Wall clock time and date at job start Tue Mar 31 2020 13:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.46893 * 2 1 4 4 C 1.46504 * 119.99792 * 263.91126 * 3 2 1 5 5 C 1.53000 * 109.47240 * 270.00252 * 4 3 2 6 6 N 1.46494 * 109.47186 * 179.97438 * 5 4 3 7 7 C 1.36942 * 120.00206 * 179.97438 * 6 5 4 8 8 H 1.08004 * 119.99665 * 359.97438 * 7 6 5 9 9 C 1.38810 * 120.00275 * 180.02562 * 7 6 5 10 10 N 1.31611 * 120.00026 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 119.99943 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47461 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47276 * 119.99475 * 11 9 7 14 14 H 1.48501 * 109.47045 * 239.99391 * 11 9 7 15 15 C 1.34775 * 120.00159 * 83.91348 * 3 2 1 16 16 O 1.21491 * 119.99892 * 174.71999 * 15 3 2 17 17 C 1.48334 * 119.99882 * 354.71600 * 15 3 2 18 18 C 1.39305 * 119.56986 * 180.02562 * 17 15 3 19 19 C 1.38454 * 119.18670 * 180.25515 * 18 17 15 20 20 C 1.50701 * 120.81787 * 179.77599 * 19 18 17 21 21 C 1.39864 * 118.35767 * 359.49803 * 19 18 17 22 22 C 1.48001 * 120.46087 * 180.22989 * 21 19 18 23 23 N 1.34774 * 120.00232 * 184.26375 * 22 21 19 24 24 O 1.21535 * 120.00266 * 4.27108 * 22 21 19 25 25 C 1.39724 * 119.07787 * 0.25678 * 21 19 18 26 26 N 1.31423 * 120.71876 * 359.97438 * 25 21 19 27 27 H 1.08998 * 109.47004 * 300.00040 * 1 2 3 28 28 H 1.08994 * 109.47164 * 60.00611 * 1 2 3 29 29 H 1.09005 * 109.46850 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47004 * 239.99960 * 2 1 3 31 31 H 1.08994 * 109.47119 * 119.99944 * 2 1 3 32 32 H 1.08997 * 109.47297 * 30.00072 * 4 3 2 33 33 H 1.08996 * 109.47272 * 149.99782 * 4 3 2 34 34 H 1.09004 * 109.47194 * 300.00276 * 5 4 3 35 35 H 1.09005 * 109.47295 * 59.99828 * 5 4 3 36 36 H 0.96998 * 120.00161 * 0.02562 * 6 5 4 37 37 H 0.97003 * 120.00308 * 180.02562 * 10 9 7 38 38 H 1.08003 * 120.40575 * 0.02562 * 18 17 15 39 39 H 1.09002 * 109.47056 * 262.86439 * 20 19 18 40 40 H 1.08992 * 109.46896 * 142.86355 * 20 19 18 41 41 H 1.09008 * 109.46884 * 22.86604 * 20 19 18 42 42 H 0.97000 * 119.99812 * 0.02562 * 23 22 21 43 43 H 0.96997 * 120.00437 * 180.02562 * 23 22 21 44 44 H 1.08003 * 119.64289 * 180.02562 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3893 2.0270 -1.2616 5 6 3.8708 1.7736 -1.5479 6 7 4.2416 2.4188 -2.8097 7 6 5.5269 2.3279 -3.2734 8 1 6.2673 1.7809 -2.7086 9 6 5.8785 2.9397 -4.4688 10 7 4.9764 3.6067 -5.1569 11 14 7.6316 2.8150 -5.1017 12 1 8.4456 2.0160 -4.1507 13 1 7.6321 2.1537 -6.4312 14 1 8.2110 4.1767 -5.2259 15 6 2.1263 2.0578 1.1606 16 8 2.6204 3.1676 1.1730 17 6 1.6416 1.4475 2.4227 18 6 1.7571 2.1551 3.6171 19 6 1.3069 1.5757 4.7913 20 6 1.4184 2.3061 6.1048 21 6 0.7409 0.2984 4.7274 22 6 0.2400 -0.3625 5.9532 23 7 -0.2248 -1.6263 5.8956 24 8 0.2475 0.2344 7.0119 25 6 0.6553 -0.3453 3.4902 26 7 1.0985 0.2368 2.3985 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.7873 1.6150 -2.0715 33 1 2.2120 3.0998 -1.1866 34 1 4.4730 2.1856 -0.7380 35 1 4.0481 0.7007 -1.6229 36 1 3.5770 2.9111 -3.3164 37 1 5.2219 4.0340 -5.9924 38 1 2.1957 3.1419 3.6276 39 1 2.3124 1.9721 6.6315 40 1 0.5387 2.0962 6.7130 41 1 1.4849 3.3783 5.9198 42 1 -0.2306 -2.1028 5.0508 43 1 -0.5534 -2.0593 6.6989 44 1 0.2195 -1.3317 3.4302 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754068128.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:17 Heat of formation + Delta-G solvation = -0.467747 kcal Electronic energy + Delta-G solvation = -26574.860643 eV Core-core repulsion = 22721.642907 eV Total energy + Delta-G solvation = -3853.217736 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.44468 -39.98680 -38.73819 -36.33889 -34.86558 -34.58895 -33.88712 -31.95909 -31.43745 -30.21942 -28.31257 -27.84681 -25.51078 -23.68740 -23.54410 -22.88341 -21.83995 -21.28553 -19.42242 -18.49218 -17.93075 -17.13484 -17.09319 -16.65465 -15.80412 -15.61315 -15.51245 -15.31133 -14.83316 -14.52365 -14.10650 -14.05682 -13.91806 -13.57091 -13.31864 -13.15055 -13.01051 -12.89227 -12.76961 -12.59666 -12.40746 -11.82288 -11.26029 -11.09380 -10.96413 -10.86888 -10.67309 -10.44416 -10.28667 -10.22011 -10.04991 -9.87020 -9.73317 -9.65956 -9.40842 -8.84819 -8.48904 -6.90054 -5.73460 -3.02446 -0.11120 0.74138 2.10142 2.81380 2.86085 2.94188 3.46150 3.51532 3.53108 3.54106 3.66066 4.13989 4.22949 4.26686 4.53357 4.64136 4.70958 5.06036 5.14786 5.27419 5.30735 5.39665 5.40271 5.51253 5.57523 5.63300 5.71298 5.78727 5.86841 5.91976 5.99340 6.04759 6.09917 6.20667 6.25677 6.37797 6.61181 6.72054 6.76516 6.94042 7.20721 7.48854 7.67629 7.73809 8.15336 8.45098 9.56083 10.12343 10.47523 11.49582 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.025321 B = 0.002429 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.531120 B =11525.197128 C =11977.496605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.105 3.895 3 N -0.584 5.584 4 C 0.107 3.893 5 C 0.143 3.857 6 N -0.730 5.730 7 C -0.236 4.236 8 H 0.071 0.929 9 C -0.015 4.015 10 N -0.933 5.933 11 Si 0.908 3.092 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.291 1.291 15 C 0.559 3.441 16 O -0.521 6.521 17 C 0.116 3.884 18 C -0.122 4.122 19 C 0.018 3.982 20 C -0.130 4.130 21 C -0.187 4.187 22 C 0.571 3.429 23 N -0.849 5.849 24 O -0.530 6.530 25 C 0.129 3.871 26 N -0.451 5.451 27 H 0.058 0.942 28 H 0.047 0.953 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.105 0.895 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.024 0.976 35 H 0.019 0.981 36 H 0.384 0.616 37 H 0.255 0.745 38 H 0.157 0.843 39 H 0.083 0.917 40 H 0.106 0.894 41 H 0.069 0.931 42 H 0.402 0.598 43 H 0.408 0.592 44 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.087 -12.728 22.620 30.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.018 4.018 3 N -0.315 5.315 4 C -0.015 4.015 5 C 0.015 3.985 6 N -0.375 5.375 7 C -0.367 4.367 8 H 0.088 0.912 9 C -0.211 4.211 10 N -0.582 5.582 11 Si 0.740 3.260 12 H -0.206 1.206 13 H -0.219 1.219 14 H -0.218 1.218 15 C 0.344 3.656 16 O -0.396 6.396 17 C -0.021 4.021 18 C -0.143 4.143 19 C 0.009 3.991 20 C -0.186 4.186 21 C -0.192 4.192 22 C 0.356 3.644 23 N -0.413 5.413 24 O -0.407 6.407 25 C -0.031 4.031 26 N -0.163 5.163 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.122 0.878 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.042 0.958 35 H 0.037 0.963 36 H 0.217 0.783 37 H 0.064 0.936 38 H 0.175 0.825 39 H 0.101 0.899 40 H 0.124 0.876 41 H 0.088 0.912 42 H 0.231 0.769 43 H 0.239 0.761 44 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -14.607 -12.048 22.357 29.297 hybrid contribution 0.617 -0.081 -0.056 0.625 sum -13.990 -12.129 22.301 28.986 Atomic orbital electron populations 1.22069 0.95993 1.01617 1.01416 1.21968 0.94621 0.81494 1.03668 1.47844 1.62714 1.14631 1.06323 1.21799 0.97419 0.98964 0.83357 1.20906 0.91712 0.95883 0.90031 1.42216 1.10233 1.63413 1.21655 1.19254 0.87074 1.27387 1.02986 0.91151 1.24748 0.97897 1.00629 0.97816 1.69669 1.32668 1.39385 1.16510 0.86091 0.84281 0.77222 0.78453 1.20569 1.21862 1.21830 1.17908 0.79622 0.85199 0.82826 1.90839 1.43749 1.19439 1.85559 1.21525 0.95314 0.90800 0.94467 1.22113 0.99130 1.02239 0.90794 1.20509 0.90080 0.91923 0.96571 1.21224 1.05431 0.99125 0.92854 1.20893 1.06060 0.97160 0.95109 1.18061 0.76734 0.81600 0.87975 1.43753 1.67041 1.15276 1.15219 1.90767 1.55623 1.63489 1.30812 1.23041 0.94121 0.99138 0.86848 1.68304 1.09353 1.09419 1.29256 0.92329 0.93365 0.92057 0.90889 0.87781 0.90134 0.89730 0.95805 0.96324 0.78269 0.93556 0.82549 0.89892 0.87555 0.91174 0.76867 0.76080 0.81925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.49 37.16 0.35 -1.13 16 2 C 0.11 1.20 5.69 -4.04 -0.02 1.18 16 3 N -0.58 -8.70 2.49 -174.62 -0.43 -9.14 16 4 C 0.11 1.87 5.45 -4.04 -0.02 1.85 16 5 C 0.14 3.09 6.58 -4.05 -0.03 3.06 16 6 N -0.73 -19.30 5.60 -59.91 -0.34 -19.64 16 7 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 8 H 0.07 2.00 7.83 -52.48 -0.41 1.59 16 9 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 10 N -0.93 -28.79 13.06 55.49 0.72 -28.07 16 11 Si 0.91 22.92 29.55 -169.99 -5.02 17.90 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 14 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 15 C 0.56 8.79 7.61 -12.11 -0.09 8.70 16 16 O -0.52 -10.01 15.94 5.37 0.09 -9.92 16 17 C 0.12 1.42 6.45 -82.93 -0.53 0.88 16 18 C -0.12 -1.35 9.30 -39.11 -0.36 -1.71 16 19 C 0.02 0.17 5.95 -103.93 -0.62 -0.45 16 20 C -0.13 -1.11 8.99 36.01 0.32 -0.78 16 21 C -0.19 -1.50 5.89 -104.73 -0.62 -2.12 16 22 C 0.57 4.32 8.03 -12.26 -0.10 4.22 16 23 N -0.85 -2.83 8.83 30.56 0.27 -2.57 16 24 O -0.53 -5.68 14.21 5.33 0.08 -5.61 16 25 C 0.13 0.89 10.70 -17.17 -0.18 0.71 16 26 N -0.45 -4.35 3.96 -9.48 -0.04 -4.39 16 27 H 0.06 0.60 6.25 -51.93 -0.32 0.27 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.83 8.03 -51.93 -0.42 0.41 16 31 H 0.10 1.11 5.59 -51.93 -0.29 0.82 16 32 H 0.08 1.30 8.07 -51.93 -0.42 0.88 16 33 H 0.08 1.62 7.50 -51.93 -0.39 1.23 16 34 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.38 10.49 7.67 -40.82 -0.31 10.18 16 37 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 38 H 0.16 1.73 7.63 -52.48 -0.40 1.33 16 39 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.11 1.01 5.68 -51.93 -0.30 0.71 16 41 H 0.07 0.51 8.06 -51.92 -0.42 0.09 16 42 H 0.40 0.26 6.91 -40.82 -0.28 -0.03 16 43 H 0.41 0.90 8.93 -40.82 -0.36 0.53 16 44 H 0.16 0.43 6.44 -52.48 -0.34 0.09 16 LS Contribution 364.19 15.07 5.49 5.49 Total: -1.00 -36.36 364.19 -7.25 -43.61 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -5.91 Total: 5.47 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: -2.15 Total: 6.86 kcal Atomic # 7 Polarization: -63.99 SS G_CDS: 0.19 Total: -63.80 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: 0.16 Total: -15.53 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -5.02 Total: 17.90 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -36.36 -7.25 -43.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754068128.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.141 kcal (2) G-P(sol) polarization free energy of solvation -36.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds