Wall clock time and date at job start Tue Mar 31 2020 12:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21282 * 120.00108 * 2 1 4 4 N 1.34776 * 120.00190 * 179.97438 * 2 1 3 5 5 C 1.39430 * 120.00098 * 185.09536 * 4 2 1 6 6 C 1.39016 * 119.63397 * 174.90405 * 5 4 2 7 7 C 1.39556 * 118.93310 * 180.26861 * 6 5 4 8 8 C 1.48154 * 120.88711 * 179.77834 * 7 6 5 9 9 O 1.21513 * 119.99732 * 359.72183 * 8 7 6 10 10 N 1.34774 * 120.00237 * 179.44625 * 8 7 6 11 11 C 1.46497 * 120.00204 * 180.27492 * 10 8 7 12 12 H 1.09001 * 109.47374 * 34.99669 * 11 10 8 13 13 C 1.53007 * 109.47254 * 275.00072 * 11 10 8 14 14 C 1.52999 * 109.47523 * 155.00157 * 11 10 8 15 15 C 1.53008 * 109.46757 * 295.00018 * 14 11 10 16 16 N 1.46500 * 109.46743 * 179.97438 * 15 14 11 17 17 C 1.36940 * 119.99638 * 179.97438 * 16 15 14 18 18 H 1.08003 * 119.99761 * 0.02562 * 17 16 15 19 19 C 1.38815 * 120.00077 * 180.02562 * 17 16 15 20 20 N 1.31622 * 119.99773 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00024 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47557 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47295 * 120.00248 * 21 19 17 24 24 H 1.48503 * 109.46954 * 240.00162 * 21 19 17 25 25 C 1.39981 * 118.22566 * 359.50963 * 7 6 5 26 26 C 1.38003 * 119.15787 * 0.24351 * 25 7 6 27 27 N 1.31878 * 120.98827 * 0.02562 * 26 25 7 28 28 H 1.08998 * 109.47177 * 240.00223 * 1 2 3 29 29 H 1.09001 * 109.47109 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.46841 * 120.00752 * 1 2 3 31 31 H 0.97000 * 120.00037 * 5.10007 * 4 2 1 32 32 H 1.07992 * 120.53013 * 0.02855 * 6 5 4 33 33 H 0.97000 * 120.00043 * 0.27636 * 10 8 7 34 34 H 1.08993 * 109.46890 * 300.00104 * 13 11 10 35 35 H 1.08999 * 109.47054 * 60.00244 * 13 11 10 36 36 H 1.09001 * 109.47076 * 180.02562 * 13 11 10 37 37 H 1.08998 * 109.47030 * 54.99735 * 14 11 10 38 38 H 1.08996 * 109.47315 * 175.00187 * 14 11 10 39 39 H 1.08998 * 109.47120 * 299.99662 * 15 14 11 40 40 H 1.09005 * 109.47025 * 59.99767 * 15 14 11 41 41 H 0.97000 * 120.00471 * 0.02562 * 16 15 14 42 42 H 0.96993 * 119.99900 * 179.97438 * 20 19 17 43 43 H 1.08001 * 120.42200 * 180.23059 * 25 7 6 44 44 H 1.07998 * 119.50577 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5710 -1.1695 0.1078 6 6 4.2502 -2.3777 0.2146 7 6 5.6411 -2.3628 0.3269 8 6 6.4080 -3.6246 0.4481 9 8 5.8257 -4.6910 0.4558 10 7 7.7519 -3.5899 0.5443 11 6 8.5106 -4.8379 0.6581 12 1 8.0240 -5.6141 0.0675 13 6 8.5634 -5.2708 2.1247 14 6 9.9333 -4.6190 0.1396 15 6 9.8880 -4.3079 -1.3579 16 7 11.2503 -4.0977 -1.8543 17 6 11.4599 -3.8044 -3.1754 18 1 10.6209 -3.7277 -3.8512 19 6 12.7506 -3.6058 -3.6460 20 7 13.7731 -3.6999 -2.8224 21 14 13.0365 -3.2050 -5.4479 22 1 11.7327 -3.1561 -6.1571 23 1 13.7106 -1.8867 -5.5609 24 1 13.8934 -4.2531 -6.0582 25 6 6.2929 -1.1240 0.3162 26 6 5.5434 0.0291 0.2011 27 7 4.2294 -0.0222 0.1023 28 1 -0.3633 -0.5138 0.8900 29 1 -0.3633 1.0277 -0.0005 30 1 -0.3633 -0.5140 -0.8899 31 1 1.6988 -2.0056 -0.0738 32 1 3.7098 -3.3127 0.2147 33 1 8.2167 -2.7385 0.5382 34 1 9.0499 -4.4946 2.7153 35 1 7.5499 -5.4268 2.4942 36 1 9.1283 -6.1991 2.2094 37 1 10.3890 -3.7833 0.6706 38 1 10.5233 -5.5203 0.3057 39 1 9.4323 -5.1436 -1.8890 40 1 9.2980 -3.4066 -1.5241 41 1 12.0038 -4.1671 -1.2474 42 1 14.6750 -3.5614 -3.1513 43 1 7.3686 -1.0712 0.3971 44 1 6.0405 0.9879 0.1926 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754009042.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:30 Heat of formation + Delta-G solvation = -17.187352 kcal Electronic energy + Delta-G solvation = -25817.394757 eV Core-core repulsion = 21963.452005 eV Total energy + Delta-G solvation = -3853.942752 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.23085 -40.03144 -38.92067 -36.61896 -35.30579 -34.41941 -33.09678 -31.82728 -31.28695 -30.54727 -29.25525 -27.91903 -25.36318 -23.99407 -23.59326 -22.27061 -21.44363 -20.67993 -20.31472 -18.85538 -17.51448 -17.15642 -16.92871 -16.52458 -15.95929 -15.73515 -15.38049 -15.17821 -14.70451 -14.66227 -14.13545 -14.08606 -14.01994 -13.79115 -13.49322 -13.37033 -13.07657 -12.87655 -12.68548 -12.47425 -12.28766 -11.92545 -11.25931 -11.13781 -11.06831 -10.83945 -10.71400 -10.62372 -10.59974 -10.19277 -10.10424 -10.03756 -9.73353 -9.40229 -9.13140 -8.89476 -8.65296 -6.95326 -5.79343 -3.08218 0.51364 0.75194 2.25326 2.41763 2.82284 3.00837 3.41978 3.48028 3.50062 3.67283 4.01237 4.35482 4.44261 4.55118 4.60360 4.70590 4.71879 4.84599 4.88247 4.92320 5.16781 5.27829 5.33036 5.35261 5.47833 5.52273 5.66995 5.69255 5.72955 5.82217 5.87632 5.96635 6.18390 6.22367 6.28782 6.34568 6.43015 6.76131 6.76592 6.81171 7.38931 7.59752 7.68568 7.91021 8.04822 8.39675 9.50944 10.08040 10.42653 11.43556 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013749 B = 0.002502 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.954960 B =11189.503785 C =12589.802699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.500 3.500 3 O -0.477 6.477 4 N -0.663 5.663 5 C 0.353 3.647 6 C -0.150 4.150 7 C -0.057 4.057 8 C 0.560 3.440 9 O -0.534 6.534 10 N -0.707 5.707 11 C 0.145 3.855 12 H 0.091 0.909 13 C -0.161 4.161 14 C -0.136 4.136 15 C 0.153 3.847 16 N -0.734 5.734 17 C -0.239 4.239 18 H 0.070 0.930 19 C -0.015 4.015 20 N -0.933 5.933 21 Si 0.907 3.093 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C -0.170 4.170 26 C 0.132 3.868 27 N -0.465 5.465 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.419 0.581 32 H 0.149 0.851 33 H 0.403 0.597 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.018 0.982 40 H 0.018 0.982 41 H 0.384 0.616 42 H 0.255 0.745 43 H 0.143 0.857 44 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.310 3.414 11.653 27.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.286 3.714 3 O -0.345 6.345 4 N -0.311 5.311 5 C 0.122 3.878 6 C -0.174 4.174 7 C -0.068 4.068 8 C 0.345 3.655 9 O -0.411 6.411 10 N -0.359 5.359 11 C 0.040 3.960 12 H 0.109 0.891 13 C -0.220 4.220 14 C -0.174 4.174 15 C 0.026 3.974 16 N -0.378 5.378 17 C -0.370 4.370 18 H 0.088 0.912 19 C -0.211 4.211 20 N -0.582 5.582 21 Si 0.738 3.262 22 H -0.206 1.206 23 H -0.218 1.218 24 H -0.218 1.218 25 C -0.192 4.192 26 C -0.026 4.026 27 N -0.180 5.180 28 H 0.109 0.891 29 H 0.115 0.885 30 H 0.109 0.891 31 H 0.256 0.744 32 H 0.166 0.834 33 H 0.239 0.761 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.100 0.900 39 H 0.036 0.964 40 H 0.036 0.964 41 H 0.217 0.783 42 H 0.065 0.935 43 H 0.161 0.839 44 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -24.880 4.253 11.412 27.701 hybrid contribution 1.021 -0.635 -0.827 1.459 sum -23.859 3.618 10.586 26.351 Atomic orbital electron populations 1.21945 0.90601 1.06068 1.04553 1.21114 0.90730 0.83264 0.76294 1.90851 1.70068 1.30371 1.43253 1.43703 1.03826 1.11049 1.72540 1.18350 0.84884 0.89414 0.95164 1.21527 0.93907 0.98089 1.03893 1.20140 0.93574 0.93825 0.99281 1.18077 0.82464 0.88139 0.76782 1.90762 1.69614 1.30714 1.50024 1.46038 1.05897 1.10755 1.73200 1.21060 0.92171 0.86022 0.96713 0.89081 1.22168 1.02178 1.01765 0.95857 1.22083 0.94134 1.03130 0.98044 1.20642 0.88869 0.97432 0.90486 1.42368 1.01746 1.85366 1.08323 1.19270 0.92236 1.39658 0.85851 0.91198 1.24751 0.95561 1.02789 0.97966 1.69666 0.98064 1.56703 1.33781 0.86115 0.77667 0.77605 0.84812 1.20554 1.21822 1.21825 1.22330 1.01869 0.92459 1.02556 1.22677 0.88035 0.98681 0.93194 1.67518 1.09992 1.26907 1.13550 0.89074 0.88482 0.89083 0.74390 0.83377 0.76109 0.92398 0.92366 0.91305 0.91239 0.90008 0.96386 0.96414 0.78298 0.93549 0.83910 0.81568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.67 10.32 36.00 0.37 -0.30 16 2 C 0.50 4.49 7.90 -10.99 -0.09 4.41 16 3 O -0.48 -6.67 15.35 5.56 0.09 -6.59 16 4 N -0.66 -5.24 5.39 -11.44 -0.06 -5.30 16 5 C 0.35 3.89 7.42 -154.75 -1.15 2.74 16 6 C -0.15 -1.58 9.51 -38.80 -0.37 -1.95 16 7 C -0.06 -0.65 5.91 -104.68 -0.62 -1.27 16 8 C 0.56 7.31 7.76 -12.19 -0.09 7.22 16 9 O -0.53 -8.43 16.10 5.35 0.09 -8.34 16 10 N -0.71 -8.43 4.49 -54.65 -0.25 -8.68 16 11 C 0.14 1.84 2.57 -67.93 -0.17 1.67 16 12 H 0.09 1.31 7.58 -51.93 -0.39 0.92 16 13 C -0.16 -1.76 9.48 37.16 0.35 -1.41 16 14 C -0.14 -1.99 4.87 -26.73 -0.13 -2.12 16 15 C 0.15 2.98 6.15 -4.04 -0.02 2.96 16 16 N -0.73 -18.31 5.60 -59.90 -0.34 -18.65 16 17 C -0.24 -6.69 9.99 -15.06 -0.15 -6.85 16 18 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 19 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 20 N -0.93 -28.07 13.06 55.49 0.72 -27.35 16 21 Si 0.91 22.46 29.55 -169.99 -5.02 17.43 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 25 C -0.17 -1.69 9.61 -39.01 -0.37 -2.06 16 26 C 0.13 1.40 11.17 -17.62 -0.20 1.20 16 27 N -0.46 -5.99 7.86 -12.41 -0.10 -6.09 16 28 H 0.09 0.18 8.14 -51.93 -0.42 -0.25 16 29 H 0.10 0.42 8.12 -51.93 -0.42 0.00 16 30 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.42 1.62 8.70 -40.82 -0.36 1.26 16 32 H 0.15 1.35 7.74 -52.49 -0.41 0.95 16 33 H 0.40 4.14 6.74 -40.82 -0.28 3.86 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.02 0.35 7.75 -51.93 -0.40 -0.06 16 41 H 0.38 9.97 7.67 -40.82 -0.31 9.66 16 42 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 43 H 0.14 1.11 6.53 -52.49 -0.34 0.76 16 44 H 0.17 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 377.03 15.07 5.68 5.68 Total: -1.00 -37.66 377.03 -8.19 -45.85 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -6.26 Total: 8.32 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: -2.74 Total: 3.71 kcal Atomic # 7 Polarization: -66.04 SS G_CDS: -0.02 Total: -66.06 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: 0.17 Total: -14.93 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -37.66 -8.19 -45.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754009042.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.659 kcal (2) G-P(sol) polarization free energy of solvation -37.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds