Wall clock time and date at job start Tue Mar 31 2020 12:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35515 * 116.99743 * 2 1 4 4 C 1.39649 * 120.49032 * 180.27721 * 3 2 1 5 5 C 1.39146 * 118.20249 * 180.26169 * 4 3 2 6 6 C 1.48446 * 120.51411 * 179.73942 * 5 4 3 7 7 O 1.21482 * 120.00085 * 359.72469 * 6 5 4 8 8 N 1.34775 * 119.99969 * 179.72831 * 6 5 4 9 9 C 1.47188 * 125.73575 * 359.86083 * 8 6 5 10 10 C 1.54320 * 107.29632 * 181.02725 * 9 8 6 11 11 C 1.55159 * 102.94018 * 22.28801 * 10 9 8 12 12 H 1.09003 * 111.00588 * 82.57251 * 11 10 9 13 13 C 1.53003 * 111.00239 * 206.42272 * 11 10 9 14 14 H 1.08999 * 109.47125 * 55.27819 * 13 11 10 15 15 C 1.52999 * 109.46933 * 175.27790 * 13 11 10 16 16 N 1.46497 * 109.47207 * 295.28092 * 13 11 10 17 17 C 1.36934 * 120.00320 * 154.99940 * 16 13 11 18 18 H 1.08005 * 119.99820 * 0.02562 * 17 16 13 19 19 C 1.38810 * 120.00426 * 179.97438 * 17 16 13 20 20 N 1.31620 * 119.99573 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00293 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.46796 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.46986 * 120.00562 * 21 19 17 24 24 H 1.48499 * 109.46871 * 240.00374 * 21 19 17 25 25 C 1.47428 * 125.65094 * 180.02562 * 8 6 5 26 26 N 1.33281 * 118.96461 * 359.47236 * 5 4 3 27 27 C 1.31520 * 120.88846 * 0.27054 * 26 5 4 28 28 N 1.31900 * 121.98908 * 0.02562 * 27 26 5 29 29 H 1.08998 * 109.46998 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47222 * 299.99121 * 1 2 3 31 31 H 1.09000 * 109.47640 * 59.99964 * 1 2 3 32 32 H 1.07994 * 120.89546 * 0.02562 * 4 3 2 33 33 H 1.09009 * 109.79332 * 61.64729 * 9 8 6 34 34 H 1.08998 * 110.07333 * 300.57304 * 9 8 6 35 35 H 1.09000 * 110.72079 * 263.92206 * 10 9 8 36 36 H 1.08994 * 110.71991 * 140.64797 * 10 9 8 37 37 H 1.09001 * 109.47301 * 54.77721 * 15 13 11 38 38 H 1.09003 * 109.46903 * 174.77588 * 15 13 11 39 39 H 1.08999 * 109.47207 * 294.77519 * 15 13 11 40 40 H 0.97005 * 119.99940 * 334.99827 * 16 13 11 41 41 H 0.97007 * 119.99491 * 179.97438 * 20 19 17 42 42 H 1.08996 * 110.36466 * 37.00014 * 25 8 6 43 43 H 1.09000 * 110.36681 * 274.78084 * 25 8 6 44 44 H 1.07997 * 119.00671 * 180.02562 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2075 0.0000 4 6 3.4380 1.2926 -0.0058 5 6 4.0197 2.5566 0.0000 6 6 5.4966 2.7067 0.0001 7 8 6.2073 1.7214 0.0000 8 7 6.0490 3.9360 0.0003 9 6 5.3115 5.2098 -0.0025 10 6 6.3566 6.3450 -0.0275 11 6 7.6136 5.6472 -0.6109 12 1 7.5694 5.6086 -1.6994 13 6 8.8938 6.3407 -0.1406 14 1 8.9070 6.3792 0.9486 15 6 10.1104 5.5574 -0.6380 16 7 8.9370 7.7028 -0.6780 17 6 9.6594 8.6708 -0.0329 18 1 10.1978 8.4300 0.8719 19 6 9.7007 9.9614 -0.5424 20 7 9.0451 10.2548 -1.6453 21 14 10.6869 11.2818 0.3373 22 1 11.3273 10.6997 1.5440 23 1 11.7349 11.8067 -0.5744 24 1 9.7826 12.3883 0.7411 25 6 7.4939 4.2288 -0.0002 26 7 3.2302 3.6304 0.0002 27 6 1.9209 3.5058 0.0002 28 7 1.3313 2.3259 0.0006 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 4.0480 0.4014 -0.0108 33 1 4.7030 5.2860 0.8988 34 1 4.6754 5.2720 -0.8854 35 1 6.5519 6.7118 0.9802 36 1 6.0293 7.1563 -0.6777 37 1 10.0488 5.4389 -1.7198 38 1 11.0208 6.0999 -0.3831 39 1 10.1282 4.5753 -0.1654 40 1 8.4538 7.9191 -1.4908 41 1 9.0737 11.1568 -2.0011 42 1 8.0274 3.5045 -0.6156 43 1 7.8830 4.2204 1.0180 44 1 1.3101 4.3965 -0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754791922.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:17 Heat of formation + Delta-G solvation = 1.122613 kcal Electronic energy + Delta-G solvation = -26488.144649 eV Core-core repulsion = 22634.995876 eV Total energy + Delta-G solvation = -3853.148773 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.73359 -40.00944 -38.81380 -37.81385 -35.25191 -33.79161 -32.37388 -32.19976 -30.51856 -29.24904 -28.16668 -27.49153 -25.60029 -24.65981 -24.11784 -22.83284 -21.39354 -20.48361 -19.62328 -18.73878 -18.35694 -17.13563 -16.73917 -16.42841 -16.29447 -15.85616 -15.68941 -15.24772 -15.01163 -14.53743 -14.43844 -14.04100 -13.73194 -13.40439 -13.14937 -12.70835 -12.58668 -12.51160 -12.45187 -12.11732 -12.08399 -11.70553 -11.28313 -11.13865 -10.89816 -10.77460 -10.67623 -10.62023 -10.54941 -10.28992 -10.17519 -9.84350 -9.67804 -9.63976 -9.60279 -8.91883 -8.62771 -6.96125 -5.77081 -3.05263 0.14918 0.61151 2.26580 2.54829 2.84344 3.42778 3.48029 3.49022 3.50776 3.58240 3.60809 4.24333 4.53382 4.57163 4.70534 4.80651 4.81371 4.90798 4.96801 5.11606 5.17879 5.18485 5.49042 5.53621 5.58833 5.67080 5.79356 5.89044 5.99082 6.03517 6.11239 6.19428 6.26871 6.32146 6.42961 6.47870 6.60455 6.62839 6.66185 6.88024 7.10970 7.38308 7.53468 7.70827 7.92507 8.41522 9.53090 10.10395 10.45352 11.45587 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.029239 B = 0.002378 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.393826 B =11771.641391 C =12492.630241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.298 6.298 3 C 0.363 3.637 4 C -0.185 4.185 5 C 0.166 3.834 6 C 0.579 3.421 7 O -0.530 6.530 8 N -0.589 5.589 9 C 0.113 3.887 10 C -0.121 4.121 11 C -0.102 4.102 12 H 0.081 0.919 13 C 0.185 3.815 14 H 0.050 0.950 15 C -0.169 4.169 16 N -0.722 5.722 17 C -0.234 4.234 18 H 0.070 0.930 19 C -0.014 4.014 20 N -0.932 5.932 21 Si 0.904 3.096 22 H -0.281 1.281 23 H -0.293 1.293 24 H -0.292 1.292 25 C 0.112 3.888 26 N -0.510 5.510 27 C 0.334 3.666 28 N -0.566 5.566 29 H 0.102 0.898 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.165 0.835 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.045 0.955 38 H 0.055 0.945 39 H 0.037 0.963 40 H 0.384 0.616 41 H 0.254 0.746 42 H 0.080 0.920 43 H 0.074 0.926 44 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.538 -17.961 3.258 25.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.202 6.202 3 C 0.175 3.825 4 C -0.209 4.209 5 C 0.021 3.979 6 C 0.364 3.636 7 O -0.407 6.407 8 N -0.321 5.321 9 C -0.009 4.009 10 C -0.159 4.159 11 C -0.122 4.122 12 H 0.100 0.900 13 C 0.075 3.925 14 H 0.068 0.932 15 C -0.229 4.229 16 N -0.363 5.363 17 C -0.365 4.365 18 H 0.088 0.912 19 C -0.210 4.210 20 N -0.581 5.581 21 Si 0.736 3.264 22 H -0.206 1.206 23 H -0.220 1.220 24 H -0.219 1.219 25 C -0.010 4.010 26 N -0.231 5.231 27 C 0.046 3.954 28 N -0.297 5.297 29 H 0.120 0.880 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.183 0.817 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.106 0.894 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.056 0.944 40 H 0.217 0.783 41 H 0.064 0.936 42 H 0.098 0.902 43 H 0.092 0.908 44 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -17.506 -17.970 3.388 25.315 hybrid contribution 0.469 0.298 0.095 0.564 sum -17.036 -17.672 3.483 24.792 Atomic orbital electron populations 1.23011 0.76203 1.03659 1.02952 1.86266 1.23710 1.23608 1.86571 1.20024 0.89193 0.85208 0.88110 1.21890 0.92703 1.00562 1.05787 1.21381 0.94941 0.88589 0.92972 1.17273 0.85204 0.82680 0.78407 1.90809 1.61447 1.37358 1.51047 1.48429 1.08861 1.05478 1.69302 1.22305 0.94451 0.81399 1.02771 1.22683 0.93724 0.96619 1.02853 1.22677 0.96608 0.92460 1.00476 0.90026 1.20129 0.89896 0.85835 0.96631 0.93246 1.22504 1.01086 0.98599 1.00684 1.42367 1.59698 1.03808 1.30397 1.19260 1.22411 0.89205 1.05672 0.91173 1.24721 1.00945 0.97512 0.97843 1.69670 1.46499 1.19669 1.22274 0.86153 0.79407 0.82178 0.78674 1.20605 1.21992 1.21941 1.22429 0.79535 0.97383 1.01642 1.68682 1.06334 1.32528 1.15589 1.24808 0.88205 0.93825 0.88545 1.68057 1.42054 0.99368 1.20233 0.87993 0.91773 0.91768 0.81708 0.90792 0.90588 0.90368 0.89420 0.93568 0.92550 0.94375 0.78282 0.93631 0.90209 0.90778 0.77610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.21 10.41 101.05 1.05 1.26 16 2 O -0.30 -2.71 10.49 -18.24 -0.19 -2.90 16 3 C 0.36 3.72 7.54 -16.68 -0.13 3.59 16 4 C -0.19 -2.06 9.68 -38.72 -0.37 -2.44 16 5 C 0.17 2.03 6.75 -82.70 -0.56 1.47 16 6 C 0.58 8.35 7.86 -12.05 -0.09 8.25 16 7 O -0.53 -8.87 16.67 5.38 0.09 -8.78 16 8 N -0.59 -8.16 3.33 -171.28 -0.57 -8.74 16 9 C 0.11 1.42 5.42 -2.98 -0.02 1.40 16 10 C -0.12 -1.74 6.21 -24.90 -0.15 -1.90 16 11 C -0.10 -1.57 2.64 -88.48 -0.23 -1.80 16 12 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 13 C 0.19 3.43 2.40 -67.93 -0.16 3.27 16 14 H 0.05 0.94 8.07 -51.93 -0.42 0.52 16 15 C -0.17 -2.94 9.22 37.16 0.34 -2.60 16 16 N -0.72 -16.98 4.90 -53.43 -0.26 -17.24 16 17 C -0.23 -6.24 9.93 -15.06 -0.15 -6.39 16 18 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 19 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 20 N -0.93 -27.39 13.06 55.49 0.72 -26.66 16 21 Si 0.90 21.99 29.55 -169.99 -5.02 16.96 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 25 C 0.11 1.58 5.47 -2.54 -0.01 1.57 16 26 N -0.51 -5.54 7.07 -11.20 -0.08 -5.61 16 27 C 0.33 2.93 12.27 -92.30 -1.13 1.80 16 28 N -0.57 -5.41 9.36 -14.64 -0.14 -5.55 16 29 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.35 8.12 -51.93 -0.42 -0.07 16 31 H 0.06 0.36 8.12 -51.93 -0.42 -0.07 16 32 H 0.17 1.76 7.73 -52.49 -0.41 1.35 16 33 H 0.07 0.88 7.56 -51.92 -0.39 0.49 16 34 H 0.08 0.93 7.45 -51.93 -0.39 0.54 16 35 H 0.08 1.18 8.03 -51.93 -0.42 0.77 16 36 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 37 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 39 H 0.04 0.56 7.58 -51.93 -0.39 0.17 16 40 H 0.38 9.64 7.80 -40.82 -0.32 9.33 16 41 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 42 H 0.08 1.15 8.04 -51.93 -0.42 0.73 16 43 H 0.07 1.02 8.03 -51.93 -0.42 0.61 16 44 H 0.21 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 368.49 15.07 5.55 5.55 Total: -1.00 -31.59 368.49 -8.11 -39.70 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -6.49 Total: 6.27 kcal Atomic # 6 Polarization: 8.71 SS G_CDS: -1.72 Total: 7.00 kcal Atomic # 7 Polarization: -63.48 SS G_CDS: -0.32 Total: -63.80 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: -0.10 Total: -11.68 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.59 -8.11 -39.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754791922.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.822 kcal (2) G-P(sol) polarization free energy of solvation -31.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds