Wall clock time and date at job start Tue Mar 31 2020 14:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21279 * 119.99507 * 2 1 4 4 N 1.34772 * 120.00397 * 179.97438 * 2 1 3 5 5 C 1.39456 * 120.00109 * 183.73073 * 4 2 1 6 6 C 1.39370 * 120.39510 * 35.30125 * 5 4 2 7 7 C 1.38294 * 118.43144 * 179.97438 * 6 5 4 8 8 C 1.39489 * 119.14682 * 359.97438 * 7 6 5 9 9 C 1.47915 * 119.64116 * 180.02562 * 8 7 6 10 10 O 1.21545 * 120.00269 * 353.90222 * 9 8 7 11 11 N 1.34775 * 119.99662 * 173.89713 * 9 8 7 12 12 C 1.46495 * 120.00149 * 0.39094 * 11 9 8 13 13 C 1.46501 * 119.99740 * 180.38998 * 11 9 8 14 14 C 1.53006 * 109.46897 * 90.00286 * 13 11 9 15 15 C 1.53004 * 109.46814 * 179.97438 * 14 13 11 16 16 N 1.46498 * 109.47099 * 179.97438 * 15 14 13 17 17 C 1.36934 * 120.00218 * 180.02562 * 16 15 14 18 18 H 1.07999 * 120.00020 * 359.97438 * 17 16 15 19 19 C 1.38814 * 120.00107 * 180.02562 * 17 16 15 20 20 N 1.31617 * 119.99956 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 120.00005 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47126 * 89.99998 * 21 19 17 23 23 H 1.48501 * 109.47190 * 210.00218 * 21 19 17 24 24 H 1.48506 * 109.47100 * 330.00382 * 21 19 17 25 25 N 1.32809 * 120.71271 * 0.02562 * 8 7 6 26 26 C 1.31356 * 121.71363 * 0.02562 * 25 8 7 27 27 H 1.09006 * 109.46860 * 239.99696 * 1 2 3 28 28 H 1.08997 * 109.47424 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.46825 * 120.00371 * 1 2 3 30 30 H 0.97006 * 119.99801 * 3.73082 * 4 2 1 31 31 H 1.07998 * 120.78693 * 359.94950 * 6 5 4 32 32 H 1.08002 * 120.42469 * 179.72061 * 7 6 5 33 33 H 1.09002 * 109.47610 * 83.92236 * 12 11 9 34 34 H 1.08998 * 109.47392 * 203.91887 * 12 11 9 35 35 H 1.08999 * 109.47457 * 323.92524 * 12 11 9 36 36 H 1.09002 * 109.46886 * 210.00173 * 13 11 9 37 37 H 1.09000 * 109.47391 * 330.00002 * 13 11 9 38 38 H 1.08995 * 109.46871 * 299.99599 * 14 13 11 39 39 H 1.08998 * 109.46860 * 59.99893 * 14 13 11 40 40 H 1.09002 * 109.46999 * 299.99905 * 15 14 13 41 41 H 1.09009 * 109.47148 * 59.99920 * 15 14 13 42 42 H 0.97002 * 119.99423 * 359.97438 * 16 15 14 43 43 H 0.97003 * 119.99653 * 179.97438 * 20 19 17 44 44 H 1.07997 * 119.60818 * 180.02562 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1810 -1.1671 0.0005 5 6 3.5733 -1.1683 0.0791 6 6 4.2372 -0.2106 0.8436 7 6 5.6187 -0.2498 0.8933 8 6 6.2963 -1.2402 0.1820 9 6 7.7738 -1.2927 0.2280 10 8 8.3960 -0.4130 0.7904 11 7 8.4301 -2.3161 -0.3537 12 6 7.6805 -3.3719 -1.0389 13 6 9.8930 -2.3726 -0.3008 14 6 10.3289 -3.1395 0.9493 15 6 11.8568 -3.1991 1.0042 16 7 12.2742 -3.9328 2.2015 17 6 13.6059 -4.1143 2.4639 18 1 14.3485 -3.7168 1.7879 19 6 14.0013 -4.8101 3.5981 20 7 15.2813 -4.9849 3.8499 21 14 12.7169 -5.4982 4.7669 22 1 12.3562 -6.8770 4.3498 23 1 13.2670 -5.5261 6.1460 24 1 11.5065 -4.6385 4.7340 25 7 5.6291 -2.1364 -0.5360 26 6 4.3174 -2.1272 -0.6058 27 1 -0.3633 -0.5139 0.8900 28 1 -0.3634 1.0276 0.0005 29 1 -0.3633 -0.5139 -0.8900 30 1 1.6975 -2.0064 -0.0538 31 1 3.6860 0.5447 1.3840 32 1 6.1661 0.4794 1.4721 33 1 7.4533 -3.0545 -2.0566 34 1 8.2791 -4.2824 -1.0676 35 1 6.7514 -3.5647 -0.5025 36 1 10.2693 -2.8809 -1.1886 37 1 10.2947 -1.3599 -0.2644 38 1 9.9526 -2.6311 1.8370 39 1 9.9272 -4.1521 0.9128 40 1 12.2327 -3.7077 0.1164 41 1 12.2588 -2.1865 1.0405 42 1 11.6072 -4.2895 2.8088 43 1 15.5576 -5.4708 4.6427 44 1 3.8095 -2.8726 -1.1997 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754377432.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:47 Heat of formation + Delta-G solvation = -28.303501 kcal Electronic energy + Delta-G solvation = -25726.365035 eV Core-core repulsion = 21871.940250 eV Total energy + Delta-G solvation = -3854.424785 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.18977 -41.08802 -39.81738 -37.68403 -36.61621 -36.26546 -34.19317 -33.42871 -32.46238 -31.73819 -29.94442 -27.99570 -27.17170 -25.40529 -24.81596 -23.87002 -22.70305 -21.87640 -20.99174 -19.67214 -19.12278 -18.57208 -18.19202 -17.67108 -16.92548 -16.72857 -16.62461 -16.30435 -16.09412 -15.68249 -15.62768 -15.22620 -14.97935 -14.77338 -14.72963 -14.47513 -14.06624 -13.85318 -13.70664 -13.56690 -13.37040 -13.12076 -12.98808 -12.81857 -12.77777 -12.50501 -12.07632 -11.93814 -11.85446 -11.80962 -11.41973 -11.29438 -10.99746 -10.90006 -10.30757 -9.71799 -9.45058 -9.33318 -8.05231 -5.39369 -0.57890 0.10530 1.33197 1.35347 1.39328 1.46757 1.70481 1.86382 1.96730 2.46249 2.71804 3.02468 3.25566 3.53340 3.59818 3.65445 3.72880 3.85421 3.99592 4.04582 4.20073 4.36375 4.50266 4.52897 4.55474 4.56740 4.67702 4.68475 4.73712 4.81801 4.89088 4.94928 4.98783 5.15775 5.20425 5.25529 5.29267 5.50665 5.63867 5.72598 6.18782 6.25791 6.29536 6.57082 7.01390 7.02917 7.04568 7.80457 8.00031 9.16168 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024682 B = 0.002101 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.156601 B =13322.326470 C =13668.537660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.506 3.494 3 O -0.575 6.575 4 N -0.652 5.652 5 C 0.126 3.874 6 C -0.097 4.097 7 C -0.097 4.097 8 C 0.042 3.958 9 C 0.557 3.443 10 O -0.577 6.577 11 N -0.593 5.593 12 C 0.077 3.923 13 C 0.122 3.878 14 C -0.125 4.125 15 C 0.157 3.843 16 N -0.761 5.761 17 C -0.240 4.240 18 H 0.058 0.942 19 C -0.065 4.065 20 N -0.982 5.982 21 Si 0.959 3.041 22 H -0.271 1.271 23 H -0.293 1.293 24 H -0.259 1.259 25 N -0.429 5.429 26 C 0.083 3.917 27 H 0.119 0.881 28 H 0.089 0.911 29 H 0.122 0.878 30 H 0.439 0.561 31 H 0.144 0.856 32 H 0.138 0.862 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.069 0.931 38 H 0.044 0.956 39 H 0.077 0.923 40 H 0.040 0.960 41 H 0.018 0.982 42 H 0.365 0.635 43 H 0.259 0.741 44 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -40.678 3.633 -13.497 43.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.297 3.703 3 O -0.454 6.454 4 N -0.301 5.301 5 C 0.027 3.973 6 C -0.125 4.125 7 C -0.119 4.119 8 C -0.094 4.094 9 C 0.345 3.655 10 O -0.457 6.457 11 N -0.323 5.323 12 C -0.064 4.064 13 C -0.001 4.001 14 C -0.164 4.164 15 C 0.030 3.970 16 N -0.407 5.407 17 C -0.371 4.371 18 H 0.076 0.924 19 C -0.256 4.256 20 N -0.632 5.632 21 Si 0.785 3.215 22 H -0.197 1.197 23 H -0.219 1.219 24 H -0.184 1.184 25 N -0.141 5.141 26 C -0.080 4.080 27 H 0.137 0.863 28 H 0.108 0.892 29 H 0.140 0.860 30 H 0.281 0.719 31 H 0.162 0.838 32 H 0.156 0.844 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.126 0.874 36 H 0.129 0.871 37 H 0.088 0.912 38 H 0.062 0.938 39 H 0.095 0.905 40 H 0.058 0.942 41 H 0.036 0.964 42 H 0.198 0.802 43 H 0.068 0.932 44 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -39.282 4.230 -13.727 41.826 hybrid contribution -0.355 0.196 1.534 1.587 sum -39.638 4.427 -12.193 41.706 Atomic orbital electron populations 1.21978 0.86287 1.06654 1.07295 1.22045 0.92859 0.82217 0.73202 1.90786 1.71942 1.33193 1.49441 1.43470 1.03051 1.11422 1.72123 1.19114 0.85737 0.97259 0.95160 1.21580 0.93387 0.99778 0.97722 1.21977 0.94619 0.97479 0.97824 1.20777 0.93177 0.95447 1.00025 1.18302 0.86817 0.81849 0.78527 1.90786 1.68832 1.40094 1.45998 1.47866 1.07101 1.24009 1.53318 1.22516 0.97624 0.88531 0.97773 1.21439 0.78798 1.01435 0.98445 1.21915 0.94890 1.01137 0.98475 1.20686 0.93068 0.94394 0.88814 1.42737 1.03227 1.67534 1.27160 1.19082 0.83769 1.28272 1.05985 0.92433 1.25549 0.98028 1.01692 1.00341 1.69888 1.15769 1.48090 1.29484 0.85355 0.79057 0.78961 0.78083 1.19685 1.21946 1.18418 1.68054 1.09437 1.20732 1.15829 1.23495 0.88608 0.99073 0.96815 0.86278 0.89208 0.86014 0.71938 0.83801 0.84412 0.91390 0.90666 0.87436 0.87147 0.91236 0.93754 0.90474 0.94192 0.96400 0.80221 0.93216 0.77160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 0.16 10.32 71.24 0.74 0.89 16 2 C 0.51 4.43 7.70 87.66 0.68 5.10 16 3 O -0.58 -11.70 14.87 -3.03 -0.04 -11.75 16 4 N -0.65 -3.01 5.33 -303.12 -1.62 -4.62 16 5 C 0.13 1.52 6.27 38.47 0.24 1.76 16 6 C -0.10 -1.81 8.75 22.56 0.20 -1.61 16 7 C -0.10 -2.26 9.62 22.58 0.22 -2.04 16 8 C 0.04 1.02 6.62 41.86 0.28 1.29 16 9 C 0.56 16.79 7.65 86.81 0.66 17.45 16 10 O -0.58 -21.97 15.91 -3.86 -0.06 -22.03 16 11 N -0.59 -15.19 2.87 -850.11 -2.44 -17.63 16 12 C 0.08 1.35 9.25 127.77 1.18 2.53 16 13 C 0.12 3.33 5.38 86.38 0.46 3.79 16 14 C -0.13 -4.09 5.65 30.60 0.17 -3.91 16 15 C 0.16 6.38 6.26 86.38 0.54 6.92 16 16 N -0.76 -38.23 5.41 -343.44 -1.86 -40.08 16 17 C -0.24 -14.49 10.47 84.03 0.88 -13.61 16 18 H 0.06 3.77 8.06 -2.91 -0.02 3.74 16 19 C -0.06 -3.97 5.50 84.86 0.47 -3.50 16 20 N -0.98 -64.81 13.97 21.65 0.30 -64.51 16 21 Si 0.96 47.34 27.74 68.60 1.90 49.24 16 22 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 23 H -0.29 -14.50 7.11 99.48 0.71 -13.79 16 24 H -0.26 -11.90 6.52 99.48 0.65 -11.25 16 25 N -0.43 -7.40 6.02 -184.42 -1.11 -8.51 16 26 C 0.08 0.86 11.12 85.04 0.95 1.80 16 27 H 0.12 -0.64 8.14 -2.38 -0.02 -0.66 16 28 H 0.09 0.15 8.12 -2.39 -0.02 0.13 16 29 H 0.12 -0.74 8.14 -2.39 -0.02 -0.76 16 30 H 0.44 -2.01 8.82 -92.70 -0.82 -2.82 16 31 H 0.14 2.81 6.60 -2.91 -0.02 2.79 16 32 H 0.14 3.46 7.65 -2.91 -0.02 3.44 16 33 H 0.07 1.04 8.13 -2.39 -0.02 1.02 16 34 H 0.07 1.13 8.03 -2.39 -0.02 1.11 16 35 H 0.11 1.79 5.34 -2.42 -0.01 1.78 16 36 H 0.11 2.38 8.07 -2.39 -0.02 2.36 16 37 H 0.07 2.16 7.41 -2.39 -0.02 2.14 16 38 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 40 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 42 H 0.36 17.53 5.53 -92.71 -0.51 17.02 16 43 H 0.26 16.18 8.31 -92.71 -0.77 15.41 16 44 H 0.21 0.14 8.06 -2.91 -0.02 0.11 16 Total: -1.00 -89.49 370.39 2.38 -87.11 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -0.35 Total: 15.91 kcal Atomic # 6 Polarization: 9.22 SS G_CDS: 7.66 Total: 16.88 kcal Atomic # 7 Polarization: -128.63 SS G_CDS: -6.72 Total: -135.36 kcal Atomic # 8 Polarization: -33.67 SS G_CDS: -0.11 Total: -33.78 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 1.90 Total: 49.24 kcal Total: -89.49 2.38 -87.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754377432.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.804 kcal (2) G-P(sol) polarization free energy of solvation -89.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds