Wall clock time and date at job start Tue Mar 31 2020 12:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.46806 * 2 1 4 4 C 1.52998 * 109.46933 * 119.99812 * 2 1 3 5 5 N 1.46499 * 109.46916 * 175.00021 * 4 2 1 6 6 C 1.36937 * 120.00269 * 180.02562 * 5 4 2 7 7 H 1.08008 * 119.99981 * 359.97438 * 6 5 4 8 8 C 1.38813 * 120.00399 * 180.02562 * 6 5 4 9 9 N 1.31614 * 120.00213 * 179.97438 * 8 6 5 10 10 Si 1.86804 * 119.99836 * 359.97438 * 8 6 5 11 11 H 1.48497 * 109.46838 * 90.00044 * 10 8 6 12 12 H 1.48502 * 109.47034 * 210.00324 * 10 8 6 13 13 H 1.48498 * 109.47165 * 330.00013 * 10 8 6 14 14 N 1.46505 * 109.47087 * 239.99852 * 2 1 3 15 15 C 1.46500 * 120.00012 * 299.99792 * 14 2 1 16 16 C 1.34772 * 119.99579 * 119.99903 * 14 2 1 17 17 O 1.21547 * 120.00369 * 354.80903 * 16 14 2 18 18 C 1.47863 * 119.99738 * 174.80871 * 16 14 2 19 19 C 1.39615 * 120.11185 * 335.30484 * 18 16 14 20 20 C 1.37979 * 119.99852 * 179.97438 * 19 18 16 21 21 C 1.38263 * 120.21536 * 359.72975 * 20 19 18 22 22 C 1.38933 * 120.22652 * 0.54796 * 21 20 19 23 23 N 1.39973 * 119.99836 * 179.72194 * 22 21 20 24 24 C 1.34780 * 120.00131 * 215.09228 * 23 22 21 25 25 N 1.34779 * 120.00188 * 175.27922 * 24 23 22 26 26 O 1.21586 * 119.99943 * 355.28391 * 24 23 22 27 27 C 1.38632 * 120.00110 * 359.45196 * 22 21 20 28 28 H 1.09005 * 109.46967 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47237 * 299.99973 * 1 2 3 30 30 H 1.09000 * 109.47249 * 60.00665 * 1 2 3 31 31 H 1.08996 * 109.47457 * 294.99971 * 4 2 1 32 32 H 1.08999 * 109.47373 * 55.00823 * 4 2 1 33 33 H 0.96996 * 120.00479 * 0.02562 * 5 4 2 34 34 H 0.97001 * 120.00340 * 179.97438 * 9 8 6 35 35 H 1.08996 * 109.47077 * 275.91066 * 15 14 2 36 36 H 1.08999 * 109.47023 * 35.91491 * 15 14 2 37 37 H 1.09000 * 109.46917 * 155.91446 * 15 14 2 38 38 H 1.08003 * 119.99933 * 0.02562 * 19 18 16 39 39 H 1.07994 * 119.89163 * 180.02562 * 20 19 18 40 40 H 1.08007 * 119.88431 * 180.27287 * 21 20 19 41 41 H 0.96996 * 120.00110 * 35.09711 * 23 22 21 42 42 H 0.96992 * 120.00256 * 180.02562 * 25 24 23 43 43 H 0.97001 * 119.99483 * 359.72643 * 25 24 23 44 44 H 1.08005 * 120.11135 * 180.24609 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1906 6 6 4.1838 -1.4388 2.2067 7 1 3.6468 -1.8439 3.0517 8 6 5.5673 -1.5379 2.1514 9 7 6.2245 -2.1261 3.1283 10 14 6.4963 -0.8365 0.6904 11 1 6.8569 0.5775 0.9657 12 1 7.7324 -1.6276 0.4637 13 1 5.6379 -0.9019 -0.5196 14 7 2.0184 -0.6907 -1.1962 15 6 1.6645 -2.0933 -1.4280 16 6 2.7932 -0.0356 -2.0833 17 8 3.0093 1.1520 -1.9410 18 6 3.3804 -0.7618 -3.2297 19 6 3.5896 -2.1400 -3.1530 20 6 4.1372 -2.8154 -4.2243 21 6 4.4753 -2.1326 -5.3781 22 6 4.2764 -0.7601 -5.4623 23 7 4.6257 -0.0727 -6.6305 24 6 5.1141 1.1811 -6.5541 25 7 5.5394 1.8078 -7.6690 26 8 5.1712 1.7469 -5.4794 27 6 3.7267 -0.0724 -4.3914 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 1.7516 -0.1583 2.1370 32 1 1.6055 -1.7198 1.2952 33 1 3.9824 -0.4622 0.4320 34 1 7.1913 -2.1957 3.0895 35 1 2.3559 -2.7370 -0.8843 36 1 0.6481 -2.2741 -1.0782 37 1 1.7263 -2.3121 -2.4940 38 1 3.3220 -2.6777 -2.2553 39 1 4.2979 -3.8815 -4.1632 40 1 4.8995 -2.6673 -6.2151 41 1 4.5162 -0.4987 -7.4950 42 1 5.8912 2.7100 -7.6140 43 1 5.4976 1.3549 -8.5258 44 1 3.5677 0.9939 -4.4564 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753724283.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:22 Heat of formation + Delta-G solvation = 7.471654 kcal Electronic energy + Delta-G solvation = -27643.055394 eV Core-core repulsion = 23790.181936 eV Total energy + Delta-G solvation = -3852.873458 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.92579 -40.02572 -38.26335 -36.43086 -35.05988 -34.20175 -33.84338 -32.18393 -30.97312 -30.41825 -29.24069 -26.93200 -25.88306 -24.18388 -23.27899 -22.08963 -21.22478 -20.96582 -19.36129 -18.61567 -18.19278 -17.48813 -16.86506 -16.64350 -15.99451 -15.61462 -15.32295 -15.19236 -14.78384 -14.54060 -14.19584 -14.00310 -13.77076 -13.48947 -13.23810 -12.85986 -12.61646 -12.48907 -12.42915 -12.32741 -12.01563 -11.77811 -11.69529 -11.16463 -10.86391 -10.74838 -10.62222 -10.46313 -10.25878 -10.03245 -10.01376 -9.57827 -9.52313 -8.96329 -8.82760 -8.32633 -8.24737 -7.15599 -5.70893 -3.05344 0.89075 1.30167 2.43261 2.78613 3.08454 3.23297 3.48845 3.54621 3.61219 3.85044 4.05331 4.59688 4.68600 4.83854 4.97104 5.03917 5.18429 5.31375 5.34984 5.38128 5.42098 5.52924 5.61050 5.67477 5.79128 5.86377 5.89671 6.00505 6.02269 6.08613 6.22231 6.29245 6.30583 6.37407 6.43969 6.47066 6.53531 6.68443 6.86992 6.95759 7.50625 7.63956 8.05278 8.24607 8.44832 8.48952 9.28606 10.01976 10.22223 11.47247 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012319 B = 0.004426 C = 0.003889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.367792 B = 6324.930679 C = 7198.538269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.122 3.878 3 H 0.101 0.899 4 C 0.149 3.851 5 N -0.753 5.753 6 C -0.242 4.242 7 H 0.090 0.910 8 C 0.008 3.992 9 N -0.934 5.934 10 Si 0.878 3.122 11 H -0.284 1.284 12 H -0.291 1.291 13 H -0.276 1.276 14 N -0.594 5.594 15 C 0.064 3.936 16 C 0.557 3.443 17 O -0.532 6.532 18 C -0.110 4.110 19 C -0.112 4.112 20 C -0.110 4.110 21 C -0.125 4.125 22 C 0.145 3.855 23 N -0.684 5.684 24 C 0.699 3.301 25 N -0.863 5.863 26 O -0.563 6.563 27 C -0.064 4.064 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.056 0.944 31 H 0.038 0.962 32 H 0.029 0.971 33 H 0.363 0.637 34 H 0.259 0.741 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.152 0.848 39 H 0.134 0.866 40 H 0.127 0.873 41 H 0.406 0.594 42 H 0.419 0.581 43 H 0.397 0.603 44 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.338 -0.841 -25.550 27.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.019 3.981 3 H 0.119 0.881 4 C 0.021 3.979 5 N -0.399 5.399 6 C -0.372 4.372 7 H 0.108 0.892 8 C -0.187 4.187 9 N -0.583 5.583 10 Si 0.708 3.292 11 H -0.210 1.210 12 H -0.218 1.218 13 H -0.202 1.202 14 N -0.326 5.326 15 C -0.079 4.079 16 C 0.346 3.654 17 O -0.410 6.410 18 C -0.113 4.113 19 C -0.131 4.131 20 C -0.129 4.129 21 C -0.146 4.146 22 C 0.050 3.950 23 N -0.334 5.334 24 C 0.398 3.602 25 N -0.432 5.432 26 O -0.438 6.438 27 C -0.085 4.085 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.055 0.945 32 H 0.047 0.953 33 H 0.196 0.804 34 H 0.069 0.931 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.100 0.900 38 H 0.169 0.831 39 H 0.152 0.848 40 H 0.145 0.855 41 H 0.241 0.759 42 H 0.251 0.749 43 H 0.225 0.775 44 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -9.175 0.078 -24.286 25.961 hybrid contribution 1.087 0.277 -1.848 2.162 sum -8.088 0.354 -26.133 27.359 Atomic orbital electron populations 1.22039 0.94780 1.02199 1.02262 1.21490 0.93793 0.98534 0.84315 0.88076 1.20985 0.85738 0.97420 0.93780 1.42672 1.01308 1.71321 1.24557 1.19036 0.89820 1.29368 0.98987 0.89201 1.24601 0.96137 1.00519 0.97470 1.69699 1.07263 1.48738 1.32558 0.86652 0.79831 0.79120 0.83598 1.21029 1.21765 1.20180 1.47587 1.50249 1.12400 1.22370 1.22379 1.01306 0.82244 1.01968 1.18274 0.78376 0.86587 0.82190 1.90777 1.60063 1.14929 1.75218 1.19842 1.02803 0.93865 0.94836 1.22196 0.97368 0.93486 1.00065 1.20916 0.99068 1.00303 0.92595 1.21004 1.01747 0.92546 0.99301 1.17286 0.99390 0.90986 0.87304 1.42442 1.67457 1.15002 1.08452 1.16024 0.78196 0.81179 0.84810 1.42951 1.70805 1.20698 1.08706 1.91100 1.60422 1.65414 1.26835 1.21356 0.94433 1.01511 0.91202 0.92177 0.91180 0.92524 0.94472 0.95275 0.80373 0.93134 0.91074 0.91244 0.90000 0.83097 0.84838 0.85503 0.75855 0.74871 0.77541 0.83183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.16 37.16 0.34 -1.62 16 2 C 0.12 2.08 2.80 -67.93 -0.19 1.89 16 3 H 0.10 1.97 6.91 -51.93 -0.36 1.61 16 4 C 0.15 2.96 5.56 -4.04 -0.02 2.94 16 5 N -0.75 -19.02 5.24 -59.91 -0.31 -19.33 16 6 C -0.24 -7.11 10.47 -15.06 -0.16 -7.27 16 7 H 0.09 2.77 8.06 -52.48 -0.42 2.35 16 8 C 0.01 0.26 5.50 -17.43 -0.10 0.17 16 9 N -0.93 -30.28 13.97 55.49 0.78 -29.50 16 10 Si 0.88 24.37 27.74 -169.99 -4.71 19.66 16 11 H -0.28 -8.06 7.11 56.52 0.40 -7.66 16 12 H -0.29 -8.00 7.11 56.52 0.40 -7.60 16 13 H -0.28 -7.52 6.52 56.52 0.37 -7.15 16 14 N -0.59 -10.05 2.24 -175.04 -0.39 -10.44 16 15 C 0.06 0.83 7.88 59.85 0.47 1.30 16 16 C 0.56 10.88 7.20 -12.32 -0.09 10.79 16 17 O -0.53 -12.35 15.94 5.32 0.08 -12.26 16 18 C -0.11 -1.87 5.49 -104.99 -0.58 -2.44 16 19 C -0.11 -1.59 7.53 -39.16 -0.29 -1.89 16 20 C -0.11 -1.25 10.02 -39.67 -0.40 -1.64 16 21 C -0.13 -1.31 9.96 -39.31 -0.39 -1.70 16 22 C 0.14 1.83 6.29 -83.74 -0.53 1.30 16 23 N -0.68 -6.42 5.34 -14.26 -0.08 -6.49 16 24 C 0.70 8.12 8.68 -86.91 -0.75 7.36 16 25 N -0.86 -5.35 8.88 27.64 0.25 -5.11 16 26 O -0.56 -9.92 14.62 5.29 0.08 -9.85 16 27 C -0.06 -1.05 8.23 -38.98 -0.32 -1.37 16 28 H 0.06 0.67 6.70 -51.93 -0.35 0.32 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.03 0.56 7.84 -51.93 -0.41 0.15 16 33 H 0.36 9.55 4.93 -40.82 -0.20 9.35 16 34 H 0.26 8.02 8.31 -40.82 -0.34 7.68 16 35 H 0.07 1.02 7.14 -51.93 -0.37 0.65 16 36 H 0.07 0.75 6.46 -51.93 -0.34 0.41 16 37 H 0.08 0.90 5.11 -51.93 -0.27 0.64 16 38 H 0.15 2.07 4.44 -52.48 -0.23 1.83 16 39 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 40 H 0.13 0.89 8.06 -52.48 -0.42 0.46 16 41 H 0.41 1.96 8.84 -40.82 -0.36 1.60 16 42 H 0.42 2.35 8.93 -40.82 -0.36 1.99 16 43 H 0.40 0.91 8.85 -40.82 -0.36 0.55 16 44 H 0.15 2.83 6.02 -52.48 -0.32 2.51 16 LS Contribution 358.54 15.07 5.40 5.40 Total: -1.00 -41.18 358.54 -7.54 -48.72 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: -5.63 Total: 11.38 kcal Atomic # 6 Polarization: 10.82 SS G_CDS: -3.01 Total: 7.82 kcal Atomic # 7 Polarization: -71.11 SS G_CDS: 0.24 Total: -70.87 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: 0.16 Total: -22.11 kcal Atomic # 14 Polarization: 24.37 SS G_CDS: -4.71 Total: 19.66 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -41.18 -7.54 -48.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753724283.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.192 kcal (2) G-P(sol) polarization free energy of solvation -41.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds