Wall clock time and date at job start Tue Mar 31 2020 12:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42896 * 113.99926 * 2 1 4 4 C 1.50703 * 109.47111 * 180.02562 * 3 2 1 5 5 C 1.34786 * 125.64237 * 89.99877 * 4 3 2 6 6 C 1.40827 * 107.07222 * 180.28649 * 5 4 3 7 7 C 1.36255 * 106.72824 * 359.57182 * 6 5 4 8 8 C 1.47128 * 125.96324 * 180.11831 * 7 6 5 9 9 N 1.31506 * 126.50568 * 15.36403 * 8 7 6 10 10 N 1.28504 * 109.92505 * 179.97438 * 9 8 7 11 11 C 1.31335 * 110.14961 * 0.02562 * 10 9 8 12 12 N 1.38450 * 126.35063 * 179.97438 * 11 10 9 13 13 C 1.46900 * 111.00262 * 236.07242 * 12 11 10 14 14 C 1.46896 * 111.00015 * 0.03111 * 12 11 10 15 15 H 1.09001 * 109.46922 * 299.99814 * 14 12 11 16 16 C 1.52999 * 109.47366 * 59.99470 * 14 12 11 17 17 C 1.50696 * 109.47310 * 179.97438 * 14 12 11 18 18 H 1.08007 * 120.00194 * 359.97438 * 17 14 12 19 19 C 1.37882 * 120.00107 * 179.97438 * 17 14 12 20 20 N 1.31515 * 120.00074 * 359.97438 * 19 17 14 21 21 Si 1.86805 * 119.99939 * 179.97438 * 19 17 14 22 22 H 1.48498 * 109.46822 * 90.00261 * 21 19 17 23 23 H 1.48493 * 109.47111 * 209.99918 * 21 19 17 24 24 H 1.48500 * 109.47260 * 330.00040 * 21 19 17 25 25 N 1.36596 * 107.29850 * 359.73419 * 11 10 9 26 26 C 1.46499 * 127.17878 * 180.30149 * 25 11 10 27 27 O 1.34329 * 125.63555 * 270.02308 * 4 3 2 28 28 H 1.09007 * 109.47172 * 299.99710 * 1 2 3 29 29 H 1.08997 * 109.47670 * 59.99956 * 1 2 3 30 30 H 1.09003 * 109.47000 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47624 * 59.99845 * 3 2 1 32 32 H 1.08998 * 109.46906 * 299.99830 * 3 2 1 33 33 H 1.08002 * 126.45960 * 0.02562 * 5 4 3 34 34 H 1.08001 * 126.63337 * 179.73470 * 6 5 4 35 35 H 1.08996 * 109.47072 * 60.00171 * 13 12 11 36 36 H 1.08999 * 109.46788 * 180.02562 * 13 12 11 37 37 H 1.08993 * 109.47137 * 299.99865 * 13 12 11 38 38 H 1.08997 * 109.47112 * 300.00321 * 16 14 12 39 39 H 1.09001 * 109.46819 * 60.00281 * 16 14 12 40 40 H 1.09004 * 109.47285 * 180.02562 * 16 14 12 41 41 H 0.96997 * 120.00213 * 179.97438 * 20 19 17 42 42 H 1.09006 * 109.46743 * 270.15152 * 26 25 11 43 43 H 1.09001 * 109.47367 * 30.15167 * 26 25 11 44 44 H 1.09001 * 109.47099 * 150.16104 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.2950 1.1246 -1.0963 6 6 5.6254 1.0124 -0.6484 7 6 5.5829 1.0216 0.7134 8 6 6.7420 0.9284 1.6148 9 7 8.0036 1.1026 1.2873 10 7 8.7500 0.9475 2.3218 11 6 8.0142 0.6647 3.3723 12 7 8.4736 0.4322 4.6575 13 6 8.0216 -0.8760 5.1496 14 6 9.9371 0.5418 4.7213 15 1 10.3859 -0.1919 4.0517 16 6 10.3623 1.9484 4.2952 17 6 10.3991 0.2837 6.1323 18 1 9.6777 0.0610 6.9046 19 6 11.7429 0.3319 6.4373 20 7 12.6215 0.6026 5.4969 21 14 12.3156 0.0126 8.1866 22 1 12.5814 -1.4377 8.3634 23 1 13.5602 0.7793 8.4476 24 1 11.2605 0.4423 9.1391 25 7 6.7112 0.6478 2.9628 26 6 5.5280 0.3840 3.7855 27 8 4.2931 1.1240 1.0908 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.6886 1.8464 0.8899 32 1 1.6885 1.8463 -0.8900 33 1 3.9638 1.1514 -2.1239 34 1 6.5088 0.9367 -1.2651 35 1 8.4010 -1.6611 4.4956 36 1 8.3961 -1.0328 6.1612 37 1 6.9321 -0.9046 5.1575 38 1 10.0281 2.1355 3.2747 39 1 9.9135 2.6821 4.9648 40 1 11.4483 2.0295 4.3421 41 1 13.5668 0.6368 5.7116 42 1 5.3148 -0.6850 3.7831 43 1 5.7147 0.7150 4.8071 44 1 4.6742 0.9256 3.3782 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772164438.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:41 Heat of formation + Delta-G solvation = 83.154709 kcal Electronic energy + Delta-G solvation = -26951.863345 eV Core-core repulsion = 23102.271750 eV Total energy + Delta-G solvation = -3849.591594 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.89125 -42.30100 -38.26312 -37.24630 -34.80575 -33.32064 -32.93478 -31.87655 -29.53487 -29.28613 -27.77854 -27.09936 -25.87422 -25.09114 -24.31482 -22.74543 -21.69827 -21.45520 -20.32942 -19.50331 -17.67606 -17.16762 -16.74900 -16.40508 -16.22814 -16.11899 -15.65812 -15.47182 -15.25235 -14.57716 -14.13985 -13.98825 -13.53911 -13.19126 -13.14743 -13.11104 -13.02245 -12.77934 -12.40015 -12.24158 -11.90474 -11.88726 -11.33575 -11.04274 -10.92664 -10.63835 -10.58674 -10.27858 -10.23606 -10.18063 -10.07423 -9.99412 -9.80621 -9.66980 -8.91946 -8.56235 -8.32204 -7.33408 -6.06934 -4.15378 0.95075 2.02459 2.26960 2.48380 2.73283 3.26626 3.33784 3.35720 3.36408 3.55293 4.23853 4.29109 4.49297 4.53072 4.68212 4.75305 4.83800 4.87649 4.91430 4.97015 5.14022 5.23046 5.24576 5.36004 5.45022 5.47327 5.60982 5.70072 5.85016 5.93598 5.99135 6.19390 6.31257 6.38957 6.58104 6.68317 6.89042 6.97291 7.11362 7.31563 7.40197 7.61307 7.70290 7.93205 8.25285 8.37735 8.84851 9.15072 9.49222 10.99128 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.030268 B = 0.002642 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.851748 B =10594.788502 C =11302.067864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.386 6.386 3 C 0.145 3.855 4 C -0.019 4.019 5 C -0.174 4.174 6 C -0.159 4.159 7 C 0.085 3.915 8 C 0.203 3.797 9 N -0.242 5.242 10 N -0.305 5.305 11 C 0.403 3.597 12 N -0.452 5.452 13 C 0.031 3.969 14 C 0.229 3.771 15 H 0.024 0.976 16 C -0.145 4.145 17 C -0.520 4.520 18 H 0.065 0.935 19 C 0.065 3.935 20 N -0.881 5.881 21 Si 0.901 3.099 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.274 1.274 25 N -0.487 5.487 26 C 0.079 3.921 27 O -0.169 6.169 28 H 0.044 0.956 29 H 0.045 0.955 30 H 0.090 0.910 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.156 0.844 34 H 0.163 0.837 35 H 0.032 0.968 36 H 0.101 0.899 37 H 0.051 0.949 38 H 0.045 0.955 39 H 0.024 0.976 40 H 0.088 0.912 41 H 0.263 0.737 42 H 0.076 0.924 43 H 0.097 0.903 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.603 -0.242 -9.693 25.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.305 6.305 3 C 0.069 3.931 4 C -0.070 4.070 5 C -0.193 4.193 6 C -0.181 4.181 7 C 0.033 3.967 8 C -0.060 4.060 9 N -0.086 5.086 10 N -0.152 5.152 11 C 0.049 3.951 12 N -0.176 5.176 13 C -0.116 4.116 14 C 0.125 3.875 15 H 0.041 0.959 16 C -0.203 4.203 17 C -0.558 4.558 18 H 0.083 0.917 19 C -0.138 4.138 20 N -0.519 5.519 21 Si 0.728 3.272 22 H -0.207 1.207 23 H -0.211 1.211 24 H -0.198 1.198 25 N -0.185 5.185 26 C -0.064 4.064 27 O -0.065 6.065 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.108 0.892 31 H 0.086 0.914 32 H 0.103 0.897 33 H 0.174 0.826 34 H 0.180 0.820 35 H 0.051 0.949 36 H 0.120 0.880 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.043 0.957 40 H 0.107 0.893 41 H 0.073 0.927 42 H 0.095 0.905 43 H 0.115 0.885 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -22.353 0.238 -9.833 24.422 hybrid contribution -0.695 -0.636 1.320 1.622 sum -23.048 -0.398 -8.512 24.573 Atomic orbital electron populations 1.22800 0.80172 1.03302 1.00272 1.88004 1.20160 1.26854 1.95496 1.20653 0.84269 0.85740 1.02415 1.21891 0.92331 1.08612 0.84133 1.21556 0.92381 1.05884 0.99465 1.21786 0.98497 1.05456 0.92368 1.18367 0.79490 1.07593 0.91250 1.20757 0.92819 1.11470 0.80922 1.74427 0.96881 1.15546 1.21717 1.74940 1.22660 1.23774 0.93853 1.23297 0.80133 0.98819 0.92891 1.59046 1.19278 1.29403 1.09825 1.22472 0.98673 0.87300 1.03137 1.19434 0.74636 0.95956 0.97450 0.95862 1.21995 1.04018 0.96022 0.98271 1.21039 0.92159 1.49277 0.93364 0.91688 1.24904 0.96524 0.94930 0.97484 1.69922 1.01924 1.47722 1.32324 0.86459 0.78291 0.78163 0.84256 1.20653 1.21095 1.19846 1.46176 1.07773 1.55883 1.08631 1.22113 0.85502 1.02569 0.96171 1.83973 1.15968 1.71601 1.34984 0.93710 0.93670 0.89186 0.91350 0.89667 0.82633 0.81954 0.94919 0.88033 0.92991 0.93623 0.95688 0.89316 0.92651 0.90541 0.88472 0.89347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.39 -3.53 10.69 -35.23 -0.38 -3.91 16 3 C 0.15 1.13 6.46 36.01 0.23 1.36 16 4 C -0.02 -0.21 6.94 -35.53 -0.25 -0.46 16 5 C -0.17 -1.86 10.78 -39.83 -0.43 -2.29 16 6 C -0.16 -2.10 10.85 -39.32 -0.43 -2.53 16 7 C 0.09 1.31 7.07 -36.69 -0.26 1.05 16 8 C 0.20 3.72 7.89 -153.74 -1.21 2.51 16 9 N -0.24 -5.13 12.22 32.49 0.40 -4.73 16 10 N -0.31 -7.13 8.97 30.34 0.27 -6.86 16 11 C 0.40 8.61 6.75 -318.72 -2.15 6.46 16 12 N -0.45 -9.90 4.68 -176.06 -0.82 -10.72 16 13 C 0.03 0.57 9.09 60.06 0.55 1.12 16 14 C 0.23 5.89 1.73 -68.87 -0.12 5.77 16 15 H 0.02 0.68 8.11 -51.93 -0.42 0.26 16 16 C -0.14 -3.79 8.77 37.16 0.33 -3.47 16 17 C -0.52 -13.81 7.88 -34.44 -0.27 -14.08 16 18 H 0.07 1.66 6.41 -52.48 -0.34 1.32 16 19 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 20 N -0.88 -25.05 11.32 55.43 0.63 -24.42 16 21 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 25 N -0.49 -8.70 3.24 -122.17 -0.40 -9.10 16 26 C 0.08 1.03 9.27 59.85 0.55 1.58 16 27 O -0.17 -2.30 9.03 4.34 0.04 -2.26 16 28 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 29 H 0.04 0.17 8.14 -51.93 -0.42 -0.26 16 30 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.16 1.20 8.06 -52.49 -0.42 0.78 16 34 H 0.16 2.00 8.06 -52.49 -0.42 1.58 16 35 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.10 1.89 6.10 -51.93 -0.32 1.57 16 37 H 0.05 0.76 5.43 -51.93 -0.28 0.48 16 38 H 0.05 1.17 5.42 -51.93 -0.28 0.89 16 39 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.09 2.50 6.07 -51.93 -0.32 2.18 16 41 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 42 H 0.08 0.86 7.84 -51.93 -0.41 0.45 16 43 H 0.10 1.20 7.60 -51.93 -0.39 0.80 16 44 H 0.09 1.02 6.59 -51.93 -0.34 0.68 16 LS Contribution 361.77 15.07 5.45 5.45 Total: -1.00 -32.85 361.77 -8.31 -41.16 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -6.04 Total: -0.29 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: -2.44 Total: -0.06 kcal Atomic # 7 Polarization: -55.90 SS G_CDS: 0.08 Total: -55.83 kcal Atomic # 8 Polarization: -5.83 SS G_CDS: -0.34 Total: -6.17 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.85 -8.31 -41.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772164438.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.313 kcal (2) G-P(sol) polarization free energy of solvation -32.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds