Wall clock time and date at job start Tue Mar 31 2020 14:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21279 * 119.99507 * 2 1 4 4 N 1.34772 * 120.00397 * 179.97438 * 2 1 3 5 5 C 1.39456 * 120.00109 * 183.73073 * 4 2 1 6 6 C 1.39370 * 120.39510 * 35.30125 * 5 4 2 7 7 C 1.38294 * 118.43144 * 179.97438 * 6 5 4 8 8 C 1.39489 * 119.14682 * 359.97438 * 7 6 5 9 9 C 1.47915 * 119.64116 * 180.02562 * 8 7 6 10 10 O 1.21545 * 120.00269 * 353.90222 * 9 8 7 11 11 N 1.34775 * 119.99662 * 173.89713 * 9 8 7 12 12 C 1.46495 * 120.00149 * 0.39094 * 11 9 8 13 13 C 1.46501 * 119.99740 * 180.38998 * 11 9 8 14 14 C 1.53006 * 109.46897 * 90.00286 * 13 11 9 15 15 C 1.53004 * 109.46814 * 179.97438 * 14 13 11 16 16 N 1.46498 * 109.47099 * 179.97438 * 15 14 13 17 17 C 1.36934 * 120.00218 * 180.02562 * 16 15 14 18 18 H 1.07999 * 120.00020 * 359.97438 * 17 16 15 19 19 C 1.38814 * 120.00107 * 180.02562 * 17 16 15 20 20 N 1.31617 * 119.99956 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 120.00005 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47126 * 89.99998 * 21 19 17 23 23 H 1.48501 * 109.47190 * 210.00218 * 21 19 17 24 24 H 1.48506 * 109.47100 * 330.00382 * 21 19 17 25 25 N 1.32809 * 120.71271 * 0.02562 * 8 7 6 26 26 C 1.31356 * 121.71363 * 0.02562 * 25 8 7 27 27 H 1.09006 * 109.46860 * 239.99696 * 1 2 3 28 28 H 1.08997 * 109.47424 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.46825 * 120.00371 * 1 2 3 30 30 H 0.97006 * 119.99801 * 3.73082 * 4 2 1 31 31 H 1.07998 * 120.78693 * 359.94950 * 6 5 4 32 32 H 1.08002 * 120.42469 * 179.72061 * 7 6 5 33 33 H 1.09002 * 109.47610 * 83.92236 * 12 11 9 34 34 H 1.08998 * 109.47392 * 203.91887 * 12 11 9 35 35 H 1.08999 * 109.47457 * 323.92524 * 12 11 9 36 36 H 1.09002 * 109.46886 * 210.00173 * 13 11 9 37 37 H 1.09000 * 109.47391 * 330.00002 * 13 11 9 38 38 H 1.08995 * 109.46871 * 299.99599 * 14 13 11 39 39 H 1.08998 * 109.46860 * 59.99893 * 14 13 11 40 40 H 1.09002 * 109.46999 * 299.99905 * 15 14 13 41 41 H 1.09009 * 109.47148 * 59.99920 * 15 14 13 42 42 H 0.97002 * 119.99423 * 359.97438 * 16 15 14 43 43 H 0.97003 * 119.99653 * 179.97438 * 20 19 17 44 44 H 1.07997 * 119.60818 * 180.02562 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1810 -1.1671 0.0005 5 6 3.5733 -1.1683 0.0791 6 6 4.2372 -0.2106 0.8436 7 6 5.6187 -0.2498 0.8933 8 6 6.2963 -1.2402 0.1820 9 6 7.7738 -1.2927 0.2280 10 8 8.3960 -0.4130 0.7904 11 7 8.4301 -2.3161 -0.3537 12 6 7.6805 -3.3719 -1.0389 13 6 9.8930 -2.3726 -0.3008 14 6 10.3289 -3.1395 0.9493 15 6 11.8568 -3.1991 1.0042 16 7 12.2742 -3.9328 2.2015 17 6 13.6059 -4.1143 2.4639 18 1 14.3485 -3.7168 1.7879 19 6 14.0013 -4.8101 3.5981 20 7 15.2813 -4.9849 3.8499 21 14 12.7169 -5.4982 4.7669 22 1 12.3562 -6.8770 4.3498 23 1 13.2670 -5.5261 6.1460 24 1 11.5065 -4.6385 4.7340 25 7 5.6291 -2.1364 -0.5360 26 6 4.3174 -2.1272 -0.6058 27 1 -0.3633 -0.5139 0.8900 28 1 -0.3634 1.0276 0.0005 29 1 -0.3633 -0.5139 -0.8900 30 1 1.6975 -2.0064 -0.0538 31 1 3.6860 0.5447 1.3840 32 1 6.1661 0.4794 1.4721 33 1 7.4533 -3.0545 -2.0566 34 1 8.2791 -4.2824 -1.0676 35 1 6.7514 -3.5647 -0.5025 36 1 10.2693 -2.8809 -1.1886 37 1 10.2947 -1.3599 -0.2644 38 1 9.9526 -2.6311 1.8370 39 1 9.9272 -4.1521 0.9128 40 1 12.2327 -3.7077 0.1164 41 1 12.2588 -2.1865 1.0405 42 1 11.6072 -4.2895 2.8088 43 1 15.5576 -5.4708 4.6427 44 1 3.8095 -2.8726 -1.1997 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754377432.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:48 Heat of formation + Delta-G solvation = 1.185338 kcal Electronic energy + Delta-G solvation = -25725.086303 eV Core-core repulsion = 21871.940250 eV Total energy + Delta-G solvation = -3853.146053 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.51622 -40.31427 -38.98346 -36.27331 -35.77541 -34.91865 -32.83668 -32.21031 -31.57340 -30.34653 -29.36865 -26.91977 -25.92829 -24.48392 -23.83394 -22.39219 -21.37044 -21.00805 -20.02352 -18.57934 -17.83439 -17.48209 -17.41721 -16.97674 -16.09765 -15.72233 -15.63287 -15.12507 -14.87492 -14.48664 -14.46713 -14.04239 -14.00436 -13.86395 -13.49410 -13.30018 -13.06886 -12.97384 -12.88473 -12.73799 -12.37360 -12.12076 -11.94893 -11.32458 -11.12231 -10.88180 -10.80385 -10.74705 -10.44411 -10.36564 -10.12662 -10.07135 -9.55419 -9.49853 -8.89933 -8.83146 -8.59971 -7.16356 -5.71024 -3.05883 0.18413 0.79390 1.83547 2.29377 2.59374 2.89577 3.42179 3.45965 3.49297 3.51600 3.78529 3.98683 4.25205 4.37672 4.47846 4.59361 4.64938 4.65295 4.70000 5.12206 5.15627 5.16874 5.20898 5.31485 5.37101 5.55369 5.57899 5.63957 5.68302 5.69480 5.89081 5.94968 5.99968 6.08988 6.21692 6.33461 6.55380 6.58734 6.82323 6.84648 7.20383 7.35456 7.38609 8.05673 8.07718 8.48340 9.27678 10.00346 10.20800 11.47517 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024682 B = 0.002101 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.156601 B =13322.326470 C =13668.537660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.510 3.490 3 O -0.520 6.520 4 N -0.670 5.670 5 C 0.113 3.887 6 C -0.085 4.085 7 C -0.086 4.086 8 C 0.065 3.935 9 C 0.565 3.435 10 O -0.530 6.530 11 N -0.595 5.595 12 C 0.078 3.922 13 C 0.117 3.883 14 C -0.143 4.143 15 C 0.160 3.840 16 N -0.757 5.757 17 C -0.242 4.242 18 H 0.091 0.909 19 C 0.002 3.998 20 N -0.935 5.935 21 Si 0.885 3.115 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.277 1.277 25 N -0.429 5.429 26 C 0.072 3.928 27 H 0.094 0.906 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.416 0.584 31 H 0.150 0.850 32 H 0.153 0.847 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.102 0.898 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.028 0.972 41 H 0.029 0.971 42 H 0.360 0.640 43 H 0.259 0.741 44 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.247 5.785 -12.334 38.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.298 3.702 3 O -0.394 6.394 4 N -0.317 5.317 5 C 0.016 3.984 6 C -0.113 4.113 7 C -0.108 4.108 8 C -0.073 4.073 9 C 0.352 3.648 10 O -0.406 6.406 11 N -0.326 5.326 12 C -0.065 4.065 13 C -0.006 4.006 14 C -0.182 4.182 15 C 0.033 3.967 16 N -0.402 5.402 17 C -0.372 4.372 18 H 0.108 0.892 19 C -0.193 4.193 20 N -0.584 5.584 21 Si 0.715 3.285 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.203 1.203 25 N -0.140 5.140 26 C -0.091 4.091 27 H 0.113 0.887 28 H 0.117 0.883 29 H 0.112 0.888 30 H 0.253 0.747 31 H 0.168 0.832 32 H 0.171 0.829 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.120 0.880 36 H 0.100 0.900 37 H 0.105 0.895 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.046 0.954 41 H 0.047 0.953 42 H 0.193 0.807 43 H 0.069 0.931 44 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -34.782 6.427 -12.515 37.520 hybrid contribution -1.638 -0.509 1.283 2.143 sum -36.420 5.918 -11.232 38.570 Atomic orbital electron populations 1.21940 0.90064 1.06367 1.04842 1.21163 0.91165 0.82946 0.74877 1.90792 1.70622 1.31139 1.46891 1.43492 1.04464 1.10406 1.73361 1.18994 0.84077 0.98487 0.96839 1.21584 0.94075 0.98860 0.96772 1.22063 0.93791 0.97518 0.97392 1.21184 0.94546 0.93759 0.97774 1.17810 0.85533 0.82226 0.79256 1.90826 1.67571 1.38321 1.43846 1.47762 1.07456 1.23655 1.53690 1.22325 0.97516 0.89151 0.97472 1.21562 0.77812 1.02488 0.98697 1.22113 0.97942 1.00180 0.97955 1.20527 0.90377 0.95598 0.90243 1.42706 1.04862 1.67070 1.25584 1.19091 0.82320 1.29159 1.06630 0.89160 1.24674 0.95680 1.00768 0.98212 1.69707 1.13309 1.46729 1.28618 0.86525 0.81582 0.79143 0.81202 1.21126 1.21723 1.20347 1.68103 1.08107 1.21518 1.16301 1.22787 0.89641 0.98965 0.97688 0.88736 0.88307 0.88810 0.74685 0.83239 0.82886 0.92631 0.91971 0.88042 0.90026 0.89481 0.91632 0.91958 0.95440 0.95319 0.80730 0.93128 0.81792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.20 10.32 36.01 0.37 0.17 16 2 C 0.51 2.80 7.70 -10.99 -0.08 2.72 16 3 O -0.52 -5.39 14.87 5.56 0.08 -5.31 16 4 N -0.67 -2.67 5.33 -9.74 -0.05 -2.72 16 5 C 0.11 0.82 6.27 -83.55 -0.52 0.30 16 6 C -0.09 -0.80 8.75 -39.14 -0.34 -1.14 16 7 C -0.09 -0.95 9.62 -39.09 -0.38 -1.33 16 8 C 0.07 0.79 6.62 -83.02 -0.55 0.24 16 9 C 0.57 8.34 7.65 -12.30 -0.09 8.25 16 10 O -0.53 -9.50 15.91 5.33 0.08 -9.41 16 11 N -0.59 -7.90 2.87 -182.67 -0.52 -8.42 16 12 C 0.08 0.79 9.25 59.84 0.55 1.34 16 13 C 0.12 1.64 5.38 -4.04 -0.02 1.62 16 14 C -0.14 -2.40 5.65 -26.73 -0.15 -2.55 16 15 C 0.16 3.28 6.26 -4.04 -0.03 3.25 16 16 N -0.76 -19.16 5.41 -59.90 -0.32 -19.49 16 17 C -0.24 -7.19 10.47 -15.06 -0.16 -7.35 16 18 H 0.09 2.84 8.06 -52.49 -0.42 2.42 16 19 C 0.00 0.06 5.50 -17.43 -0.10 -0.03 16 20 N -0.94 -30.25 13.97 55.49 0.78 -29.47 16 21 Si 0.89 22.97 27.74 -169.99 -4.71 18.26 16 22 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 23 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 24 H -0.28 -6.87 6.52 56.52 0.37 -6.50 16 25 N -0.43 -4.17 6.02 -9.64 -0.06 -4.23 16 26 C 0.07 0.49 11.12 -17.33 -0.19 0.30 16 27 H 0.09 -0.06 8.14 -51.93 -0.42 -0.48 16 28 H 0.10 0.19 8.12 -51.93 -0.42 -0.23 16 29 H 0.09 -0.07 8.14 -51.93 -0.42 -0.49 16 30 H 0.42 0.04 8.82 -40.82 -0.36 -0.32 16 31 H 0.15 1.39 6.60 -52.49 -0.35 1.05 16 32 H 0.15 1.69 7.65 -52.49 -0.40 1.29 16 33 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 34 H 0.06 0.58 8.03 -51.93 -0.42 0.16 16 35 H 0.10 0.99 5.34 -51.95 -0.28 0.72 16 36 H 0.08 0.97 8.07 -51.93 -0.42 0.55 16 37 H 0.09 1.33 7.41 -51.93 -0.39 0.94 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.03 0.61 8.14 -51.92 -0.42 0.18 16 42 H 0.36 8.93 5.53 -40.82 -0.23 8.70 16 43 H 0.26 7.94 8.31 -40.82 -0.34 7.60 16 44 H 0.16 0.53 8.06 -52.49 -0.42 0.11 16 LS Contribution 370.39 15.07 5.58 5.58 Total: -1.00 -39.11 370.39 -7.06 -46.18 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -6.23 Total: 3.24 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: -1.69 Total: 5.80 kcal Atomic # 7 Polarization: -64.14 SS G_CDS: -0.18 Total: -64.33 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: 0.17 Total: -14.72 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -4.71 Total: 18.26 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -39.11 -7.06 -46.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754377432.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.362 kcal (2) G-P(sol) polarization free energy of solvation -39.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds