Wall clock time and date at job start Tue Mar 31 2020 12:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47221 * 2 1 4 4 C 1.53000 * 109.47076 * 240.00106 * 2 1 3 5 5 N 1.46502 * 109.47607 * 184.99813 * 4 2 1 6 6 C 1.36926 * 120.00496 * 180.02562 * 5 4 2 7 7 H 1.08006 * 120.00161 * 359.97438 * 6 5 4 8 8 C 1.38814 * 120.00210 * 180.02562 * 6 5 4 9 9 N 1.31612 * 120.00158 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00165 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.46816 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47199 * 119.99463 * 10 8 6 13 13 H 1.48498 * 109.46932 * 239.99681 * 10 8 6 14 14 N 1.46505 * 109.47267 * 120.00512 * 2 1 3 15 15 C 1.46500 * 120.00012 * 59.99628 * 14 2 1 16 16 C 1.34772 * 119.99579 * 239.99739 * 14 2 1 17 17 O 1.21553 * 120.00578 * 354.81536 * 16 14 2 18 18 C 1.47863 * 119.99738 * 174.80871 * 16 14 2 19 19 C 1.39608 * 120.11282 * 335.34292 * 18 16 14 20 20 C 1.37979 * 119.99714 * 179.97438 * 19 18 16 21 21 C 1.38255 * 120.22022 * 359.72745 * 20 19 18 22 22 C 1.38941 * 120.22213 * 0.54257 * 21 20 19 23 23 N 1.39978 * 119.99666 * 179.72345 * 22 21 20 24 24 C 1.34778 * 120.00242 * 215.08906 * 23 22 21 25 25 N 1.34779 * 120.00184 * 175.27952 * 24 23 22 26 26 O 1.21585 * 119.99698 * 355.28431 * 24 23 22 27 27 C 1.38632 * 120.00408 * 359.45978 * 22 21 20 28 28 H 1.09002 * 109.47282 * 59.99707 * 1 2 3 29 29 H 1.09005 * 109.47257 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47034 * 299.99323 * 1 2 3 31 31 H 1.09005 * 109.47417 * 305.00286 * 4 2 1 32 32 H 1.09007 * 109.47229 * 64.99797 * 4 2 1 33 33 H 0.97006 * 119.99082 * 0.02562 * 5 4 2 34 34 H 0.96998 * 120.00713 * 180.02562 * 9 8 6 35 35 H 1.08996 * 109.47077 * 275.91066 * 15 14 2 36 36 H 1.08999 * 109.47023 * 35.91491 * 15 14 2 37 37 H 1.09000 * 109.46917 * 155.91446 * 15 14 2 38 38 H 1.08001 * 120.00410 * 359.95309 * 19 18 16 39 39 H 1.08007 * 119.89022 * 180.02562 * 20 19 18 40 40 H 1.08007 * 119.88970 * 180.27375 * 21 20 19 41 41 H 0.96997 * 119.99884 * 35.09608 * 23 22 21 42 42 H 0.96994 * 119.99581 * 180.02562 * 25 24 23 43 43 H 0.96993 * 119.99527 * 359.73126 * 25 24 23 44 44 H 1.07996 * 120.10964 * 180.29385 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5000 -0.8264 -1.1907 6 6 4.1838 -1.4378 -2.2073 7 1 3.6467 -1.8431 -3.0522 8 6 5.5672 -1.5379 -2.1515 9 7 6.2217 -1.0446 -1.1218 10 14 6.5001 -2.3715 -3.5388 11 1 5.5397 -2.8371 -4.5713 12 1 7.4510 -1.4060 -4.1460 13 1 7.2510 -3.5345 -3.0015 14 7 2.0184 -0.6907 1.1961 15 6 1.6644 -2.0933 1.4279 16 6 2.7932 -0.0358 2.0832 17 8 3.1648 1.0970 1.8458 18 6 3.1913 -0.6951 3.3454 19 6 2.4097 -1.7234 3.8753 20 6 2.7837 -2.3373 5.0530 21 6 3.9345 -1.9416 5.7092 22 6 4.7161 -0.9155 5.1930 23 7 5.8772 -0.5147 5.8642 24 6 6.2426 0.7826 5.8632 25 7 7.3062 1.1838 6.5873 26 8 5.6125 1.5910 5.2090 27 6 4.3491 -0.2922 4.0103 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.6053 -1.7198 -1.2953 32 1 1.7516 -0.1583 -2.1370 33 1 3.9823 -0.4628 -0.4317 34 1 7.1884 -1.1142 -1.0829 35 1 0.6866 -2.1470 1.9064 36 1 1.6323 -2.6221 0.4753 37 1 2.4111 -2.5544 2.0744 38 1 1.5122 -2.0381 3.3636 39 1 2.1779 -3.1330 5.4612 40 1 4.2245 -2.4289 6.6284 41 1 6.4190 -1.1707 6.3301 42 1 7.5688 2.1175 6.5867 43 1 7.8063 0.5396 7.1122 44 1 4.9580 0.5024 3.6051 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753724284.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:25 Heat of formation + Delta-G solvation = 4.465516 kcal Electronic energy + Delta-G solvation = -27455.238113 eV Core-core repulsion = 23602.234299 eV Total energy + Delta-G solvation = -3853.003814 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.75830 -39.83281 -38.10531 -36.20971 -34.90191 -34.03066 -33.67657 -32.07553 -30.75113 -30.01044 -29.11487 -26.74823 -25.58171 -24.03201 -23.13564 -22.45777 -21.07835 -20.81446 -19.11335 -18.45563 -18.02765 -16.99389 -16.69568 -16.49140 -15.85234 -15.44508 -15.15313 -15.08348 -14.66689 -14.52936 -14.06806 -13.67537 -13.49300 -13.33000 -13.22707 -13.03536 -12.52396 -12.28291 -12.22164 -12.13713 -11.96837 -11.57194 -11.37859 -11.01807 -10.80652 -10.68924 -10.46890 -10.37059 -10.09934 -9.95368 -9.86477 -9.62151 -9.36009 -8.80833 -8.79611 -8.15117 -8.09816 -6.80954 -5.64622 -2.94189 1.03701 1.44481 2.60336 2.95418 3.28642 3.38860 3.47973 3.52902 3.55703 4.05069 4.22976 4.65440 4.75435 4.89503 5.09905 5.15858 5.33960 5.47105 5.48669 5.52971 5.56790 5.64363 5.68515 5.72869 5.90852 6.02280 6.14465 6.16432 6.18944 6.27422 6.32868 6.41553 6.46802 6.51993 6.59688 6.63937 6.70062 6.82063 7.02589 7.13461 7.67251 7.77464 7.84927 8.41209 8.52222 8.68345 9.63711 10.24034 10.59466 11.57260 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010362 B = 0.004299 C = 0.003504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2701.520317 B = 6512.089729 C = 7988.982718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.125 3.875 3 H 0.100 0.900 4 C 0.144 3.856 5 N -0.728 5.728 6 C -0.240 4.240 7 H 0.069 0.931 8 C -0.013 4.013 9 N -0.927 5.927 10 Si 0.904 3.096 11 H -0.281 1.281 12 H -0.292 1.292 13 H -0.293 1.293 14 N -0.591 5.591 15 C 0.069 3.931 16 C 0.559 3.441 17 O -0.526 6.526 18 C -0.103 4.103 19 C -0.119 4.119 20 C -0.114 4.114 21 C -0.128 4.128 22 C 0.148 3.852 23 N -0.684 5.684 24 C 0.701 3.299 25 N -0.863 5.863 26 O -0.563 6.563 27 C -0.055 4.055 28 H 0.067 0.933 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.020 0.980 32 H 0.028 0.972 33 H 0.388 0.612 34 H 0.253 0.747 35 H 0.052 0.948 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.146 0.854 39 H 0.130 0.870 40 H 0.125 0.875 41 H 0.406 0.594 42 H 0.418 0.582 43 H 0.397 0.603 44 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.082 -3.944 19.300 20.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.022 3.978 3 H 0.119 0.881 4 C 0.015 3.985 5 N -0.373 5.373 6 C -0.371 4.371 7 H 0.087 0.913 8 C -0.209 4.209 9 N -0.575 5.575 10 Si 0.736 3.264 11 H -0.206 1.206 12 H -0.219 1.219 13 H -0.220 1.220 14 N -0.324 5.324 15 C -0.073 4.073 16 C 0.347 3.653 17 O -0.402 6.402 18 C -0.107 4.107 19 C -0.138 4.138 20 C -0.133 4.133 21 C -0.149 4.149 22 C 0.054 3.946 23 N -0.333 5.333 24 C 0.399 3.601 25 N -0.432 5.432 26 O -0.438 6.438 27 C -0.076 4.076 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.038 0.962 32 H 0.045 0.955 33 H 0.222 0.778 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.094 0.906 37 H 0.102 0.898 38 H 0.164 0.836 39 H 0.148 0.852 40 H 0.143 0.857 41 H 0.242 0.758 42 H 0.251 0.749 43 H 0.224 0.776 44 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -6.443 -2.798 18.418 19.712 hybrid contribution 1.555 -0.787 0.002 1.743 sum -4.888 -3.585 18.420 19.392 Atomic orbital electron populations 1.22051 0.95137 1.02024 1.02045 1.21399 0.93175 0.98606 0.84591 0.88150 1.20993 0.87176 0.96682 0.93617 1.42335 0.99696 1.70080 1.25158 1.19248 0.89441 1.29308 0.99092 0.91282 1.24751 0.96463 1.01761 0.97968 1.69713 1.06960 1.50737 1.30084 0.86157 0.79990 0.78717 0.81567 1.20619 1.21945 1.22028 1.47487 1.50624 1.11953 1.22313 1.22269 0.99379 0.82509 1.03182 1.18221 0.78027 0.85854 0.83153 1.90798 1.53539 1.18775 1.77115 1.19836 0.96927 0.97810 0.96095 1.22042 1.00790 0.94871 0.96081 1.20821 0.96565 1.00570 0.95342 1.20954 0.95053 0.98739 1.00166 1.17313 0.87842 0.97326 0.92131 1.42440 1.26470 1.07834 1.56556 1.15998 0.81279 0.82394 0.80394 1.42936 1.32936 1.14251 1.53039 1.91083 1.55092 1.52379 1.45275 1.21439 0.96043 0.98822 0.91331 0.91411 0.92400 0.92638 0.96212 0.95482 0.77776 0.93706 0.92979 0.90606 0.89758 0.83632 0.85230 0.85703 0.75847 0.74921 0.77572 0.82920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.19 37.16 0.34 -1.74 16 2 C 0.13 2.29 2.80 -67.93 -0.19 2.10 16 3 H 0.10 2.11 6.91 -51.93 -0.36 1.75 16 4 C 0.14 3.04 5.48 -4.04 -0.02 3.02 16 5 N -0.73 -19.70 5.43 -59.90 -0.33 -20.03 16 6 C -0.24 -7.00 9.99 -15.06 -0.15 -7.15 16 7 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 8 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 9 N -0.93 -29.68 13.06 55.49 0.72 -28.96 16 10 Si 0.90 23.18 29.55 -169.99 -5.02 18.16 16 11 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 13 H -0.29 -7.49 7.11 56.52 0.40 -7.08 16 14 N -0.59 -10.66 2.24 -175.04 -0.39 -11.05 16 15 C 0.07 0.98 7.78 59.85 0.47 1.45 16 16 C 0.56 11.55 7.19 -12.32 -0.09 11.46 16 17 O -0.53 -13.06 15.94 5.32 0.08 -12.97 16 18 C -0.10 -1.82 5.49 -104.99 -0.58 -2.39 16 19 C -0.12 -1.56 7.52 -39.17 -0.29 -1.86 16 20 C -0.11 -1.22 10.02 -39.67 -0.40 -1.62 16 21 C -0.13 -1.39 9.96 -39.31 -0.39 -1.78 16 22 C 0.15 2.07 6.29 -83.73 -0.53 1.55 16 23 N -0.68 -7.59 5.34 -14.25 -0.08 -7.67 16 24 C 0.70 9.20 8.68 -86.91 -0.75 8.45 16 25 N -0.86 -6.66 8.88 27.63 0.25 -6.41 16 26 O -0.56 -10.60 14.62 5.29 0.08 -10.52 16 27 C -0.06 -1.02 8.23 -38.98 -0.32 -1.34 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.69 7.67 -51.93 -0.40 0.29 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.02 0.40 6.93 -51.93 -0.36 0.04 16 32 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.39 11.52 7.06 -40.82 -0.29 11.23 16 34 H 0.25 7.81 8.31 -40.82 -0.34 7.47 16 35 H 0.05 0.55 7.14 -51.93 -0.37 0.18 16 36 H 0.08 1.14 6.57 -51.93 -0.34 0.80 16 37 H 0.08 1.18 5.11 -51.93 -0.27 0.92 16 38 H 0.15 1.59 4.44 -52.49 -0.23 1.36 16 39 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 40 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 41 H 0.41 2.74 8.84 -40.82 -0.36 2.38 16 42 H 0.42 2.92 8.93 -40.82 -0.36 2.56 16 43 H 0.40 1.53 8.85 -40.82 -0.36 1.17 16 44 H 0.15 3.37 6.02 -52.49 -0.32 3.06 16 LS Contribution 361.69 15.07 5.45 5.45 Total: -1.00 -40.58 361.69 -7.92 -48.49 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: -5.68 Total: 15.86 kcal Atomic # 6 Polarization: 12.65 SS G_CDS: -3.00 Total: 9.65 kcal Atomic # 7 Polarization: -74.29 SS G_CDS: 0.18 Total: -74.11 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: 0.16 Total: -23.50 kcal Atomic # 14 Polarization: 23.18 SS G_CDS: -5.02 Total: 18.16 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -40.58 -7.92 -48.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753724284.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.958 kcal (2) G-P(sol) polarization free energy of solvation -40.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds