4349 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753019345.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:43 Heat of formation + Delta-G solvation = -25.717089 kcal Electronic energy + Delta-G solvation = -25933.910554 eV Core-core repulsion = 22079.597924 eV Total energy + Delta-G solvation = -3854.312630 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.02437 -39.82455 -38.32082 -36.68735 -35.11128 -34.46923 -34.04705 -32.23587 -31.41086 -30.00706 -29.43372 -28.18913 -24.59673 -23.55915 -23.35664 -22.23453 -21.42243 -20.61890 -19.87887 -18.80529 -18.60090 -17.53603 -17.26911 -16.42306 -15.98077 -15.77232 -15.53125 -15.48984 -14.90883 -14.74296 -14.37267 -13.97548 -13.92625 -13.67663 -13.59205 -13.07960 -12.74384 -12.47368 -12.23988 -12.15940 -11.90830 -11.84793 -11.18708 -10.97893 -10.85956 -10.73357 -10.60071 -10.46993 -10.35584 -10.14849 -10.01134 -9.72990 -9.50868 -9.22916 -8.89112 -8.81192 -8.51401 -7.20237 -5.69311 -3.04676 0.62452 1.06875 2.29268 2.62484 2.94464 3.25608 3.44879 3.49057 3.54242 3.73613 3.93636 4.51130 4.57012 4.67352 4.81572 4.87538 5.11534 5.17713 5.21664 5.25934 5.52315 5.56482 5.65001 5.68904 5.83104 5.95981 6.00559 6.06580 6.11982 6.15207 6.28967 6.30096 6.32389 6.41499 6.42165 6.53948 6.61930 6.69925 6.82714 7.02022 7.36866 7.61842 8.06706 8.11313 8.35174 8.49764 9.28124 10.00834 10.19854 11.49209 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015023 B = 0.002706 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.367054 B =10344.970540 C =11579.845249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.179 3.821 3 H 0.059 0.941 4 C -0.136 4.136 5 C 0.120 3.880 6 N -0.725 5.725 7 C 0.550 3.450 8 O -0.525 6.525 9 C -0.109 4.109 10 C -0.103 4.103 11 C -0.108 4.108 12 C -0.126 4.126 13 C 0.151 3.849 14 N -0.685 5.685 15 C 0.701 3.299 16 N -0.861 5.861 17 O -0.564 6.564 18 C -0.063 4.063 19 N -0.748 5.748 20 C -0.241 4.241 21 H 0.090 0.910 22 C 0.005 3.995 23 N -0.935 5.935 24 Si 0.881 3.119 25 H -0.283 1.283 26 H -0.292 1.292 27 H -0.278 1.278 28 H 0.044 0.956 29 H 0.058 0.942 30 H 0.039 0.961 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.395 0.605 36 H 0.128 0.872 37 H 0.133 0.867 38 H 0.128 0.872 39 H 0.407 0.593 40 H 0.420 0.580 41 H 0.397 0.603 42 H 0.156 0.844 43 H 0.360 0.640 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.319 -8.298 -31.720 34.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.070 3.930 3 H 0.077 0.923 4 C -0.175 4.175 5 C -0.002 4.002 6 N -0.377 5.377 7 C 0.336 3.664 8 O -0.401 6.401 9 C -0.113 4.113 10 C -0.123 4.123 11 C -0.126 4.126 12 C -0.147 4.147 13 C 0.057 3.943 14 N -0.334 5.334 15 C 0.399 3.601 16 N -0.430 5.430 17 O -0.439 6.439 18 C -0.084 4.084 19 N -0.391 5.391 20 C -0.371 4.371 21 H 0.108 0.892 22 C -0.190 4.190 23 N -0.583 5.583 24 Si 0.712 3.288 25 H -0.209 1.209 26 H -0.218 1.218 27 H -0.204 1.204 28 H 0.063 0.937 29 H 0.077 0.923 30 H 0.058 0.942 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.230 0.770 36 H 0.146 0.854 37 H 0.151 0.849 38 H 0.146 0.854 39 H 0.243 0.757 40 H 0.253 0.747 41 H 0.225 0.775 42 H 0.173 0.827 43 H 0.193 0.807 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.490 -7.661 -30.005 32.696 hybrid contribution 0.609 -1.684 -0.849 1.981 sum 11.099 -9.345 -30.854 34.095 Atomic orbital electron populations 1.22394 0.98645 1.00823 1.00491 1.20125 0.92031 0.95913 0.84981 0.92334 1.22113 0.93924 1.01726 0.99693 1.21486 0.94309 0.97614 0.86839 1.46017 1.06943 1.57132 1.27585 1.18222 0.82573 0.80393 0.85188 1.90835 1.55227 1.45149 1.48903 1.19933 0.93891 1.01321 0.96187 1.21316 0.99378 0.97296 0.94300 1.20846 0.94802 0.99601 0.97365 1.21008 0.93243 0.99888 1.00540 1.17344 0.81844 0.98362 0.96767 1.42474 1.04043 1.77566 1.09349 1.16006 0.81473 0.77765 0.84840 1.42953 1.06245 1.81362 1.12456 1.91094 1.78203 1.55901 1.18666 1.21474 0.94976 0.95529 0.96387 1.42829 1.79763 1.09324 1.07231 1.19053 1.36855 0.95493 0.85686 0.89179 1.24648 1.01409 0.97395 0.95596 1.69698 1.52733 1.35538 1.00291 0.86602 0.78701 0.86877 0.76667 1.20919 1.21833 1.20416 0.93660 0.92257 0.94236 0.91377 0.91713 0.90164 0.91185 0.76988 0.85388 0.84923 0.85371 0.75710 0.74738 0.77464 0.82672 0.80694 0.93123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.78 9.49 37.16 0.35 -2.42 16 2 C 0.18 3.35 2.89 -67.93 -0.20 3.16 16 3 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 4 C -0.14 -1.98 4.87 -26.73 -0.13 -2.11 16 5 C 0.12 1.99 5.56 -4.04 -0.02 1.96 16 6 N -0.72 -10.05 5.51 -61.25 -0.34 -10.39 16 7 C 0.55 9.03 7.77 -12.32 -0.10 8.94 16 8 O -0.52 -11.18 16.34 5.32 0.09 -11.09 16 9 C -0.11 -1.44 5.87 -104.99 -0.62 -2.06 16 10 C -0.10 -0.95 9.54 -39.16 -0.37 -1.33 16 11 C -0.11 -0.78 10.02 -39.67 -0.40 -1.18 16 12 C -0.13 -0.91 9.96 -39.31 -0.39 -1.31 16 13 C 0.15 1.51 6.29 -83.73 -0.53 0.98 16 14 N -0.69 -5.03 5.34 -14.25 -0.08 -5.10 16 15 C 0.70 6.88 8.68 -86.92 -0.75 6.13 16 16 N -0.86 -4.14 8.88 27.63 0.25 -3.89 16 17 O -0.56 -8.85 14.61 5.29 0.08 -8.78 16 18 C -0.06 -0.86 8.24 -38.98 -0.32 -1.18 16 19 N -0.75 -17.71 4.38 -53.43 -0.23 -17.94 16 20 C -0.24 -6.89 10.41 -15.06 -0.16 -7.05 16 21 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 22 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 23 N -0.93 -30.20 13.97 55.49 0.78 -29.42 16 24 Si 0.88 23.10 27.74 -169.99 -4.71 18.38 16 25 H -0.28 -7.55 7.11 56.52 0.40 -7.15 16 26 H -0.29 -7.72 7.11 56.52 0.40 -7.31 16 27 H -0.28 -6.81 6.52 56.52 0.37 -6.44 16 28 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.06 1.13 8.14 -51.92 -0.42 0.71 16 30 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.08 1.62 7.75 -51.93 -0.40 1.22 16 34 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.40 3.97 6.50 -40.82 -0.27 3.71 16 36 H 0.13 0.86 6.40 -52.49 -0.34 0.53 16 37 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 38 H 0.13 0.53 8.06 -52.49 -0.42 0.10 16 39 H 0.41 1.22 8.84 -40.82 -0.36 0.86 16 40 H 0.42 1.85 8.93 -40.82 -0.36 1.49 16 41 H 0.40 0.38 8.85 -40.82 -0.36 0.02 16 42 H 0.16 2.64 5.81 -52.49 -0.30 2.34 16 43 H 0.36 8.50 5.66 -40.82 -0.23 8.27 16 44 H 0.26 7.99 8.31 -40.82 -0.34 7.65 16 LS Contribution 370.75 15.07 5.59 5.59 Total: -1.00 -40.44 370.75 -8.34 -48.77 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -6.02 Total: 11.29 kcal Atomic # 6 Polarization: 6.32 SS G_CDS: -3.73 Total: 2.59 kcal Atomic # 7 Polarization: -67.13 SS G_CDS: 0.37 Total: -66.75 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: 0.16 Total: -19.87 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -4.71 Total: 18.38 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -40.44 -8.34 -48.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753019345.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.057 kcal (2) G-P(sol) polarization free energy of solvation -40.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds