Wall clock time and date at job start Tue Mar 31 2020 12:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21277 * 119.99644 * 2 1 4 4 N 1.34775 * 120.00073 * 180.02562 * 2 1 3 5 5 C 1.39427 * 119.99662 * 185.09285 * 4 2 1 6 6 C 1.39017 * 119.63210 * 174.89480 * 5 4 2 7 7 C 1.39554 * 118.93430 * 180.24678 * 6 5 4 8 8 C 1.48163 * 120.88395 * 179.77666 * 7 6 5 9 9 O 1.21513 * 120.00369 * 359.72398 * 8 7 6 10 10 N 1.34784 * 119.99965 * 179.97438 * 8 7 6 11 11 C 1.46493 * 120.00108 * 179.72740 * 10 8 7 12 12 H 1.08997 * 109.47283 * 325.00051 * 11 10 8 13 13 C 1.53005 * 109.46925 * 85.00195 * 11 10 8 14 14 C 1.52995 * 109.47120 * 204.99774 * 11 10 8 15 15 C 1.53003 * 109.47115 * 64.99942 * 14 11 10 16 16 N 1.46497 * 109.47238 * 179.97438 * 15 14 11 17 17 C 1.36935 * 119.99890 * 180.02562 * 16 15 14 18 18 H 1.07995 * 120.00219 * 359.97438 * 17 16 15 19 19 C 1.38817 * 119.99887 * 180.02562 * 17 16 15 20 20 N 1.31628 * 119.99657 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 120.00231 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.46943 * 89.99842 * 21 19 17 23 23 H 1.48495 * 109.47232 * 210.00317 * 21 19 17 24 24 H 1.48503 * 109.47050 * 330.00119 * 21 19 17 25 25 C 1.39982 * 118.22670 * 359.50693 * 7 6 5 26 26 C 1.37998 * 119.15601 * 0.25199 * 25 7 6 27 27 N 1.31883 * 120.98925 * 359.97438 * 26 25 7 28 28 H 1.09000 * 109.46999 * 269.99565 * 1 2 3 29 29 H 1.08999 * 109.47347 * 29.99970 * 1 2 3 30 30 H 1.08997 * 109.47060 * 149.99821 * 1 2 3 31 31 H 0.96996 * 120.00034 * 5.08772 * 4 2 1 32 32 H 1.08000 * 120.53496 * 0.02562 * 6 5 4 33 33 H 0.97001 * 119.99309 * 359.72182 * 10 8 7 34 34 H 1.08994 * 109.47097 * 299.99650 * 13 11 10 35 35 H 1.08999 * 109.47373 * 60.00382 * 13 11 10 36 36 H 1.09008 * 109.46889 * 179.97438 * 13 11 10 37 37 H 1.09001 * 109.47296 * 185.00226 * 14 11 10 38 38 H 1.09003 * 109.47470 * 305.00544 * 14 11 10 39 39 H 1.09001 * 109.47271 * 300.00300 * 15 14 11 40 40 H 1.09007 * 109.46905 * 60.00093 * 15 14 11 41 41 H 0.97001 * 120.00601 * 0.02562 * 16 15 14 42 42 H 0.96999 * 119.99328 * 179.97438 * 20 19 17 43 43 H 1.07996 * 120.41796 * 180.26814 * 25 7 6 44 44 H 1.07995 * 119.50480 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5710 -1.1695 0.1067 6 6 4.2502 -2.3778 0.2127 7 6 5.6412 -2.3630 0.3244 8 6 6.4080 -3.6250 0.4447 9 8 5.8257 -4.6915 0.4520 10 7 7.7512 -3.5899 0.5512 11 6 8.5090 -4.8373 0.6762 12 1 7.9324 -5.5559 1.2586 13 6 8.7810 -5.4105 -0.7162 14 6 9.8378 -4.5584 1.3813 15 6 9.5677 -4.1033 2.8169 16 7 10.8401 -3.8369 3.4923 17 6 10.8485 -3.4150 4.7950 18 1 9.9172 -3.2783 5.3244 19 6 12.0541 -3.1619 5.4348 20 7 12.0622 -2.7559 6.6869 21 14 13.6651 -3.3976 4.5190 22 1 14.0415 -2.1291 3.8450 23 1 14.7294 -3.7821 5.4805 24 1 13.5049 -4.4692 3.5034 25 6 6.2930 -1.1242 0.3140 26 6 5.5436 0.0289 0.2000 27 7 4.2295 -0.0223 0.1008 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3633 -0.8899 -0.5138 31 1 1.6988 -2.0055 -0.0754 32 1 3.7098 -3.3129 0.2121 33 1 8.2160 -2.7385 0.5450 34 1 7.8343 -5.6092 -1.2185 35 1 9.3576 -4.6920 -1.2986 36 1 9.3452 -6.3385 -0.6232 37 1 10.4395 -5.4672 1.3953 38 1 10.3753 -3.7750 0.8470 39 1 8.9660 -3.1945 2.8029 40 1 9.0302 -4.8867 3.3513 41 1 11.6766 -3.9592 3.0168 42 1 12.9047 -2.5795 7.1340 43 1 7.3687 -1.0717 0.3940 44 1 6.0406 0.9877 0.1918 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754009041.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:27 Heat of formation + Delta-G solvation = -12.455749 kcal Electronic energy + Delta-G solvation = -25864.050389 eV Core-core repulsion = 22010.312815 eV Total energy + Delta-G solvation = -3853.737575 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.24255 -40.06150 -38.94056 -36.73263 -35.31194 -34.58065 -33.11969 -31.88075 -31.32728 -30.75733 -29.26191 -28.33807 -25.39668 -23.94366 -23.59761 -22.19768 -21.35393 -20.79990 -20.34820 -18.89225 -17.67497 -17.40026 -17.02358 -16.58613 -15.94862 -15.79312 -15.39981 -15.20347 -14.74186 -14.56065 -14.24554 -14.10145 -14.06208 -13.98884 -13.65412 -13.40274 -13.09398 -12.73022 -12.64806 -12.59523 -12.31033 -12.11340 -11.58128 -11.28427 -11.13950 -10.97016 -10.79693 -10.63369 -10.57552 -10.22900 -10.17726 -10.11694 -9.62082 -9.40962 -9.19539 -8.91979 -8.66028 -7.27006 -5.79179 -3.15453 0.49807 0.74362 2.25375 2.41673 2.79763 2.95949 3.34446 3.36521 3.42797 3.66229 4.00584 4.32161 4.44215 4.56122 4.59491 4.65266 4.68958 4.74773 4.84318 4.92919 5.06843 5.17540 5.31428 5.34547 5.45466 5.46009 5.56492 5.57543 5.70818 5.72437 5.80284 5.86586 5.88773 6.08160 6.14623 6.32381 6.37242 6.65120 6.69301 6.75950 7.33456 7.59601 7.90794 7.96757 8.00525 8.39570 9.18331 9.90375 10.09794 11.39173 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015869 B = 0.002477 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.031394 B =11300.005803 C =12393.451216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.500 3.500 3 O -0.477 6.477 4 N -0.663 5.663 5 C 0.353 3.647 6 C -0.150 4.150 7 C -0.057 4.057 8 C 0.561 3.439 9 O -0.533 6.533 10 N -0.709 5.709 11 C 0.145 3.855 12 H 0.093 0.907 13 C -0.162 4.162 14 C -0.140 4.140 15 C 0.157 3.843 16 N -0.757 5.757 17 C -0.246 4.246 18 H 0.089 0.911 19 C 0.003 3.997 20 N -0.933 5.933 21 Si 0.887 3.113 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.277 1.277 25 C -0.170 4.170 26 C 0.132 3.868 27 N -0.464 5.464 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.082 0.918 31 H 0.419 0.581 32 H 0.149 0.851 33 H 0.403 0.597 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.027 0.973 40 H 0.027 0.973 41 H 0.361 0.639 42 H 0.260 0.740 43 H 0.143 0.857 44 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.861 0.817 -19.696 27.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.286 3.714 3 O -0.346 6.346 4 N -0.311 5.311 5 C 0.122 3.878 6 C -0.174 4.174 7 C -0.069 4.069 8 C 0.346 3.654 9 O -0.410 6.410 10 N -0.361 5.361 11 C 0.041 3.959 12 H 0.111 0.889 13 C -0.220 4.220 14 C -0.178 4.178 15 C 0.030 3.970 16 N -0.402 5.402 17 C -0.375 4.375 18 H 0.107 0.893 19 C -0.193 4.193 20 N -0.581 5.581 21 Si 0.717 3.283 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.204 1.204 25 C -0.192 4.192 26 C -0.025 4.025 27 N -0.179 5.179 28 H 0.116 0.884 29 H 0.116 0.884 30 H 0.100 0.900 31 H 0.256 0.744 32 H 0.166 0.834 33 H 0.239 0.761 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.045 0.955 40 H 0.045 0.955 41 H 0.193 0.807 42 H 0.070 0.930 43 H 0.160 0.840 44 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -20.482 1.689 -19.514 28.340 hybrid contribution 1.743 -0.954 -0.378 2.022 sum -18.740 0.735 -19.892 27.339 Atomic orbital electron populations 1.21906 0.90594 1.05244 1.05231 1.21118 0.90731 0.83268 0.76256 1.90852 1.70002 1.30359 1.43369 1.43750 1.03813 1.11051 1.72460 1.18356 0.84919 0.89399 0.95109 1.21530 0.93888 0.98121 1.03859 1.20122 0.93598 0.93787 0.99351 1.18081 0.82360 0.88166 0.76745 1.90765 1.69593 1.30747 1.49864 1.46022 1.06076 1.10666 1.73292 1.21025 0.92545 0.85727 0.96612 0.88898 1.22172 1.02006 1.01241 0.96572 1.22134 0.95592 1.02757 0.97347 1.20623 0.89271 0.97695 0.89422 1.42708 1.02263 1.82809 1.12469 1.19055 0.94784 1.36955 0.86755 0.89292 1.24703 0.97269 1.01351 0.95939 1.69711 1.25700 1.52128 1.10592 0.86515 0.84816 0.77871 0.79100 1.21072 1.21710 1.20363 1.22315 1.01881 0.92464 1.02562 1.22677 0.88045 0.98661 0.93166 1.67519 1.09959 1.26886 1.13561 0.88399 0.88434 0.89958 0.74393 0.83364 0.76111 0.92232 0.92431 0.91341 0.90051 0.91283 0.95548 0.95534 0.80691 0.93028 0.83955 0.81561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.68 10.31 36.01 0.37 -0.31 16 2 C 0.50 4.51 7.90 -10.99 -0.09 4.43 16 3 O -0.48 -6.70 15.36 5.56 0.09 -6.61 16 4 N -0.66 -5.22 5.39 -11.44 -0.06 -5.28 16 5 C 0.35 3.87 7.42 -154.76 -1.15 2.72 16 6 C -0.15 -1.56 9.51 -38.80 -0.37 -1.93 16 7 C -0.06 -0.64 5.91 -104.68 -0.62 -1.26 16 8 C 0.56 7.11 7.76 -12.18 -0.09 7.02 16 9 O -0.53 -8.22 16.10 5.35 0.09 -8.13 16 10 N -0.71 -8.03 4.49 -54.65 -0.25 -8.27 16 11 C 0.15 1.74 2.57 -67.93 -0.17 1.56 16 12 H 0.09 1.27 7.58 -51.93 -0.39 0.87 16 13 C -0.16 -1.64 9.48 37.16 0.35 -1.29 16 14 C -0.14 -1.88 4.87 -26.73 -0.13 -2.01 16 15 C 0.16 2.90 6.15 -4.04 -0.02 2.87 16 16 N -0.76 -17.62 5.41 -59.91 -0.32 -17.94 16 17 C -0.25 -6.95 10.47 -15.06 -0.16 -7.11 16 18 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 19 C 0.00 0.09 5.50 -17.42 -0.10 0.00 16 20 N -0.93 -29.36 13.97 55.49 0.78 -28.59 16 21 Si 0.89 21.84 27.74 -169.99 -4.71 17.13 16 22 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 24 H -0.28 -6.38 6.52 56.52 0.37 -6.01 16 25 C -0.17 -1.65 9.61 -39.02 -0.37 -2.03 16 26 C 0.13 1.39 11.17 -17.62 -0.20 1.19 16 27 N -0.46 -5.95 7.86 -12.41 -0.10 -6.05 16 28 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 31 H 0.42 1.59 8.70 -40.82 -0.36 1.24 16 32 H 0.15 1.34 7.74 -52.49 -0.41 0.93 16 33 H 0.40 3.86 6.74 -40.82 -0.28 3.58 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 37 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.03 0.49 7.75 -51.93 -0.40 0.09 16 40 H 0.03 0.52 8.14 -51.92 -0.42 0.10 16 41 H 0.36 8.08 5.53 -40.82 -0.23 7.86 16 42 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 43 H 0.14 1.05 6.53 -52.49 -0.34 0.71 16 44 H 0.17 1.34 8.06 -52.49 -0.42 0.91 16 LS Contribution 373.94 15.07 5.64 5.64 Total: -1.00 -38.66 373.94 -7.83 -46.49 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -6.22 Total: 7.77 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: -2.75 Total: 3.86 kcal Atomic # 7 Polarization: -66.18 SS G_CDS: 0.05 Total: -66.13 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: 0.17 Total: -14.74 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.71 Total: 17.13 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -38.66 -7.83 -46.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754009041.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.032 kcal (2) G-P(sol) polarization free energy of solvation -38.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds