Wall clock time and date at job start Tue Mar 31 2020 13:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.47364 * 2 1 4 4 C 1.36932 * 120.00243 * 275.38582 * 3 2 1 5 5 H 1.08009 * 120.00251 * 38.20232 * 4 3 2 6 6 C 1.38816 * 120.00254 * 218.19755 * 4 3 2 7 7 N 1.31623 * 119.99597 * 20.50280 * 6 4 3 8 8 Si 1.86798 * 120.00103 * 200.49939 * 6 4 3 9 9 H 1.48500 * 109.46963 * 60.00494 * 8 6 4 10 10 H 1.48501 * 109.46967 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47335 * 300.00123 * 8 6 4 12 12 C 1.46497 * 119.99738 * 95.38038 * 3 2 1 13 13 C 1.53001 * 109.47606 * 270.00141 * 12 3 2 14 14 N 1.46500 * 109.47248 * 180.02562 * 13 12 3 15 15 C 1.34778 * 119.99504 * 179.97438 * 14 13 12 16 16 O 1.21547 * 120.00389 * 0.02562 * 15 14 13 17 17 C 1.47868 * 119.99727 * 179.97438 * 15 14 13 18 18 C 1.39612 * 120.10885 * 359.97438 * 17 15 14 19 19 C 1.37975 * 119.99324 * 180.02562 * 18 17 15 20 20 C 1.38257 * 120.22610 * 359.74425 * 19 18 17 21 21 C 1.38947 * 120.21693 * 0.50858 * 20 19 18 22 22 N 1.39980 * 119.99489 * 179.76817 * 21 20 19 23 23 C 1.34784 * 119.99672 * 214.85887 * 22 21 20 24 24 N 1.34768 * 119.99721 * 175.05866 * 23 22 21 25 25 O 1.21593 * 119.99734 * 355.05310 * 23 22 21 26 26 C 1.38627 * 120.00106 * 359.49438 * 21 20 19 27 27 H 1.09001 * 109.46764 * 59.99646 * 1 2 3 28 28 H 1.08996 * 109.46896 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46930 * 300.00207 * 1 2 3 30 30 H 1.09006 * 109.46799 * 240.00408 * 2 1 3 31 31 H 1.08997 * 109.47385 * 119.99986 * 2 1 3 32 32 H 0.97000 * 119.99655 * 179.97438 * 7 6 4 33 33 H 1.09004 * 109.46893 * 150.00201 * 12 3 2 34 34 H 1.08995 * 109.47622 * 30.00534 * 12 3 2 35 35 H 1.09004 * 109.46946 * 60.00092 * 13 12 3 36 36 H 1.09001 * 109.47325 * 300.00211 * 13 12 3 37 37 H 0.96990 * 120.00363 * 0.02562 * 14 13 12 38 38 H 1.07998 * 120.00651 * 359.97438 * 18 17 15 39 39 H 1.08002 * 119.89173 * 180.02562 * 19 18 17 40 40 H 1.07996 * 119.89412 * 180.28203 * 20 19 18 41 41 H 0.96994 * 120.00002 * 34.85810 * 22 21 20 42 42 H 0.97001 * 119.99876 * 180.02562 * 24 23 22 43 43 H 0.96998 * 120.00250 * 359.71652 * 24 23 22 44 44 H 1.08003 * 120.10600 * 180.23582 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1417 2.0638 -1.1806 5 1 1.4027 1.9365 -1.9579 6 6 3.2166 2.9197 -1.3785 7 7 4.3047 2.7891 -0.6496 8 14 3.1187 4.2568 -2.6793 9 1 1.9874 5.1674 -2.3690 10 1 4.3866 5.0296 -2.6912 11 1 2.9039 3.6367 -4.0114 12 6 2.3747 2.0321 1.2631 13 6 1.1449 2.7374 1.8383 14 7 1.5014 3.3888 3.1011 15 6 0.5699 4.0761 3.7913 16 8 -0.5661 4.1551 3.3662 17 6 0.9296 4.7331 5.0662 18 6 2.2333 4.6424 5.5574 19 6 2.5662 5.2560 6.7475 20 6 1.6138 5.9660 7.4548 21 6 0.3123 6.0577 6.9770 22 7 -0.6495 6.7737 7.6993 23 6 -1.9303 6.3543 7.7157 24 7 -2.8358 6.9843 8.4897 25 8 -2.2686 5.4074 7.0319 26 6 -0.0323 5.4448 5.7823 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 5.0559 3.3869 -0.7881 33 1 3.1631 2.7636 1.0852 34 1 2.7279 1.2825 1.9712 35 1 0.3566 2.0059 2.0162 36 1 0.7917 3.4872 1.1302 37 1 2.4080 3.3261 3.4401 38 1 2.9810 4.0915 5.0062 39 1 3.5754 5.1851 7.1258 40 1 1.8814 6.4479 8.3835 41 1 -0.3942 7.5717 8.1880 42 1 -3.7575 6.6822 8.5018 43 1 -2.5650 7.7371 9.0383 44 1 -1.0425 5.5182 5.4074 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753094203.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:23 Heat of formation + Delta-G solvation = -16.220385 kcal Electronic energy + Delta-G solvation = -26323.274236 eV Core-core repulsion = 22469.373414 eV Total energy + Delta-G solvation = -3853.900822 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.89200 -39.57644 -38.08192 -36.24016 -34.97899 -34.15677 -33.86866 -31.84998 -31.27561 -29.86640 -29.18700 -27.42282 -24.53218 -23.60536 -23.39789 -21.64874 -21.28687 -20.38202 -20.07335 -18.68957 -18.43020 -17.18688 -16.61590 -16.16692 -15.76098 -15.59223 -15.33999 -15.07115 -14.78504 -14.62319 -14.21100 -13.85130 -13.75610 -13.62727 -13.29589 -12.94664 -12.47490 -12.34329 -12.04995 -11.97442 -11.70244 -11.46813 -11.07817 -10.73788 -10.72047 -10.58295 -10.50052 -10.35547 -10.07856 -10.05900 -9.83703 -9.79551 -9.48154 -9.03728 -8.52457 -8.40397 -8.32925 -6.58186 -5.80486 -3.40265 0.81891 1.24477 2.39533 2.74665 3.14107 3.38211 3.43513 3.48230 3.59641 3.94540 4.04018 4.49056 4.71003 4.77238 5.04706 5.08659 5.29017 5.32247 5.37858 5.59008 5.73565 5.96805 6.04593 6.10748 6.18257 6.22542 6.26381 6.32873 6.42595 6.43465 6.47793 6.51318 6.56442 6.74061 6.82815 6.94783 6.96422 7.08267 7.21595 7.45982 7.58206 7.82974 7.99855 8.19421 8.51688 8.65763 9.17929 9.79474 10.38065 11.19518 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016396 B = 0.002752 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.315552 B =10171.207908 C =10636.781076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.141 3.859 3 N -0.580 5.580 4 C -0.260 4.260 5 H 0.061 0.939 6 C 0.013 3.987 7 N -0.889 5.889 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.290 1.290 11 H -0.280 1.280 12 C 0.138 3.862 13 C 0.097 3.903 14 N -0.714 5.714 15 C 0.548 3.452 16 O -0.538 6.538 17 C -0.108 4.108 18 C -0.101 4.101 19 C -0.108 4.108 20 C -0.127 4.127 21 C 0.147 3.853 22 N -0.685 5.685 23 C 0.701 3.299 24 N -0.862 5.862 25 O -0.565 6.565 26 C -0.064 4.064 27 H 0.050 0.950 28 H 0.036 0.964 29 H 0.045 0.955 30 H 0.046 0.954 31 H 0.034 0.966 32 H 0.255 0.745 33 H 0.099 0.901 34 H 0.029 0.971 35 H 0.053 0.947 36 H 0.065 0.935 37 H 0.396 0.604 38 H 0.131 0.869 39 H 0.133 0.867 40 H 0.127 0.873 41 H 0.407 0.593 42 H 0.419 0.581 43 H 0.397 0.603 44 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.684 9.379 22.238 24.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.015 3.985 3 N -0.300 5.300 4 C -0.390 4.390 5 H 0.078 0.922 6 C -0.187 4.187 7 N -0.531 5.531 8 Si 0.727 3.273 9 H -0.208 1.208 10 H -0.216 1.216 11 H -0.206 1.206 12 C 0.010 3.990 13 C -0.028 4.028 14 N -0.365 5.365 15 C 0.334 3.666 16 O -0.416 6.416 17 C -0.112 4.112 18 C -0.121 4.121 19 C -0.126 4.126 20 C -0.148 4.148 21 C 0.053 3.947 22 N -0.334 5.334 23 C 0.399 3.601 24 N -0.431 5.431 25 O -0.440 6.440 26 C -0.085 4.085 27 H 0.069 0.931 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.116 0.884 34 H 0.047 0.953 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.231 0.769 38 H 0.149 0.851 39 H 0.151 0.849 40 H 0.145 0.855 41 H 0.242 0.758 42 H 0.251 0.749 43 H 0.225 0.775 44 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -5.508 8.658 21.251 23.599 hybrid contribution 0.228 1.468 0.163 1.494 sum -5.280 10.126 21.414 24.269 Atomic orbital electron populations 1.22394 0.99913 0.99083 1.01448 1.20880 0.91761 0.86963 0.98866 1.43593 1.76067 1.08291 1.02081 1.18980 1.04170 1.21687 0.94123 0.92175 1.25204 0.94199 1.01167 0.98114 1.69975 1.03110 1.37725 1.42281 0.86454 0.76944 0.82227 0.81693 1.20762 1.21587 1.20630 1.21061 0.94536 0.96955 0.86434 1.22495 1.01137 0.96598 0.82580 1.46049 1.12935 1.52973 1.24541 1.18232 0.85350 0.79122 0.83875 1.90770 1.20174 1.61058 1.69611 1.20020 0.94131 1.00827 0.96180 1.21391 0.95327 0.99010 0.96338 1.20853 0.99361 0.97503 0.94904 1.20982 0.92167 1.01430 1.00242 1.17339 0.88310 0.97479 0.91565 1.42460 1.06856 1.30283 1.53760 1.16002 0.80772 0.82549 0.80730 1.42951 1.12766 1.37962 1.49434 1.91079 1.78633 1.29457 1.44856 1.21440 1.01005 0.94813 0.91202 0.93121 0.94461 0.93608 0.93594 0.94722 0.93491 0.88374 0.95286 0.92858 0.91646 0.76940 0.85122 0.84930 0.85500 0.75783 0.74854 0.77493 0.82814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.26 10.21 37.16 0.38 -2.88 16 2 C 0.14 3.04 6.44 -4.04 -0.03 3.01 16 3 N -0.58 -14.38 2.43 -173.24 -0.42 -14.80 16 4 C -0.26 -7.08 9.45 -15.06 -0.14 -7.23 16 5 H 0.06 1.65 7.91 -52.48 -0.42 1.24 16 6 C 0.01 0.37 4.97 -17.43 -0.09 0.28 16 7 N -0.89 -24.93 11.46 55.49 0.64 -24.29 16 8 Si 0.90 21.68 29.60 -169.99 -5.03 16.64 16 9 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 10 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 C 0.14 3.13 5.44 -4.04 -0.02 3.11 16 13 C 0.10 2.07 6.00 -4.04 -0.02 2.05 16 14 N -0.71 -12.93 5.51 -61.24 -0.34 -13.27 16 15 C 0.55 10.49 7.77 -12.32 -0.10 10.39 16 16 O -0.54 -12.48 16.34 5.32 0.09 -12.39 16 17 C -0.11 -1.67 5.87 -104.99 -0.62 -2.29 16 18 C -0.10 -1.20 9.54 -39.17 -0.37 -1.58 16 19 C -0.11 -1.01 10.02 -39.67 -0.40 -1.41 16 20 C -0.13 -1.14 9.96 -39.31 -0.39 -1.53 16 21 C 0.15 1.69 6.30 -83.73 -0.53 1.16 16 22 N -0.68 -5.78 5.34 -14.25 -0.08 -5.85 16 23 C 0.70 7.38 8.68 -86.92 -0.75 6.62 16 24 N -0.86 -4.58 8.88 27.63 0.25 -4.34 16 25 O -0.57 -9.15 14.60 5.28 0.08 -9.08 16 26 C -0.06 -0.98 8.24 -38.99 -0.32 -1.30 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.04 0.90 6.65 -51.93 -0.35 0.55 16 30 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 31 H 0.03 0.69 7.83 -51.93 -0.41 0.28 16 32 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 33 H 0.10 2.48 5.53 -51.93 -0.29 2.19 16 34 H 0.03 0.61 7.86 -51.93 -0.41 0.20 16 35 H 0.05 1.17 6.65 -51.93 -0.35 0.82 16 36 H 0.07 1.59 8.14 -51.93 -0.42 1.16 16 37 H 0.40 5.99 6.50 -40.82 -0.27 5.72 16 38 H 0.13 1.33 6.40 -52.49 -0.34 1.00 16 39 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 40 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 41 H 0.41 1.68 8.84 -40.82 -0.36 1.32 16 42 H 0.42 1.97 8.93 -40.82 -0.36 1.61 16 43 H 0.40 0.62 8.85 -40.82 -0.36 0.26 16 44 H 0.15 2.83 5.80 -52.48 -0.30 2.52 16 LS Contribution 369.05 15.07 5.56 5.56 Total: -1.00 -36.64 369.05 -8.53 -45.17 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -5.87 Total: 8.22 kcal Atomic # 6 Polarization: 11.82 SS G_CDS: -3.40 Total: 8.43 kcal Atomic # 7 Polarization: -62.59 SS G_CDS: 0.05 Total: -62.54 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: 0.16 Total: -21.47 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.64 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.64 -8.53 -45.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753094203.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.947 kcal (2) G-P(sol) polarization free energy of solvation -36.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds