Wall clock time and date at job start Tue Mar 31 2020 12:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.46781 * 2 1 4 4 N 1.46500 * 109.47217 * 119.99969 * 2 1 3 5 5 C 1.36944 * 119.99770 * 274.72420 * 4 2 1 6 6 H 1.07998 * 120.00187 * 0.27727 * 5 4 2 7 7 C 1.38812 * 119.99691 * 180.27627 * 5 4 2 8 8 N 1.31624 * 120.00199 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00027 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.46926 * 59.99932 * 9 7 5 11 11 H 1.48499 * 109.47096 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47016 * 300.00235 * 9 7 5 13 13 C 1.52999 * 109.47024 * 240.00238 * 2 1 3 14 14 C 1.53046 * 109.45833 * 180.02562 * 13 2 1 15 15 C 1.53191 * 109.31266 * 178.61349 * 14 13 2 16 16 N 1.46927 * 108.77612 * 54.63683 * 15 14 13 17 17 C 1.34765 * 120.62950 * 126.36876 * 16 15 14 18 18 O 1.21596 * 120.00013 * 176.08064 * 17 16 15 19 19 C 1.47535 * 120.00306 * 356.08360 * 17 16 15 20 20 C 1.39802 * 120.97920 * 53.11980 * 19 17 16 21 21 N 1.32187 * 118.97963 * 179.97438 * 20 19 17 22 22 C 1.31936 * 121.14144 * 359.97438 * 21 20 19 23 23 N 1.31727 * 122.19344 * 359.97438 * 22 21 20 24 24 C 1.32768 * 120.87580 * 359.73481 * 23 22 21 25 25 O 1.35284 * 120.61706 * 180.26287 * 24 23 22 26 26 C 1.46926 * 118.73736 * 306.39393 * 16 15 14 27 27 C 1.53037 * 109.46116 * 59.99733 * 13 2 1 28 28 H 1.08996 * 109.46841 * 299.99538 * 1 2 3 29 29 H 1.08992 * 109.47308 * 59.99805 * 1 2 3 30 30 H 1.09003 * 109.46781 * 179.97438 * 1 2 3 31 31 H 0.97000 * 120.00058 * 95.00790 * 4 2 1 32 32 H 0.97001 * 120.00006 * 180.02562 * 8 7 5 33 33 H 1.08999 * 109.45896 * 300.02039 * 13 2 1 34 34 H 1.08998 * 109.49795 * 298.56818 * 14 13 2 35 35 H 1.09000 * 109.49648 * 58.66243 * 14 13 2 36 36 H 1.09006 * 109.58640 * 294.85220 * 15 14 13 37 37 H 1.08994 * 109.70431 * 174.49390 * 15 14 13 38 38 H 1.08003 * 120.51064 * 359.95323 * 20 19 17 39 39 H 1.07997 * 118.90410 * 179.97438 * 22 21 20 40 40 H 0.96701 * 113.99402 * 270.25837 * 25 24 23 41 41 H 1.09003 * 109.58809 * 293.82264 * 26 16 15 42 42 H 1.08994 * 109.70648 * 173.46542 * 26 16 15 43 43 H 1.08999 * 109.49736 * 301.33631 * 27 13 2 44 44 H 1.09008 * 109.49909 * 61.40309 * 27 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1545 -0.0060 2.3744 6 1 1.8977 1.0419 2.4229 7 6 2.6227 -0.6590 3.5063 8 7 2.9363 -1.9360 3.4471 9 14 2.8078 0.2746 5.1137 10 1 1.4869 0.8110 5.5294 11 1 3.3226 -0.6424 6.1622 12 1 3.7615 1.3974 4.9270 13 6 2.0400 -0.7212 -1.2493 14 6 3.5705 -0.7216 -1.2487 15 6 4.0774 -1.4744 -2.4828 16 7 3.4746 -0.8767 -3.6820 17 6 4.2480 -0.4571 -4.7028 18 8 3.7345 -0.0300 -5.7189 19 6 5.7177 -0.5160 -4.5875 20 6 6.3650 -1.7049 -4.2385 21 7 7.6837 -1.7131 -4.1470 22 6 8.3906 -0.6236 -4.3794 23 7 7.8282 0.5201 -4.7122 24 6 6.5099 0.6214 -4.8335 25 8 5.9383 1.7973 -5.1807 26 6 2.0128 -0.7447 -3.7469 27 6 1.5297 0.0004 -2.4986 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 2.2492 -1.6317 1.1526 32 1 3.2631 -2.3923 4.2382 33 1 1.6763 -1.7487 -1.2493 34 1 3.9346 0.3055 -1.2740 35 1 3.9338 -1.2147 -0.3470 36 1 3.7906 -2.5238 -2.4140 37 1 5.1629 -1.3953 -2.5413 38 1 5.7965 -2.6028 -4.0461 39 1 9.4661 -0.6710 -4.2939 40 1 5.7142 2.3627 -4.4289 41 1 1.5576 -1.7346 -3.7812 42 1 1.7337 -0.1832 -4.6384 43 1 0.4400 0.0214 -2.4870 44 1 1.9132 1.0207 -2.5116 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753273312.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:30 Heat of formation + Delta-G solvation = -9.103704 kcal Electronic energy + Delta-G solvation = -27481.071757 eV Core-core repulsion = 23627.479538 eV Total energy + Delta-G solvation = -3853.592219 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.77732 -40.01306 -38.20873 -37.79171 -35.53559 -33.92089 -33.05706 -32.20418 -30.97873 -30.68746 -28.34847 -26.19911 -25.01872 -24.69282 -23.72573 -22.86280 -21.48075 -19.99216 -19.64757 -19.35338 -18.45168 -17.65876 -17.04997 -16.91470 -16.27012 -15.30666 -15.23214 -14.96146 -14.38851 -14.33947 -14.23168 -14.03558 -13.89351 -13.68868 -13.47466 -12.80945 -12.68069 -12.62917 -12.40846 -12.14677 -11.70676 -11.58755 -11.27256 -11.11820 -11.00748 -10.89193 -10.78823 -10.37303 -10.34770 -10.26114 -10.15512 -9.90654 -9.80444 -9.70856 -9.63123 -8.95848 -8.75271 -7.00324 -5.81747 -3.09907 0.12918 0.50005 2.32036 2.69997 2.91678 3.27861 3.39631 3.44994 3.45308 3.66943 3.89822 4.09230 4.50101 4.53544 4.72820 4.78698 4.95372 4.97597 5.04823 5.09989 5.26387 5.36997 5.47749 5.57297 5.67607 5.70917 5.82376 5.84105 5.90997 6.02829 6.10450 6.23271 6.28852 6.37176 6.40284 6.44862 6.57845 6.69083 6.87426 6.95891 7.06457 7.15278 7.55578 7.65303 7.87675 8.37248 9.48563 10.06034 10.40783 11.40759 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014146 B = 0.003452 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.828539 B = 8109.324225 C = 9207.152969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.178 3.822 3 H 0.044 0.956 4 N -0.723 5.723 5 C -0.238 4.238 6 H 0.068 0.932 7 C -0.012 4.012 8 N -0.933 5.933 9 Si 0.904 3.096 10 H -0.287 1.287 11 H -0.291 1.291 12 H -0.287 1.287 13 C -0.090 4.090 14 C -0.121 4.121 15 C 0.097 3.903 16 N -0.598 5.598 17 C 0.569 3.431 18 O -0.522 6.522 19 C -0.248 4.248 20 C 0.197 3.803 21 N -0.524 5.524 22 C 0.335 3.665 23 N -0.539 5.539 24 C 0.408 3.592 25 O -0.462 6.462 26 C 0.114 3.886 27 C -0.128 4.128 28 H 0.051 0.949 29 H 0.038 0.962 30 H 0.045 0.955 31 H 0.383 0.617 32 H 0.255 0.745 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.094 0.906 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.179 0.821 39 H 0.207 0.793 40 H 0.412 0.588 41 H 0.070 0.930 42 H 0.091 0.909 43 H 0.081 0.919 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.978 1.052 -16.108 16.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.068 3.932 3 H 0.062 0.938 4 N -0.364 5.364 5 C -0.369 4.369 6 H 0.086 0.914 7 C -0.208 4.208 8 N -0.582 5.582 9 Si 0.735 3.265 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.214 1.214 13 C -0.110 4.110 14 C -0.160 4.160 15 C -0.025 4.025 16 N -0.332 5.332 17 C 0.355 3.645 18 O -0.398 6.398 19 C -0.258 4.258 20 C 0.030 3.970 21 N -0.239 5.239 22 C 0.048 3.952 23 N -0.264 5.264 24 C 0.220 3.780 25 O -0.270 6.270 26 C -0.008 4.008 27 C -0.167 4.167 28 H 0.070 0.930 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.217 0.783 32 H 0.065 0.935 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.113 0.887 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.196 0.804 39 H 0.224 0.776 40 H 0.273 0.727 41 H 0.089 0.911 42 H 0.109 0.891 43 H 0.099 0.901 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.694 1.228 -16.993 17.964 hybrid contribution -0.749 0.441 1.471 1.708 sum 4.946 1.669 -15.522 16.376 Atomic orbital electron populations 1.22494 0.99459 1.00797 0.99890 1.20208 0.91667 0.95265 0.86030 0.93792 1.42400 1.78121 1.10533 1.05356 1.19173 1.36343 0.93791 0.87569 0.91414 1.24695 1.02207 0.95937 0.97938 1.69636 1.50864 1.08648 1.29044 0.86321 0.77775 0.78644 0.83759 1.21336 1.21707 1.21364 1.21396 0.94710 1.00108 0.94750 1.21884 0.96259 1.00797 0.97015 1.22136 0.97868 0.97891 0.84619 1.48113 1.07440 1.60317 1.17283 1.17631 0.85097 0.78301 0.83507 1.90829 1.74129 1.45905 1.28938 1.21921 0.96796 0.97856 1.09177 1.23529 0.90293 0.96341 0.86790 1.68464 1.07365 1.30777 1.17267 1.25074 1.01382 0.81547 0.87187 1.68113 1.11725 1.30016 1.16496 1.19357 0.86617 0.86451 0.85604 1.84697 1.78711 1.27768 1.35800 1.21706 0.78099 1.01221 0.99770 1.22032 1.01404 0.99572 0.93673 0.93004 0.94288 0.93554 0.78341 0.93494 0.91185 0.92101 0.88719 0.90445 0.90471 0.80385 0.77636 0.72699 0.91139 0.89088 0.90094 0.91658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.77 9.14 37.16 0.34 -2.43 16 2 C 0.18 3.17 2.47 -67.93 -0.17 3.00 16 3 H 0.04 0.83 8.08 -51.93 -0.42 0.41 16 4 N -0.72 -16.54 4.41 -53.42 -0.24 -16.78 16 5 C -0.24 -6.23 9.93 -15.06 -0.15 -6.38 16 6 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 7 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 8 N -0.93 -26.88 13.06 55.49 0.72 -26.16 16 9 Si 0.90 21.70 29.55 -169.99 -5.02 16.67 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 13 C -0.09 -1.25 1.79 -90.58 -0.16 -1.41 16 14 C -0.12 -1.65 5.22 -26.61 -0.14 -1.79 16 15 C 0.10 1.04 5.54 -3.71 -0.02 1.02 16 16 N -0.60 -6.75 2.97 -174.00 -0.52 -7.27 16 17 C 0.57 7.26 6.96 -12.47 -0.09 7.17 16 18 O -0.52 -8.39 16.23 4.05 0.07 -8.32 16 19 C -0.25 -2.83 4.94 -104.56 -0.52 -3.34 16 20 C 0.20 1.92 8.72 -16.81 -0.15 1.78 16 21 N -0.52 -5.25 10.42 -14.29 -0.15 -5.40 16 22 C 0.33 3.09 12.27 -92.09 -1.13 1.96 16 23 N -0.54 -6.02 10.45 -14.32 -0.15 -6.17 16 24 C 0.41 4.79 7.84 -16.19 -0.13 4.67 16 25 O -0.46 -5.17 12.88 -18.78 -0.24 -5.42 16 26 C 0.11 1.24 6.42 -3.71 -0.02 1.22 16 27 C -0.13 -1.48 5.04 -26.61 -0.13 -1.61 16 28 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.04 0.53 6.40 -51.93 -0.33 0.20 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.38 9.31 7.58 -40.82 -0.31 9.00 16 32 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.09 1.55 7.41 -51.93 -0.38 1.17 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.08 0.76 4.68 -51.93 -0.24 0.52 16 38 H 0.18 1.33 7.35 -52.48 -0.39 0.94 16 39 H 0.21 1.11 8.06 -52.49 -0.42 0.69 16 40 H 0.41 2.70 9.06 45.56 0.41 3.11 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.09 1.05 7.03 -51.93 -0.37 0.69 16 43 H 0.08 0.87 6.36 -51.93 -0.33 0.54 16 44 H 0.06 0.79 8.14 -51.92 -0.42 0.36 16 LS Contribution 358.21 15.07 5.40 5.40 Total: -1.00 -33.22 358.21 -7.97 -41.20 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -5.29 Total: 8.82 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: -2.56 Total: 3.43 kcal Atomic # 7 Polarization: -61.45 SS G_CDS: -0.33 Total: -61.78 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: -0.18 Total: -13.74 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.22 -7.97 -41.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753273312.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.093 kcal (2) G-P(sol) polarization free energy of solvation -33.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds